Human Gene PJA2 (ENST00000361189.7_7) from GENCODE V47lift37
  Description: praja ring finger ubiquitin ligase 2 (from RefSeq NM_014819.5)
Gencode Transcript: ENST00000361189.7_7
Gencode Gene: ENSG00000198961.10_9
Transcript (Including UTRs)
   Position: hg19 chr5:108,670,423-108,745,675 Size: 75,253 Total Exon Count: 10 Strand: -
Coding Region
   Position: hg19 chr5:108,672,932-108,719,134 Size: 46,203 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:108,670,423-108,745,675)mRNA (may differ from genome)Protein (708 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIPubMedReactomeUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PJA2_HUMAN
DESCRIPTION: RecName: Full=E3 ubiquitin-protein ligase Praja-2; Short=Praja2; EC=6.3.2.-; AltName: Full=RING finger protein 131;
FUNCTION: Has E2-dependent E3 ubiquitin-protein ligase activity. Responsible for ubiquitination of cAMP-dependent protein kinase type I and type II-alpha/beta regulatory subunits and for targeting them for proteasomal degradation. Essential for PKA- mediated long-term memory processes.
PATHWAY: Protein modification; protein ubiquitination.
SUBUNIT: Binds ubiquitin-conjugating enzymes (E2s). In vitro, interacts with the ubiquitin-conjugating enzyme, UBE2D2. The phosphorylated form interacts with PRKAR1A, PRKAR2A and PRKAR2B. Binds the catalytic subunits of cAMP-dependent protein kinase.
SUBCELLULAR LOCATION: Cytoplasm. Cell membrane. Endoplasmic reticulum membrane; Peripheral membrane protein. Golgi apparatus membrane; Peripheral membrane protein. Cell junction, synapse (By similarity). Cell junction, synapse, postsynaptic cell membrane, postsynaptic density (By similarity). Note=Localizes at the cytoplasmic side of endoplasmic reticulum and Golgi apparatus. Expressed in the postsynaptic density region of synapses (By similarity). Co-localizes with PRKAR2A and PRKAR2B in the cytoplasm and the cell membrane.
SIMILARITY: Contains 1 RING-type zinc finger.
SEQUENCE CAUTION: Sequence=BAA23710.2; Type=Erroneous initiation; Note=Translation N-terminally shortened;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 86.09 RPKM in Brain - Frontal Cortex (BA9)
Total median expression: 1830.53 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -86.70220-0.394 Picture PostScript Text
3' UTR -577.002509-0.230 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001841 - Znf_RING
IPR013083 - Znf_RING/FYVE/PHD

Pfam Domains:
PF00097 - Zinc finger, C3HC4 type (RING finger)
PF13445 - RING-type zinc-finger
PF13639 - Ring finger domain

SCOP Domains:
57850 - RING/U-box

ModBase Predicted Comparative 3D Structure on O43164
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologGenome Browser
Gene DetailsGene Details   Gene Details
Gene SorterGene Sorter   Gene Sorter
 RGDEnsembl  SGD
     Protein Sequence
     Alignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004842 ubiquitin-protein transferase activity
GO:0016740 transferase activity
GO:0034236 protein kinase A catalytic subunit binding
GO:0034237 protein kinase A regulatory subunit binding
GO:0046872 metal ion binding
GO:0061630 ubiquitin protein ligase activity

Biological Process:
GO:0007616 long-term memory
GO:0010738 regulation of protein kinase A signaling
GO:0016567 protein ubiquitination
GO:0035329 hippo signaling

Cellular Component:
GO:0000139 Golgi membrane
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0005794 Golgi apparatus
GO:0005886 plasma membrane
GO:0014069 postsynaptic density
GO:0016020 membrane
GO:0030054 cell junction
GO:0045111 intermediate filament cytoskeleton
GO:0045202 synapse
GO:0045211 postsynaptic membrane


-  Descriptions from all associated GenBank mRNAs
  CR749579 - Homo sapiens mRNA; cDNA DKFZp779F2158 (from clone DKFZp779F2158).
LF385215 - JP 2014500723-A/192718: Polycomb-Associated Non-Coding RNAs.
LP895532 - Sequence 396 from Patent EP3253886.
AB007898 - Homo sapiens KIAA0438 mRNA.
BC030826 - Homo sapiens praja ring finger 2, mRNA (cDNA clone MGC:26115 IMAGE:4811738), complete cds.
JD507682 - Sequence 488706 from Patent EP1572962.
LF341819 - JP 2014500723-A/149322: Polycomb-Associated Non-Coding RNAs.
JD556493 - Sequence 537517 from Patent EP1572962.
JD528569 - Sequence 509593 from Patent EP1572962.
JD146734 - Sequence 127758 from Patent EP1572962.
JD166811 - Sequence 147835 from Patent EP1572962.
JD298800 - Sequence 279824 from Patent EP1572962.
JD232313 - Sequence 213337 from Patent EP1572962.
LF341820 - JP 2014500723-A/149323: Polycomb-Associated Non-Coding RNAs.
JD302572 - Sequence 283596 from Patent EP1572962.
JD330690 - Sequence 311714 from Patent EP1572962.
JD082897 - Sequence 63921 from Patent EP1572962.
JD332800 - Sequence 313824 from Patent EP1572962.
JD236927 - Sequence 217951 from Patent EP1572962.
JD037231 - Sequence 18255 from Patent EP1572962.
JD324658 - Sequence 305682 from Patent EP1572962.
JD209900 - Sequence 190924 from Patent EP1572962.
AK291759 - Homo sapiens cDNA FLJ76892 complete cds, highly similar to Homo sapiens praja 2, RING-H2 motif containing (PJA2), mRNA.
JD463577 - Sequence 444601 from Patent EP1572962.
JD352284 - Sequence 333308 from Patent EP1572962.
JD504264 - Sequence 485288 from Patent EP1572962.
JD429050 - Sequence 410074 from Patent EP1572962.
JD045059 - Sequence 26083 from Patent EP1572962.
JD087642 - Sequence 68666 from Patent EP1572962.
JD188800 - Sequence 169824 from Patent EP1572962.
JD502483 - Sequence 483507 from Patent EP1572962.
JD048237 - Sequence 29261 from Patent EP1572962.
LF341821 - JP 2014500723-A/149324: Polycomb-Associated Non-Coding RNAs.
AB383883 - Synthetic construct DNA, clone: pF1KSDA0438, Homo sapiens PJA2 gene for E3 ubiquitin-protein ligase Praja2, complete cds, without stop codon, in Flexi system.
KJ898106 - Synthetic construct Homo sapiens clone ccsbBroadEn_07500 PJA2 gene, encodes complete protein.
AB636596 - Homo sapiens Pe7Fe14 mRNA for PJA2/FER fusion protein, complete cds.
DQ595328 - Homo sapiens piRNA piR-61440, complete sequence.
LF341825 - JP 2014500723-A/149328: Polycomb-Associated Non-Coding RNAs.
LF341826 - JP 2014500723-A/149329: Polycomb-Associated Non-Coding RNAs.
JD023511 - Sequence 4535 from Patent EP1572962.
LF341828 - JP 2014500723-A/149331: Polycomb-Associated Non-Coding RNAs.
LF341829 - JP 2014500723-A/149332: Polycomb-Associated Non-Coding RNAs.
LF341830 - JP 2014500723-A/149333: Polycomb-Associated Non-Coding RNAs.
LF341831 - JP 2014500723-A/149334: Polycomb-Associated Non-Coding RNAs.
LF341832 - JP 2014500723-A/149335: Polycomb-Associated Non-Coding RNAs.
LF341833 - JP 2014500723-A/149336: Polycomb-Associated Non-Coding RNAs.
LF341834 - JP 2014500723-A/149337: Polycomb-Associated Non-Coding RNAs.
JD165930 - Sequence 146954 from Patent EP1572962.
LF341836 - JP 2014500723-A/149339: Polycomb-Associated Non-Coding RNAs.
JD189480 - Sequence 170504 from Patent EP1572962.
JD056223 - Sequence 37247 from Patent EP1572962.
JD128940 - Sequence 109964 from Patent EP1572962.
JD271279 - Sequence 252303 from Patent EP1572962.
JD458430 - Sequence 439454 from Patent EP1572962.
MA620792 - JP 2018138019-A/192718: Polycomb-Associated Non-Coding RNAs.
MA577396 - JP 2018138019-A/149322: Polycomb-Associated Non-Coding RNAs.
MA577397 - JP 2018138019-A/149323: Polycomb-Associated Non-Coding RNAs.
MA577398 - JP 2018138019-A/149324: Polycomb-Associated Non-Coding RNAs.
MA577402 - JP 2018138019-A/149328: Polycomb-Associated Non-Coding RNAs.
MA577403 - JP 2018138019-A/149329: Polycomb-Associated Non-Coding RNAs.
MA577405 - JP 2018138019-A/149331: Polycomb-Associated Non-Coding RNAs.
MA577406 - JP 2018138019-A/149332: Polycomb-Associated Non-Coding RNAs.
MA577407 - JP 2018138019-A/149333: Polycomb-Associated Non-Coding RNAs.
MA577408 - JP 2018138019-A/149334: Polycomb-Associated Non-Coding RNAs.
MA577409 - JP 2018138019-A/149335: Polycomb-Associated Non-Coding RNAs.
MA577410 - JP 2018138019-A/149336: Polycomb-Associated Non-Coding RNAs.
MA577411 - JP 2018138019-A/149337: Polycomb-Associated Non-Coding RNAs.
MA577413 - JP 2018138019-A/149339: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O43164 (Reactome details) participates in the following event(s):

R-HSA-983157 Interaction of E3 with substrate and E2-Ub complex
R-HSA-983147 Release of E3 from polyubiquitinated substrate
R-HSA-983140 Transfer of Ub from E2 to substrate and release of E2
R-HSA-983168 Antigen processing: Ubiquitination & Proteasome degradation
R-HSA-983169 Class I MHC mediated antigen processing & presentation
R-HSA-1280218 Adaptive Immune System
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: A8K6U4, D3DSZ5, ENST00000361189.1, ENST00000361189.2, ENST00000361189.3, ENST00000361189.4, ENST00000361189.5, ENST00000361189.6, KIAA0438, NM_014819, O43164, PJA2_HUMAN, Q68D49, Q8N1G5, RNF131, uc318bxn.1, uc318bxn.2
UCSC ID: ENST00000361189.7_7
RefSeq Accession: NM_014819.5
Protein: O43164 (aka PJA2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.