Human Gene PIP5K1A (ENST00000368888.9_7) from GENCODE V47lift37
  Description: phosphatidylinositol-4-phosphate 5-kinase type 1 alpha, transcript variant 1 (from RefSeq NM_001135638.2)
Gencode Transcript: ENST00000368888.9_7
Gencode Gene: ENSG00000143398.20_17
Transcript (Including UTRs)
   Position: hg19 chr1:151,171,028-151,222,007 Size: 50,980 Total Exon Count: 16 Strand: +
Coding Region
   Position: hg19 chr1:151,171,473-151,220,341 Size: 48,869 Coding Exon Count: 16 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:151,171,028-151,222,007)mRNA (may differ from genome)Protein (562 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PI51A_HUMAN
DESCRIPTION: RecName: Full=Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha; Short=PIP5K1-alpha; Short=PtdIns(4)P-5-kinase 1 alpha; EC=2.7.1.68; AltName: Full=68 kDa type I phosphatidylinositol 4-phosphate 5-kinase alpha; AltName: Full=Phosphatidylinositol 4-phosphate 5-kinase type I alpha; Short=PIP5KIalpha;
FUNCTION: Catalyzes the phosphorylation of phosphatidylinositol 4- phosphate (PtdIns4P) to form phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2). PtdIns(4,5)P2 is involved in a variety of cellular processes and is the substrate to form phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3), another second messenger. The majority of PtdIns(4,5)P2 is thought to occur via type I phosphatidylinositol 4-phosphate 5-kinases given the abundance of PtdIns4P. Participates in a variety of cellular processes such as actin cytoskeleton organization, cell adhesion, migration and phagocytosis. Required for membrane ruffling formation, actin organization and focal adhesion formation during directional cell migration by controlling integrin-induced translocation of RAC1 to the plasma membrane. Together with PIP5K1C is required for phagocytosis, but they regulate different types of actin remodeling at sequential steps. Promotes particle ingestion by activating WAS that induces Arp2/3 dependent actin polymerization at the nascent phagocytic cup. Together with PIP5K1B is required after stimulation of G-protein coupled receptors for stable platelet adhesion. Plays a role during calcium-induced keratinocyte differentiation. Recruited to the plasma membrane by the E-cadherin/beta-catenin complex where it provides the substrate PtdIns(4,5)P2 for the production of PtdIns(3,4,5)P3, diacylglycerol and inositol 1,4,5-trisphosphate that mobilize internal calcium and drive keratinocyte differentiation. Together with PIP5K1C have a role during embryogenesis. Functions also in the nucleus where acts as an activator of TUT1 adenylyltransferase activity in nuclear speckles, thereby regulating mRNA polyadenylation of a select set of mRNAs.
CATALYTIC ACTIVITY: ATP + 1-phosphatidyl-1D-myo-inositol 4- phosphate = ADP + 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate.
SUBUNIT: Interacts with RAC1 (By similarity). Interacts with TUT1. Forms a complex with CDH1/E-cadherin, CTNNB1/beta-catenin and CTNND1 at the plasma membrane upon calcium stimulation.
SUBCELLULAR LOCATION: Cell membrane. Cytoplasm (By similarity). Nucleus speckle. Cell projection, ruffle. Note=Colocalizes with RAC1 at actin-rich membrane ruffles. Localizes to nuclear speckles and associates with TUT1 to regulate polyadenylation of selected mRNAs.
TISSUE SPECIFICITY: Highly expressed in heart, placenta, skeletal muscle, kidney and pancreas. Detected at lower levels in brain, lung and liver.
SIMILARITY: Contains 1 PIPK domain.
CAUTION: There is confusion in the literature with phosphatidylinositol 4-phosphate 5-kinase type I nomenclature due to the fact that frequently mouse PIP5K1B is named Phosphatidylinositol 4-phosphate 5-kinase type I alpha.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 32.25 RPKM in Testis
Total median expression: 618.78 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -176.90445-0.398 Picture PostScript Text
3' UTR -517.501666-0.311 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR023610 - PInositol-4-P-5-kinase
IPR002498 - PInositol-4-P-5-kinase_core
IPR016034 - PInositol-4P-5-kinase_core_sub

Pfam Domains:
PF01504 - Phosphatidylinositol-4-phosphate 5-Kinase

SCOP Domains:
56104 - SAICAR synthase-like

ModBase Predicted Comparative 3D Structure on Q99755
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details  Gene Details 
Gene SorterGene Sorter  Gene Sorter 
 RGD  WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0000285 1-phosphatidylinositol-3-phosphate 5-kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016307 phosphatidylinositol phosphate kinase activity
GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity
GO:0016740 transferase activity
GO:0019900 kinase binding
GO:0052810 1-phosphatidylinositol-5-kinase activity
GO:0052811 1-phosphatidylinositol-3-phosphate 4-kinase activity
GO:0052812 phosphatidylinositol-3,4-bisphosphate 5-kinase activity

Biological Process:
GO:0006650 glycerophospholipid metabolic process
GO:0006661 phosphatidylinositol biosynthetic process
GO:0006909 phagocytosis
GO:0007165 signal transduction
GO:0008654 phospholipid biosynthetic process
GO:0010761 fibroblast migration
GO:0014066 regulation of phosphatidylinositol 3-kinase signaling
GO:0016310 phosphorylation
GO:0016477 cell migration
GO:0030216 keratinocyte differentiation
GO:0031532 actin cytoskeleton reorganization
GO:0046488 phosphatidylinositol metabolic process
GO:0046854 phosphatidylinositol phosphorylation
GO:0048041 focal adhesion assembly
GO:0060326 cell chemotaxis
GO:0072659 protein localization to plasma membrane
GO:0090630 activation of GTPase activity
GO:0097178 ruffle assembly

Cellular Component:
GO:0001726 ruffle
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0005925 focal adhesion
GO:0016020 membrane
GO:0016607 nuclear speck
GO:0030027 lamellipodium
GO:0032587 ruffle membrane
GO:0042995 cell projection
GO:0005847 mRNA cleavage and polyadenylation specificity factor complex


-  Descriptions from all associated GenBank mRNAs
  DQ656041 - Homo sapiens clone UGL018-A-G2, mRNA sequence.
AK309826 - Homo sapiens cDNA, FLJ99867.
AK295691 - Homo sapiens cDNA FLJ58137 complete cds, highly similar to Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha (EC 2.7.1.68).
BC007833 - Homo sapiens phosphatidylinositol-4-phosphate 5-kinase, type I, alpha, mRNA (cDNA clone MGC:14107 IMAGE:4098514), complete cds.
U78576 - Human 68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha mRNA, clone PIP5KIa2, complete cds.
BC007005 - Homo sapiens, clone IMAGE:3680651, mRNA.
U78577 - Human 68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha mRNA, clone PIP5KIa3, complete cds.
U78575 - Human 68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha mRNA, clone PIP5KIa1, complete cds.
JD503454 - Sequence 484478 from Patent EP1572962.
AK291015 - Homo sapiens cDNA FLJ78596 complete cds, highly similar to Homo sapiens phosphatidylinositol-4-phosphate 5-kinase, type I, alpha (PIP5K1A), mRNA.
JD476425 - Sequence 457449 from Patent EP1572962.
JD299816 - Sequence 280840 from Patent EP1572962.
JD163614 - Sequence 144638 from Patent EP1572962.
JD557179 - Sequence 538203 from Patent EP1572962.
CU675819 - Synthetic construct Homo sapiens gateway clone IMAGE:100018354 5' read PIP5K1A mRNA.
KJ897839 - Synthetic construct Homo sapiens clone ccsbBroadEn_07233 PIP5K1A gene, encodes complete protein.
KJ905346 - Synthetic construct Homo sapiens clone ccsbBroadEn_14891 PIP5K1A gene, encodes complete protein.
AB590546 - Synthetic construct DNA, clone: pFN21AE1986, Homo sapiens PIP5K1A gene for phosphatidylinositol-4-phosphate 5-kinase, type I, alpha, without stop codon, in Flexi system.
AK302268 - Homo sapiens cDNA FLJ59099 complete cds, highly similar to Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha (EC 2.7.1.68).
U78578 - Human 68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha mRNA, partial cds.
JD168603 - Sequence 149627 from Patent EP1572962.
JD333694 - Sequence 314718 from Patent EP1572962.
JD253899 - Sequence 234923 from Patent EP1572962.
JD402717 - Sequence 383741 from Patent EP1572962.
JD217252 - Sequence 198276 from Patent EP1572962.
JD370818 - Sequence 351842 from Patent EP1572962.
JD370819 - Sequence 351843 from Patent EP1572962.
JD069109 - Sequence 50133 from Patent EP1572962.
JD069110 - Sequence 50134 from Patent EP1572962.
JD454645 - Sequence 435669 from Patent EP1572962.
JD454646 - Sequence 435670 from Patent EP1572962.
JD086024 - Sequence 67048 from Patent EP1572962.
JD323801 - Sequence 304825 from Patent EP1572962.
JD240227 - Sequence 221251 from Patent EP1572962.
AF085856 - Homo sapiens full length insert cDNA clone YI58E12.
JD485416 - Sequence 466440 from Patent EP1572962.
JD485417 - Sequence 466441 from Patent EP1572962.
JD233738 - Sequence 214762 from Patent EP1572962.
JD315614 - Sequence 296638 from Patent EP1572962.
JD471700 - Sequence 452724 from Patent EP1572962.
JD471701 - Sequence 452725 from Patent EP1572962.
JD335028 - Sequence 316052 from Patent EP1572962.
JD450648 - Sequence 431672 from Patent EP1572962.
JD559334 - Sequence 540358 from Patent EP1572962.
JD258203 - Sequence 239227 from Patent EP1572962.
JD130215 - Sequence 111239 from Patent EP1572962.
JD331381 - Sequence 312405 from Patent EP1572962.
JD041835 - Sequence 22859 from Patent EP1572962.
JD383353 - Sequence 364377 from Patent EP1572962.
JD544898 - Sequence 525922 from Patent EP1572962.
JD494363 - Sequence 475387 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-6351 - D-myo-inositol (1,4,5)-trisphosphate biosynthesis
PWY-6352 - 3-phosphoinositide biosynthesis
PWY-6371 - superpathway of inositol phosphate compounds

BioCarta from NCI Cancer Genome Anatomy Project
h_rhoPathway - Rho cell motility signaling pathway

Reactome (by CSHL, EBI, and GO)

Protein Q99755 (Reactome details) participates in the following event(s):

R-HSA-1676082 PI4P is phosphorylated to PI(4,5)P2 by PIP5K1A-C at the plasma membrane
R-HSA-1675773 PI(3,4)P2 is phosphorylated to PI(3,4,5)P3 by PIP5K1A-C at the plasma membrane
R-HSA-1676145 PI3P is phosphorylated to PI(3,4)P2 by PIP4K2/5K1 at the plasma membrane
R-HSA-1676134 PI3P is phosphorylated to PI(3,5)P2 by PIP5K1A/B at the plasma membrane
R-HSA-1675810 PI is phosphorylated to PI5P by PIP5K1A/B at the plasma membrane
R-HSA-1660499 Synthesis of PIPs at the plasma membrane
R-HSA-6811558 PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling
R-HSA-1483255 PI Metabolism
R-HSA-199418 Negative regulation of the PI3K/AKT network
R-HSA-1483257 Phospholipid metabolism
R-HSA-1257604 PIP3 activates AKT signaling
R-HSA-556833 Metabolism of lipids
R-HSA-9006925 Intracellular signaling by second messengers
R-HSA-1430728 Metabolism
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: A8K4Q0, B4DIN0, ENST00000368888.1, ENST00000368888.2, ENST00000368888.3, ENST00000368888.4, ENST00000368888.5, ENST00000368888.6, ENST00000368888.7, ENST00000368888.8, NM_001135638, PI51A_HUMAN, PIP5K1A , Q99754, Q99755, Q99756, uc318hdq.1, uc318hdq.2
UCSC ID: ENST00000368888.9_7
RefSeq Accession: NM_001135638.2
Protein: Q99755 (aka PI51A_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.