Human Gene PIAS3 (ENST00000393045.7_4) from GENCODE V47lift37
  Description: protein inhibitor of activated STAT 3 (from RefSeq NM_006099.3)
Gencode Transcript: ENST00000393045.7_4
Gencode Gene: ENSG00000131788.16_10
Transcript (Including UTRs)
   Position: hg19 chr1:145,575,988-145,586,546 Size: 10,559 Total Exon Count: 14 Strand: +
Coding Region
   Position: hg19 chr1:145,576,079-145,585,622 Size: 9,544 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:145,575,988-145,586,546)mRNA (may differ from genome)Protein (628 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMGIOMIMPubMedReactomeUniProtKB
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-  Comments and Description Text from UniProtKB
  ID: PIAS3_HUMAN
DESCRIPTION: RecName: Full=E3 SUMO-protein ligase PIAS3; EC=6.3.2.-; AltName: Full=Protein inhibitor of activated STAT protein 3;
FUNCTION: Functions as an E3-type small ubiquitin-like modifier (SUMO) ligase, stabilizing the interaction between UBE2I and the substrate, and as a SUMO-tethering factor. Plays a crucial role as a transcriptional coregulation in various cellular pathways, including the STAT pathway and the steroid hormone signaling pathway. Involved in regulating STAT3 signaling via inhibiting STAT3 DNA-binding and suppressing cell growth.
PATHWAY: Protein modification; protein sumoylation.
SUBUNIT: Monomer (By similarity). Binds SUMO1 and UBE2I. Interacts with BCL11A, HMGA2, IRF1, MITF and NCOA2. Interacts with STAT5; the interaction occurs on stimulation by PRL. Interacts with GFI1; the interaction relieves the inhibitory effect of PIAS3 on STAT3- mediated transcriptional activity (By similarity). Interacts with AR, PLAG1 and ZFHX3. Interacts with STAT3; the interaction occurs on stimulation by IL6, CNTF or OSM and inhibits the DNA binding activity of STAT3.
SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Note=Mainly cytoplasmic but shuttles between the nucleus and cytoplasm. Transported to the nucleus on interaction with phosphorylated STAT3. Colocalizes with GFI1 in nuclear dots (By similarity).
TISSUE SPECIFICITY: Isoform 1 is expressed in most tissues except thymus and small intestine. Isoform 3 is expressed only in brain, heart, thymus, muscle, lung, testis, lactating breast and embryonic stem cells.
INDUCTION: By dihydrotestosterone (DHT) in prostate cancer cells.
DOMAIN: The PINIT domain of PIAS3 is required for STAT3-PIAS3 interaction and for transloaction to the nucleus.
DOMAIN: The LXXLL motif is a transcriptional coregulator signature.
PTM: Sumoylated (By similarity).
SIMILARITY: Belongs to the PIAS family.
SIMILARITY: Contains 1 PINIT domain.
SIMILARITY: Contains 1 SAP domain.
SIMILARITY: Contains 1 SP-RING-type zinc finger.
SEQUENCE CAUTION: Sequence=BAA78533.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 33.35 RPKM in Cervix - Endocervix
Total median expression: 700.32 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -46.2091-0.508 Picture PostScript Text
3' UTR -296.52924-0.321 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR023321 - PINIT
IPR003034 - SAP_DNA-bd
IPR004181 - Znf_MIZ
IPR013083 - Znf_RING/FYVE/PHD

Pfam Domains:
PF02891 - MIZ/SP-RING zinc finger
PF14324 - PINIT domain

SCOP Domains:
68906 - SAP domain
57850 - RING/U-box

ModBase Predicted Comparative 3D Structure on Q9Y6X2
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0008022 protein C-terminus binding
GO:0008270 zinc ion binding
GO:0015459 potassium channel regulator activity
GO:0016740 transferase activity
GO:0019789 SUMO transferase activity
GO:0019899 enzyme binding
GO:0046872 metal ion binding
GO:0047485 protein N-terminus binding

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0009725 response to hormone
GO:0010628 positive regulation of gene expression
GO:0010629 negative regulation of gene expression
GO:0016925 protein sumoylation
GO:0033234 negative regulation of protein sumoylation
GO:0033235 positive regulation of protein sumoylation
GO:0045671 negative regulation of osteoclast differentiation
GO:0045838 positive regulation of membrane potential
GO:0045892 negative regulation of transcription, DNA-templated
GO:0071847 TNFSF11-mediated signaling pathway

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0016607 nuclear speck
GO:0030425 dendrite
GO:0045202 synapse


-  Descriptions from all associated GenBank mRNAs
  LF206250 - JP 2014500723-A/13753: Polycomb-Associated Non-Coding RNAs.
AK304039 - Homo sapiens cDNA FLJ59009 complete cds, highly similar to Protein inhibitor of activated STAT protein 3.
AK027557 - Homo sapiens cDNA FLJ14651 fis, clone NT2RP2002193, highly similar to Protein inhibitor of activated STAT protein 3.
DQ582571 - Homo sapiens piRNA piR-32683, complete sequence.
AK294231 - Homo sapiens cDNA FLJ58457 complete cds, highly similar to Protein inhibitor of activated STAT protein 3.
BC030556 - Homo sapiens protein inhibitor of activated STAT, 3, mRNA (cDNA clone MGC:40081 IMAGE:5218912), complete cds.
BC001154 - Homo sapiens protein inhibitor of activated STAT, 3, mRNA (cDNA clone MGC:1417 IMAGE:3528679), complete cds.
AB528548 - Synthetic construct DNA, clone: pF1KB6110, Homo sapiens PIAS3 gene for E3 SUMO-protein ligase PIAS3, without stop codon, in Flexi system.
AB021868 - Homo sapiens PIAS3 mRNA for protein inhibitor of activatied STAT3, complete cds.
CU674586 - Synthetic construct Homo sapiens gateway clone IMAGE:100017741 5' read PIAS3 mRNA.
KJ902099 - Synthetic construct Homo sapiens clone ccsbBroadEn_11493 PIAS3 gene, encodes complete protein.
CR457090 - Homo sapiens full open reading frame cDNA clone RZPDo834F0814D for gene PIAS3, protein inhibitor of activated STAT3; complete cds, incl. stopcodon.
BT007036 - Homo sapiens protein inhibitor of activated STAT3 mRNA, complete cds.
DQ893542 - Synthetic construct clone IMAGE:100006172; FLH164482.01X; RZPDo839G09162D protein inhibitor of activated STAT, 3 (PIAS3) gene, encodes complete protein.
DQ893796 - Synthetic construct Homo sapiens clone IMAGE:100008256; FLH164478.01L; RZPDo839G09161D protein inhibitor of activated STAT, 3 (PIAS3) gene, encodes complete protein.
DQ895037 - Synthetic construct Homo sapiens clone IMAGE:100009497; FLH180570.01L; RZPDo839D09133D protein inhibitor of activated STAT, 3 (PIAS3) gene, encodes complete protein.
EU176644 - Synthetic construct Homo sapiens clone IMAGE:100011587; FLH263639.01L; RZPDo839G04133D protein inhibitor of activated STAT, 3 (PIAS3) gene, encodes complete protein.
LF352667 - JP 2014500723-A/160170: Polycomb-Associated Non-Coding RNAs.
AK125158 - Homo sapiens cDNA FLJ43168 fis, clone FCBBF3004473, highly similar to Homo sapiens PIAS3 mRNA for protein inhibitor of activatied STAT3.
AK001030 - Homo sapiens cDNA FLJ10168 fis, clone HEMBA1003621.
AL122061 - Homo sapiens mRNA; cDNA DKFZp727A051 (from clone DKFZp727A051); partial cds.
AL133016 - Homo sapiens mRNA; cDNA DKFZp434O0617 (from clone DKFZp434O0617).
LF352668 - JP 2014500723-A/160171: Polycomb-Associated Non-Coding RNAs.
LF352669 - JP 2014500723-A/160172: Polycomb-Associated Non-Coding RNAs.
JD157824 - Sequence 138848 from Patent EP1572962.
LF352671 - JP 2014500723-A/160174: Polycomb-Associated Non-Coding RNAs.
JD161253 - Sequence 142277 from Patent EP1572962.
JD226412 - Sequence 207436 from Patent EP1572962.
JD380010 - Sequence 361034 from Patent EP1572962.
JD259538 - Sequence 240562 from Patent EP1572962.
JD428668 - Sequence 409692 from Patent EP1572962.
JD203118 - Sequence 184142 from Patent EP1572962.
JD556882 - Sequence 537906 from Patent EP1572962.
JD262637 - Sequence 243661 from Patent EP1572962.
JD503692 - Sequence 484716 from Patent EP1572962.
JD146071 - Sequence 127095 from Patent EP1572962.
JD262231 - Sequence 243255 from Patent EP1572962.
LF352672 - JP 2014500723-A/160175: Polycomb-Associated Non-Coding RNAs.
JD556685 - Sequence 537709 from Patent EP1572962.
JD357903 - Sequence 338927 from Patent EP1572962.
JD358015 - Sequence 339039 from Patent EP1572962.
JD235462 - Sequence 216486 from Patent EP1572962.
JD174990 - Sequence 156014 from Patent EP1572962.
JD182928 - Sequence 163952 from Patent EP1572962.
JD077647 - Sequence 58671 from Patent EP1572962.
JD100137 - Sequence 81161 from Patent EP1572962.
LF352673 - JP 2014500723-A/160176: Polycomb-Associated Non-Coding RNAs.
LF206251 - JP 2014500723-A/13754: Polycomb-Associated Non-Coding RNAs.
MA588244 - JP 2018138019-A/160170: Polycomb-Associated Non-Coding RNAs.
MA588245 - JP 2018138019-A/160171: Polycomb-Associated Non-Coding RNAs.
MA588246 - JP 2018138019-A/160172: Polycomb-Associated Non-Coding RNAs.
MA588248 - JP 2018138019-A/160174: Polycomb-Associated Non-Coding RNAs.
MA588249 - JP 2018138019-A/160175: Polycomb-Associated Non-Coding RNAs.
MA588250 - JP 2018138019-A/160176: Polycomb-Associated Non-Coding RNAs.
MA441827 - JP 2018138019-A/13753: Polycomb-Associated Non-Coding RNAs.
MA441828 - JP 2018138019-A/13754: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9Y6X2 (Reactome details) participates in the following event(s):

R-HSA-3232162 PIAS3 SUMOylates MITF with SUMO1
R-HSA-3465545 PIAS1,3,4 SUMOylate MTA1 with SUMO2,3
R-HSA-6790454 SUMOylation of XPC
R-HSA-3232118 SUMOylation of transcription factors
R-HSA-4615885 SUMOylation of DNA replication proteins
R-HSA-5696395 Formation of Incision Complex in GG-NER
R-HSA-3108232 SUMO E3 ligases SUMOylate target proteins
R-HSA-5696399 Global Genome Nucleotide Excision Repair (GG-NER)
R-HSA-2990846 SUMOylation
R-HSA-5696398 Nucleotide Excision Repair
R-HSA-597592 Post-translational protein modification
R-HSA-73894 DNA Repair
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000393045.1, ENST00000393045.2, ENST00000393045.3, ENST00000393045.4, ENST00000393045.5, ENST00000393045.6, NM_006099, PIAS3_HUMAN, Q9UFI3, Q9Y6X2, uc318vok.1, uc318vok.2
UCSC ID: ENST00000393045.7_4
RefSeq Accession: NM_006099.3
Protein: Q9Y6X2 (aka PIAS3_HUMAN or PIA3_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.