Human Gene PHLPP2 (ENST00000568954.5_13) from GENCODE V47lift37
  Description: PH domain and leucine rich repeat protein phosphatase 2, transcript variant 1 (from RefSeq NM_015020.3)
Gencode Transcript: ENST00000568954.5_13
Gencode Gene: ENSG00000040199.18_16
Transcript (Including UTRs)
   Position: hg19 chr16:71,678,827-71,758,604 Size: 79,778 Total Exon Count: 19 Strand: -
Coding Region
   Position: hg19 chr16:71,682,793-71,748,698 Size: 65,906 Coding Exon Count: 18 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:71,678,827-71,758,604)mRNA (may differ from genome)Protein (1323 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PHLP2_HUMAN
DESCRIPTION: RecName: Full=PH domain leucine-rich repeat-containing protein phosphatase 2; EC=3.1.3.16; AltName: Full=PH domain leucine-rich repeat-containing protein phosphatase-like; Short=PHLPP-like;
FUNCTION: Protein phosphatase that mediates dephosphorylation of 'Ser-473' of AKT1, 'Ser-660' of PRKCB isoform beta-II and 'Ser- 657' of PRKCA. AKT1 regulates the balance between cell survival and apoptosis through a cascade that primarily alters the function of transcription factors that regulate pro- and antiapoptotic genes. Dephosphorylation of 'Ser-473' of AKT1 triggers apoptosis and decreases cell proliferation. Also controls the phosphorylation of AKT3. Dephosphorylation of PRKCA and PRKCB leads to their destabilization and degradation. Inhibits cancer cell proliferation and may act as a tumor suppressor.
CATALYTIC ACTIVITY: A phosphoprotein + H(2)O = a protein + phosphate.
COFACTOR: Binds 2 manganese ions per subunit (By similarity).
BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=4.13 mM for p-nitrophenyl phosphate;
SUBUNIT: Interacts with AKT1, AKT3 and PRKCB isoform beta-II.
SUBCELLULAR LOCATION: Cytoplasm. Membrane; Peripheral membrane protein. Nucleus. Note=In colorectal cancer tissue, expression is concentrated in the cytoplasm and nucleus.
TISSUE SPECIFICITY: In colorectal cancer tissue, expression is highest in the surface epithelium of normal colonic mucosa adjacent to the cancer tissue but is largely excluded from the crypt bases. Expression is lost or significantly decreased in 80% of tested tumors (at protein level).
SIMILARITY: Contains 22 LRR (leucine-rich) repeats.
SIMILARITY: Contains 1 PH domain.
SIMILARITY: Contains 1 PP2C-like domain.
SEQUENCE CAUTION: Sequence=BAA76775.2; Type=Erroneous initiation; Sequence=BAA91943.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PHLPP2
Diseases sorted by gene-association score: colorectal cancer (3)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 8.26 RPKM in Small Intestine - Terminal Ileum
Total median expression: 146.53 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -81.00379-0.214 Picture PostScript Text
3' UTR -1149.703966-0.290 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001611 - Leu-rich_rpt
IPR003591 - Leu-rich_rpt_typical-subtyp
IPR011993 - PH_like_dom
IPR001932 - PP2C-like

Pfam Domains:
PF00481 - Protein phosphatase 2C
PF12799 - Leucine Rich repeats (2 copies)
PF13516 - Leucine Rich repeat
PF13855 - Leucine rich repeat

SCOP Domains:
50729 - PH domain-like
52047 - RNI-like
52058 - L domain-like
52075 - Outer arm dynein light chain 1
81606 - PP2C-like

ModBase Predicted Comparative 3D Structure on Q6ZVD8
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details  Gene Details 
Gene SorterGene Sorter  Gene Sorter 
 RGD  WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003824 catalytic activity
GO:0004721 phosphoprotein phosphatase activity
GO:0004722 protein serine/threonine phosphatase activity
GO:0005515 protein binding
GO:0016787 hydrolase activity
GO:0046872 metal ion binding

Biological Process:
GO:0006470 protein dephosphorylation
GO:0007165 signal transduction
GO:0021766 hippocampus development

Cellular Component:
GO:0001917 photoreceptor inner segment
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0016020 membrane
GO:0042622 photoreceptor outer segment membrane


-  Descriptions from all associated GenBank mRNAs
  BC035267 - Homo sapiens PH domain and leucine rich repeat protein phosphatase-like, mRNA (cDNA clone IMAGE:4828359), partial cds.
AK001854 - Homo sapiens cDNA FLJ10992 fis, clone PLACE1002073, weakly similar to ADENYLATE CYCLASE (EC 4.6.1.1).
LP896041 - Sequence 905 from Patent EP3253886.
AB023148 - Homo sapiens KIAA0931 mRNA for KIAA0931 protein, complete cds.
BX647823 - Homo sapiens mRNA; cDNA DKFZp686F0186 (from clone DKFZp686F0186).
BX648157 - Homo sapiens mRNA; cDNA DKFZp686A2432 (from clone DKFZp686A2432).
BC129927 - Homo sapiens PH domain and leucine rich repeat protein phosphatase-like, mRNA (cDNA clone MGC:150693 IMAGE:40124720), complete cds.
BC129983 - Homo sapiens PH domain and leucine rich repeat protein phosphatase-like, mRNA (cDNA clone IMAGE:40124721), complete cds.
AM393067 - Synthetic construct Homo sapiens clone IMAGE:100002343 for hypothetical protein (PHLPPL gene).
AM393542 - Synthetic construct Homo sapiens clone IMAGE:100002342 for hypothetical protein (PHLPPL gene).
AB463166 - Synthetic construct DNA, clone: pF1KA0931, Homo sapiens PHLPPL gene for PH domain and leucine rich repeat protein phosphatase-like, without stop codon, in Flexi system.
AK001661 - Homo sapiens cDNA FLJ10799 fis, clone NT2RP4000728, highly similar to Homo sapiens mRNA for KIAA0931 protein.
LF208310 - JP 2014500723-A/15813: Polycomb-Associated Non-Coding RNAs.
JD332894 - Sequence 313918 from Patent EP1572962.
JD378879 - Sequence 359903 from Patent EP1572962.
JD318706 - Sequence 299730 from Patent EP1572962.
JD554286 - Sequence 535310 from Patent EP1572962.
JD246007 - Sequence 227031 from Patent EP1572962.
JD246006 - Sequence 227030 from Patent EP1572962.
JD501370 - Sequence 482394 from Patent EP1572962.
JD295533 - Sequence 276557 from Patent EP1572962.
JD201876 - Sequence 182900 from Patent EP1572962.
JD057520 - Sequence 38544 from Patent EP1572962.
JD232173 - Sequence 213197 from Patent EP1572962.
JD280421 - Sequence 261445 from Patent EP1572962.
LF374523 - JP 2014500723-A/182026: Polycomb-Associated Non-Coding RNAs.
JD091739 - Sequence 72763 from Patent EP1572962.
JD113716 - Sequence 94740 from Patent EP1572962.
JD177278 - Sequence 158302 from Patent EP1572962.
JD267652 - Sequence 248676 from Patent EP1572962.
JD357774 - Sequence 338798 from Patent EP1572962.
JD170817 - Sequence 151841 from Patent EP1572962.
JD300929 - Sequence 281953 from Patent EP1572962.
JD172089 - Sequence 153113 from Patent EP1572962.
JD093612 - Sequence 74636 from Patent EP1572962.
JD131211 - Sequence 112235 from Patent EP1572962.
JD081858 - Sequence 62882 from Patent EP1572962.
JD109759 - Sequence 90783 from Patent EP1572962.
JD059914 - Sequence 40938 from Patent EP1572962.
JD178155 - Sequence 159179 from Patent EP1572962.
JD037184 - Sequence 18208 from Patent EP1572962.
JD540245 - Sequence 521269 from Patent EP1572962.
JD110474 - Sequence 91498 from Patent EP1572962.
JD088108 - Sequence 69132 from Patent EP1572962.
JD089959 - Sequence 70983 from Patent EP1572962.
JD171254 - Sequence 152278 from Patent EP1572962.
JD427824 - Sequence 408848 from Patent EP1572962.
JD320374 - Sequence 301398 from Patent EP1572962.
JD505532 - Sequence 486556 from Patent EP1572962.
JD268232 - Sequence 249256 from Patent EP1572962.
JD285525 - Sequence 266549 from Patent EP1572962.
JD505531 - Sequence 486555 from Patent EP1572962.
JD312250 - Sequence 293274 from Patent EP1572962.
JD415026 - Sequence 396050 from Patent EP1572962.
JD536710 - Sequence 517734 from Patent EP1572962.
JD261019 - Sequence 242043 from Patent EP1572962.
JD379774 - Sequence 360798 from Patent EP1572962.
JD120607 - Sequence 101631 from Patent EP1572962.
JD415025 - Sequence 396049 from Patent EP1572962.
JD055576 - Sequence 36600 from Patent EP1572962.
JD147760 - Sequence 128784 from Patent EP1572962.
JD318060 - Sequence 299084 from Patent EP1572962.
JD072227 - Sequence 53251 from Patent EP1572962.
JD535494 - Sequence 516518 from Patent EP1572962.
JD257249 - Sequence 238273 from Patent EP1572962.
JD152518 - Sequence 133542 from Patent EP1572962.
JD258914 - Sequence 239938 from Patent EP1572962.
JD228616 - Sequence 209640 from Patent EP1572962.
JD544540 - Sequence 525564 from Patent EP1572962.
JD375309 - Sequence 356333 from Patent EP1572962.
JD208445 - Sequence 189469 from Patent EP1572962.
JD113624 - Sequence 94648 from Patent EP1572962.
DQ590755 - Homo sapiens piRNA piR-57867, complete sequence.
MA443887 - JP 2018138019-A/15813: Polycomb-Associated Non-Coding RNAs.
MA610100 - JP 2018138019-A/182026: Polycomb-Associated Non-Coding RNAs.
AK124678 - Homo sapiens cDNA FLJ42687 fis, clone BRAMY3001794, moderately similar to Rattus norvegicus SCN circadian oscillatory protein (Scop).
JD095783 - Sequence 76807 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q6ZVD8 (Reactome details) participates in the following event(s):

R-HSA-199425 PHLPP dephosphorylates S473 in AKT
R-HSA-199418 Negative regulation of the PI3K/AKT network
R-HSA-1257604 PIP3 activates AKT signaling
R-HSA-9006925 Intracellular signaling by second messengers
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: A1L374, ENST00000568954.1, ENST00000568954.2, ENST00000568954.3, ENST00000568954.4, KIAA0931, NM_015020, PHLP2_HUMAN, PHLPPL, Q6ZVD8, Q9NV17, Q9Y2E3, uc325ysn.1, uc325ysn.2
UCSC ID: ENST00000568954.5_13
RefSeq Accession: NM_015020.3
Protein: Q6ZVD8 (aka PHLP2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.