Human Gene PLEKHA2 (ENST00000617275.5_4) from GENCODE V47lift37
  Description: pleckstrin homology domain containing A2 (from RefSeq NM_021623.2)
Gencode Transcript: ENST00000617275.5_4
Gencode Gene: ENSG00000169499.15_15
Transcript (Including UTRs)
   Position: hg19 chr8:38,758,864-38,831,431 Size: 72,568 Total Exon Count: 13 Strand: +
Coding Region
   Position: hg19 chr8:38,775,448-38,827,302 Size: 51,855 Coding Exon Count: 12 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathways
Other NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:38,758,864-38,831,431)mRNA (may differ from genome)Protein (425 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MGIOMIMPubMedReactomeUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PKHA2_HUMAN
DESCRIPTION: RecName: Full=Pleckstrin homology domain-containing family A member 2; Short=PH domain-containing family A member 2; AltName: Full=Tandem PH domain-containing protein 2; Short=TAPP-2;
FUNCTION: Binds specifically to phosphatidylinositol 3,4- diphosphate (PtdIns3,4P2), but not to other phosphoinositides. May recruit other proteins to the plasma membrane (By similarity).
SUBUNIT: Binds MPDZ and PTPN13 (By similarity).
SUBCELLULAR LOCATION: Cytoplasm (By similarity). Cell membrane; Peripheral membrane protein (By similarity). Nucleus (By similarity). Note=Locates to the plasma membrane after treatments that stimulate the production of PtdIns3,4P2 (By similarity).
TISSUE SPECIFICITY: Highly expressed in heart, kidney, spleen and peripheral blood leukocytes. Detected at lower levels in brain, skeletal muscle, colon, thymus, liver, small intestine, placenta and lung.
SIMILARITY: Contains 2 PH domains.
SEQUENCE CAUTION: Sequence=AAG15201.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -55.00123-0.447 Picture PostScript Text
3' UTR -1423.004129-0.345 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011993 - PH_like_dom
IPR001849 - Pleckstrin_homology

Pfam Domains:
PF00169 - PH domain

SCOP Domains:
50729 - PH domain-like

ModBase Predicted Comparative 3D Structure on Q9HB19
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001968 fibronectin binding
GO:0005515 protein binding
GO:0008289 lipid binding
GO:0030165 PDZ domain binding
GO:0035091 phosphatidylinositol binding
GO:0043236 laminin binding
GO:0043325 phosphatidylinositol-3,4-bisphosphate binding

Biological Process:
GO:0001954 positive regulation of cell-matrix adhesion
GO:0006661 phosphatidylinositol biosynthetic process

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0032991 macromolecular complex


-  Descriptions from all associated GenBank mRNAs
  LF208057 - JP 2014500723-A/15560: Polycomb-Associated Non-Coding RNAs.
AK098787 - Homo sapiens cDNA FLJ25921 fis, clone CBR05028, highly similar to Homo sapiens Tandem PH Domain Containing Protein-2 mRNA.
AK296068 - Homo sapiens cDNA FLJ51480 complete cds, highly similar to Pleckstrin homology domain-containing familyA member 2.
AK291842 - Homo sapiens cDNA FLJ75843 complete cds, highly similar to Homo sapiens pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 (PLEKHA2), mRNA.
AF286164 - Homo sapiens Tandem PH Domain Containing Protein-2 mRNA, partial cds.
BC166639 - Synthetic construct Homo sapiens clone IMAGE:100066365, MGC:195502 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 (PLEKHA2) mRNA, encodes complete protein.
MA443634 - JP 2018138019-A/15560: Polycomb-Associated Non-Coding RNAs.
LF371744 - JP 2014500723-A/179247: Polycomb-Associated Non-Coding RNAs.
LF371743 - JP 2014500723-A/179246: Polycomb-Associated Non-Coding RNAs.
MA607321 - JP 2018138019-A/179247: Polycomb-Associated Non-Coding RNAs.
MA607320 - JP 2018138019-A/179246: Polycomb-Associated Non-Coding RNAs.
LF371734 - JP 2014500723-A/179237: Polycomb-Associated Non-Coding RNAs.
LF371731 - JP 2014500723-A/179234: Polycomb-Associated Non-Coding RNAs.
LF371729 - JP 2014500723-A/179232: Polycomb-Associated Non-Coding RNAs.
AK309020 - Homo sapiens cDNA, FLJ99061.
LF371728 - JP 2014500723-A/179231: Polycomb-Associated Non-Coding RNAs.
LF371726 - JP 2014500723-A/179229: Polycomb-Associated Non-Coding RNAs.
LF371722 - JP 2014500723-A/179225: Polycomb-Associated Non-Coding RNAs.
LF208056 - JP 2014500723-A/15559: Polycomb-Associated Non-Coding RNAs.
LF371721 - JP 2014500723-A/179224: Polycomb-Associated Non-Coding RNAs.
JD112111 - Sequence 93135 from Patent EP1572962.
JD488592 - Sequence 469616 from Patent EP1572962.
JD395786 - Sequence 376810 from Patent EP1572962.
JD144718 - Sequence 125742 from Patent EP1572962.
LF371720 - JP 2014500723-A/179223: Polycomb-Associated Non-Coding RNAs.
LF371719 - JP 2014500723-A/179222: Polycomb-Associated Non-Coding RNAs.
LF371718 - JP 2014500723-A/179221: Polycomb-Associated Non-Coding RNAs.
LF371717 - JP 2014500723-A/179220: Polycomb-Associated Non-Coding RNAs.
LF371716 - JP 2014500723-A/179219: Polycomb-Associated Non-Coding RNAs.
AK057205 - Homo sapiens cDNA FLJ32643 fis, clone SYNOV2001212.
LF371715 - JP 2014500723-A/179218: Polycomb-Associated Non-Coding RNAs.
JD367670 - Sequence 348694 from Patent EP1572962.
JD024795 - Sequence 5819 from Patent EP1572962.
JD027592 - Sequence 8616 from Patent EP1572962.
LF371714 - JP 2014500723-A/179217: Polycomb-Associated Non-Coding RNAs.
LF212191 - JP 2014500723-A/19694: Polycomb-Associated Non-Coding RNAs.
JD160221 - Sequence 141245 from Patent EP1572962.
JD523941 - Sequence 504965 from Patent EP1572962.
MA607311 - JP 2018138019-A/179237: Polycomb-Associated Non-Coding RNAs.
MA607308 - JP 2018138019-A/179234: Polycomb-Associated Non-Coding RNAs.
MA607306 - JP 2018138019-A/179232: Polycomb-Associated Non-Coding RNAs.
MA607305 - JP 2018138019-A/179231: Polycomb-Associated Non-Coding RNAs.
MA607303 - JP 2018138019-A/179229: Polycomb-Associated Non-Coding RNAs.
MA607299 - JP 2018138019-A/179225: Polycomb-Associated Non-Coding RNAs.
MA607298 - JP 2018138019-A/179224: Polycomb-Associated Non-Coding RNAs.
MA607297 - JP 2018138019-A/179223: Polycomb-Associated Non-Coding RNAs.
MA607296 - JP 2018138019-A/179222: Polycomb-Associated Non-Coding RNAs.
MA607295 - JP 2018138019-A/179221: Polycomb-Associated Non-Coding RNAs.
MA607294 - JP 2018138019-A/179220: Polycomb-Associated Non-Coding RNAs.
MA607293 - JP 2018138019-A/179219: Polycomb-Associated Non-Coding RNAs.
MA607292 - JP 2018138019-A/179218: Polycomb-Associated Non-Coding RNAs.
MA607291 - JP 2018138019-A/179217: Polycomb-Associated Non-Coding RNAs.
MA443633 - JP 2018138019-A/15559: Polycomb-Associated Non-Coding RNAs.
MA447768 - JP 2018138019-A/19694: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9HB19 (Reactome details) participates in the following event(s):

R-HSA-8870332 PTPN13:PLEKHA1,2 bind PI(3,4)P2
R-HSA-1660499 Synthesis of PIPs at the plasma membrane
R-HSA-1483255 PI Metabolism
R-HSA-1483257 Phospholipid metabolism
R-HSA-556833 Metabolism of lipids
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: A8K727, ENST00000617275.1, ENST00000617275.2, ENST00000617275.3, ENST00000617275.4, NM_021623, PKHA2_HUMAN, Q9HB19, TAPP2, uc327qzq.1, uc327qzq.2
UCSC ID: ENST00000617275.5_4
RefSeq Accession: NM_021623.2
Protein: Q9HB19 (aka PKHA2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.