Human Gene PGF (ENST00000555567.6_13) from GENCODE V47lift37
  Description: placental growth factor, transcript variant 1 (from RefSeq NM_002632.6)
Gencode Transcript: ENST00000555567.6_13
Gencode Gene: ENSG00000119630.14_16
Transcript (Including UTRs)
   Position: hg19 chr14:75,408,537-75,422,300 Size: 13,764 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr14:75,409,409-75,421,945 Size: 12,537 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:75,408,537-75,422,300)mRNA (may differ from genome)Protein (170 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: Q53XY6_HUMAN
DESCRIPTION: SubName: Full=Placental growth factor, vascular endothelial growth factor-related protein; SubName: Full=Placental growth factor, vascular endothelial growth factor-related protein, isoform CRA_a;
SIMILARITY: Belongs to the PDGF/VEGF growth factor family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PGF
Diseases sorted by gene-association score: placental insufficiency (28), twin-to-twin transfusion syndrome (23), placenta disease (17), neovascular glaucoma (12), placenta accreta (12), severe pre-eclampsia (12), pyometritis (11), placental abruption (10), pre-eclampsia (10), endometrial disease (10), preeclampsia/eclampsia 1 (8), eclampsia (8), epithelioid hemangioendothelioma (7), mild pre-eclampsia (7), limb ischemia (7), sickle cell disease (7), ectopic pregnancy (7), acute pyelonephritis (7), pyelonephritis (6), vaginal discharge (6), uterine disease (6), hellp syndrome (6), cancer-associated retinopathy (5), persistent fetal circulation syndrome (5), shoulder impingement syndrome (5), endometritis (5), retinal vascular occlusion (4), eye disease (2), microvascular complications of diabetes 5 (2), macular degeneration, age-related, 1 (2), myocardial infarction (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 36.66 RPKM in Thyroid
Total median expression: 300.80 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -170.20355-0.479 Picture PostScript Text
3' UTR -358.40872-0.411 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000072 - PD_growth_factor
IPR023581 - PD_growth_factor_CS

Pfam Domains:
PF00341 - PDGF/VEGF domain

SCOP Domains:
57501 - Cystine-knot cytokines

ModBase Predicted Comparative 3D Structure on Q53XY6
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0008083 growth factor activity
GO:0042803 protein homodimerization activity
GO:0046982 protein heterodimerization activity

Biological Process:
GO:0001658 branching involved in ureteric bud morphogenesis
GO:0001666 response to hypoxia
GO:0001938 positive regulation of endothelial cell proliferation
GO:0002040 sprouting angiogenesis
GO:0007565 female pregnancy
GO:0010469 regulation of receptor activity
GO:0031100 animal organ regeneration
GO:0032870 cellular response to hormone stimulus
GO:0042493 response to drug
GO:0045766 positive regulation of angiogenesis
GO:0060688 regulation of morphogenesis of a branching structure

Cellular Component:
GO:0005615 extracellular space
GO:0016020 membrane


-  Descriptions from all associated GenBank mRNAs
  A18411 - PIGF gene seq ID No:1.
X54936 - H.sapiens mRNA for placenta growth factor (PlGF).
BC007255 - Homo sapiens placental growth factor, mRNA (cDNA clone MGC:15513 IMAGE:3028008), complete cds.
BC007789 - Homo sapiens placental growth factor, mRNA (cDNA clone MGC:14095 IMAGE:3629125), complete cds.
BC001422 - Homo sapiens placental growth factor, mRNA (cDNA clone MGC:1683 IMAGE:3139175), complete cds.
FW406922 - NUCLEIC ACID COMPOUNDS FOR INHIBITING VEGF FAMILY GENE EXPRESSION AND USES THEREOF.
JA810035 - Sequence 1168 from Patent EP2468864.
JD260229 - Sequence 241253 from Patent EP1572962.
JD467079 - Sequence 448103 from Patent EP1572962.
JD117702 - Sequence 98726 from Patent EP1572962.
JD207105 - Sequence 188129 from Patent EP1572962.
JD525485 - Sequence 506509 from Patent EP1572962.
JD530194 - Sequence 511218 from Patent EP1572962.
JD116608 - Sequence 97632 from Patent EP1572962.
JD216831 - Sequence 197855 from Patent EP1572962.
JD423409 - Sequence 404433 from Patent EP1572962.
JD473186 - Sequence 454210 from Patent EP1572962.
JD473185 - Sequence 454209 from Patent EP1572962.
JD368849 - Sequence 349873 from Patent EP1572962.
JD075671 - Sequence 56695 from Patent EP1572962.
JD368848 - Sequence 349872 from Patent EP1572962.
JD114929 - Sequence 95953 from Patent EP1572962.
JD330611 - Sequence 311635 from Patent EP1572962.
JD437334 - Sequence 418358 from Patent EP1572962.
JD399273 - Sequence 380297 from Patent EP1572962.
JD380400 - Sequence 361424 from Patent EP1572962.
JD399624 - Sequence 380648 from Patent EP1572962.
JD265278 - Sequence 246302 from Patent EP1572962.
S72960 - Homo sapiens placenta growth factor 2 (PlGF-2) mRNA, complete cds.
JD115935 - Sequence 96959 from Patent EP1572962.
JD320693 - Sequence 301717 from Patent EP1572962.
BT007182 - Homo sapiens placental growth factor, vascular endothelial growth factor-related protein mRNA, complete cds.
DQ892136 - Synthetic construct clone IMAGE:100004766; FLH183336.01X; RZPDo839B02142D placental growth factor, vascular endothelial growth factor-related protein (PGF) gene, encodes complete protein.
DQ895330 - Synthetic construct Homo sapiens clone IMAGE:100009790; FLH183332.01L; RZPDo839B02141D placental growth factor, vascular endothelial growth factor-related protein (PGF) gene, encodes complete protein.
AB590133 - Synthetic construct DNA, clone: pFN21AE1456, Homo sapiens PGF gene for placental growth factor, without stop codon, in Flexi system.
AK023843 - Homo sapiens cDNA FLJ13781 fis, clone PLACE4000465.
BX248289 - human full-length cDNA clone CS0DI075YC18 of Placenta of Homo sapiens (human).
AK309886 - Homo sapiens cDNA, FLJ99927.
AK310608 - Homo sapiens cDNA, FLJ17650.
AK310886 - Homo sapiens cDNA, FLJ17928.
LF212503 - JP 2014500723-A/20006: Polycomb-Associated Non-Coding RNAs.
JD401317 - Sequence 382341 from Patent EP1572962.
JD116792 - Sequence 97816 from Patent EP1572962.
MA448080 - JP 2018138019-A/20006: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000555567.1, ENST00000555567.2, ENST00000555567.3, ENST00000555567.4, ENST00000555567.5, hCG_22349 , NM_002632, PGF , Q53XY6, Q53XY6_HUMAN, uc325hlw.1, uc325hlw.2
UCSC ID: ENST00000555567.6_13
RefSeq Accession: NM_002632.6
Protein: Q53XY6

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.