Human Gene PLK2 (ENST00000274289.8_7) from GENCODE V47lift37
  Description: polo like kinase 2, transcript variant 1 (from RefSeq NM_006622.4)
Gencode Transcript: ENST00000274289.8_7
Gencode Gene: ENSG00000145632.15_9
Transcript (Including UTRs)
   Position: hg19 chr5:57,749,809-57,755,913 Size: 6,105 Total Exon Count: 14 Strand: -
Coding Region
   Position: hg19 chr5:57,750,410-57,755,786 Size: 5,377 Coding Exon Count: 14 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:57,749,809-57,755,913)mRNA (may differ from genome)Protein (685 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PLK2_HUMAN
DESCRIPTION: RecName: Full=Serine/threonine-protein kinase PLK2; EC=2.7.11.21; AltName: Full=Polo-like kinase 2; Short=PLK-2; Short=hPlk2; AltName: Full=Serine/threonine-protein kinase SNK; Short=hSNK; AltName: Full=Serum-inducible kinase;
FUNCTION: Tumor suppressor serine/threonine-protein kinase involved in synaptic plasticity, centriole duplication and G1/S phase transition. Polo-like kinases act by binding and phosphorylating proteins are that already phosphorylated on a specific motif recognized by the POLO box domains. Phosphorylates CENPJ, NPM1, RAPGEF2, RASGRF1, SNCA, SIPA1L1 and SYNGAP1. Plays a key role in synaptic plasticity and memory by regulating the Ras and Rap protein signaling: required for overactivity-dependent spine remodeling by phosphorylating the Ras activator RASGRF1 and the Rap inhibitor SIPA1L1 leading to their degradation by the proteasome. Conversely, phosphorylates the Rap activator RAPGEF2 and the Ras inhibitor SYNGAP1, promoting their activity. Also regulates synaptic plasticity independently of kinase activity, via its interaction with NSF that disrupts the interaction between NSF and the GRIA2 subunit of AMPARs, leading to a rapid rundown of AMPAR-mediated current that occludes long term depression. Required for procentriole formation and centriole duplication by phosphorylating CENPJ and NPM1, respectively. Its induction by p53/TP53 suggests that it may participate in the mitotic checkpoint following stress.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
ENZYME REGULATION: Activated by phosphorylation of Thr-239. Once activated, activity is stimulated by binding target proteins (By similarity).
SUBUNIT: Interacts with NSF; causing NSF dissociation from GRIA2. Interacts with CIB1 (By similarity).
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton, centrosome, centriole. Cell projection, dendrite (By similarity). Note=Localizes to centrosomes during early G1 phase where it only associates to the mother centriole and then distributes equally to both mother and daughter centrioles at the onset of S phase.
TISSUE SPECIFICITY: Expressed at higher level in the fetal lung, kidney, spleen and heart.
INDUCTION: Directly regulated by p53/TP53. Negatively regulated by miR-126.
DOMAIN: The POLO box domains act as phosphopeptide-binding module that recongnize and bind serine-[phosphothreonine/phosphoserine]- (proline/X) motifs. PLK2 recognizes and binds docking proteins that are already phosphorylated on these motifs, and then phosphorylates them (By similarity).
PTM: Catalytic activity is enhanced by phosphorylation of Thr-239 (By similarity).
MISCELLANEOUS: There are indications that PLK2 might act as a tumor suppressor: PLK2 is significantly down-regulated in a wide range of acute myeloid leukemias (AMLs) and B-cell lymphomas due to aberrant cytosine methylation in the CpG island located at the 5' of the PLK2 gene (PubMed:16160013, PubMed:21340720). Moreover, miR-126, a microRNA that negatively regulates PLK2 is up-regulated in AMLs, suggesting that PLK2 down-regulation by miR-126 could also contribute to leukemogenesis (PubMed:18832181).
SIMILARITY: Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. CDC5/Polo subfamily.
SIMILARITY: Contains 2 POLO box domains.
SIMILARITY: Contains 1 protein kinase domain.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PLK2
Diseases sorted by gene-association score: kummell's disease (16)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 67.25 RPKM in Spleen
Total median expression: 830.78 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -53.50127-0.421 Picture PostScript Text
3' UTR -160.40601-0.267 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR000959 - POLO_box_duplicated_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF00659 - POLO box duplicated region
PF07714 - Protein tyrosine and serine/threonine kinase

SCOP Domains:
56112 - Protein kinase-like (PK-like)
82615 - Polo-box domain

ModBase Predicted Comparative 3D Structure on Q9NYY3
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0043008 ATP-dependent protein binding
GO:0044877 macromolecular complex binding

Biological Process:
GO:0000082 G1/S transition of mitotic cell cycle
GO:0000278 mitotic cell cycle
GO:0006468 protein phosphorylation
GO:0006977 DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0007052 mitotic spindle organization
GO:0007093 mitotic cell cycle checkpoint
GO:0007265 Ras protein signal transduction
GO:0007613 memory
GO:0010508 positive regulation of autophagy
GO:0016310 phosphorylation
GO:0016525 negative regulation of angiogenesis
GO:0018105 peptidyl-serine phosphorylation
GO:0032092 positive regulation of protein binding
GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032486 Rap protein signal transduction
GO:0043066 negative regulation of apoptotic process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0045732 positive regulation of protein catabolic process
GO:0046599 regulation of centriole replication
GO:0048167 regulation of synaptic plasticity
GO:0060291 long-term synaptic potentiation
GO:0060292 long term synaptic depression
GO:0061000 negative regulation of dendritic spine development
GO:0071866 negative regulation of apoptotic process in bone marrow
GO:0090050 positive regulation of cell migration involved in sprouting angiogenesis
GO:2000773 negative regulation of cellular senescence

Cellular Component:
GO:0000785 chromatin
GO:0005622 intracellular
GO:0005737 cytoplasm
GO:0005813 centrosome
GO:0005814 centriole
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0030425 dendrite
GO:0042995 cell projection


-  Descriptions from all associated GenBank mRNAs
  LF209906 - JP 2014500723-A/17409: Polycomb-Associated Non-Coding RNAs.
AF223574 - Homo sapiens serum-inducible kinase (SNK) mRNA, complete cds.
AF059617 - Homo sapiens serum-inducible kinase mRNA, complete cds.
AK027851 - Homo sapiens cDNA FLJ14945 fis, clone PLACE1011923, highly similar to Homo sapiens serum-inducible kinase mRNA.
AK098163 - Homo sapiens cDNA FLJ40844 fis, clone TRACH2014356, highly similar to SERINE/THREONINE-PROTEIN KINASE SNK (EC 2.7.1.-).
LF332589 - JP 2014500723-A/140092: Polycomb-Associated Non-Coding RNAs.
BC013879 - Homo sapiens polo-like kinase 2 (Drosophila), mRNA (cDNA clone MGC:10589 IMAGE:3831747), complete cds.
JD300551 - Sequence 281575 from Patent EP1572962.
U85755 - Human serum-inducible kinase mRNA, partial cds.
JD177090 - Sequence 158114 from Patent EP1572962.
JD284185 - Sequence 265209 from Patent EP1572962.
JD045610 - Sequence 26634 from Patent EP1572962.
JD155056 - Sequence 136080 from Patent EP1572962.
JD530747 - Sequence 511771 from Patent EP1572962.
JD550138 - Sequence 531162 from Patent EP1572962.
JD064938 - Sequence 45962 from Patent EP1572962.
JD022524 - Sequence 3548 from Patent EP1572962.
JD028733 - Sequence 9757 from Patent EP1572962.
JD119141 - Sequence 100165 from Patent EP1572962.
JD203971 - Sequence 184995 from Patent EP1572962.
AK312505 - Homo sapiens cDNA, FLJ92869.
KJ898282 - Synthetic construct Homo sapiens clone ccsbBroadEn_07676 PLK2 gene, encodes complete protein.
KJ905401 - Synthetic construct Homo sapiens clone ccsbBroadEn_14975 PLK2 gene, encodes complete protein.
DQ893653 - Synthetic construct clone IMAGE:100006283; FLH188079.01X; RZPDo839G03150D polo-like kinase 2 (Drosophila) (PLK2) gene, encodes complete protein.
DQ895830 - Synthetic construct Homo sapiens clone IMAGE:100010290; FLH188075.01L; RZPDo839G03149D polo-like kinase 2 (Drosophila) (PLK2) gene, encodes complete protein.
AB385029 - Synthetic construct DNA, clone: pF1KB5083, Homo sapiens PLK2 gene for serine/threonine-protein kinase PLK2, complete cds, without stop codon, in Flexi system.
AK297298 - Homo sapiens cDNA FLJ54984 complete cds, highly similar to Serine/threonine-protein kinase PLK2 (EC2.7.11.21).
LF332588 - JP 2014500723-A/140091: Polycomb-Associated Non-Coding RNAs.
LF332587 - JP 2014500723-A/140090: Polycomb-Associated Non-Coding RNAs.
LF332586 - JP 2014500723-A/140089: Polycomb-Associated Non-Coding RNAs.
LF212550 - JP 2014500723-A/20053: Polycomb-Associated Non-Coding RNAs.
AK304746 - Homo sapiens cDNA FLJ58895 complete cds, highly similar to Serine/threonine-protein kinase PLK2 (EC 2.7.11.21).
LF332584 - JP 2014500723-A/140087: Polycomb-Associated Non-Coding RNAs.
LF332583 - JP 2014500723-A/140086: Polycomb-Associated Non-Coding RNAs.
LF332581 - JP 2014500723-A/140084: Polycomb-Associated Non-Coding RNAs.
LF332580 - JP 2014500723-A/140083: Polycomb-Associated Non-Coding RNAs.
JD459599 - Sequence 440623 from Patent EP1572962.
LF332579 - JP 2014500723-A/140082: Polycomb-Associated Non-Coding RNAs.
JD243383 - Sequence 224407 from Patent EP1572962.
MA568166 - JP 2018138019-A/140092: Polycomb-Associated Non-Coding RNAs.
MA568165 - JP 2018138019-A/140091: Polycomb-Associated Non-Coding RNAs.
MA568164 - JP 2018138019-A/140090: Polycomb-Associated Non-Coding RNAs.
MA568163 - JP 2018138019-A/140089: Polycomb-Associated Non-Coding RNAs.
MA568161 - JP 2018138019-A/140087: Polycomb-Associated Non-Coding RNAs.
MA568160 - JP 2018138019-A/140086: Polycomb-Associated Non-Coding RNAs.
MA568158 - JP 2018138019-A/140084: Polycomb-Associated Non-Coding RNAs.
MA568157 - JP 2018138019-A/140083: Polycomb-Associated Non-Coding RNAs.
MA568156 - JP 2018138019-A/140082: Polycomb-Associated Non-Coding RNAs.
MA445483 - JP 2018138019-A/17409: Polycomb-Associated Non-Coding RNAs.
MA448127 - JP 2018138019-A/20053: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9NYY3 (Reactome details) participates in the following event(s):

R-HSA-6801666 PLK2 phosphorylates CENPJ
R-HSA-6801675 PLK2 phosphorylates NPM1
R-HSA-6804115 TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain
R-HSA-6791312 TP53 Regulates Transcription of Cell Cycle Genes
R-HSA-3700989 Transcriptional Regulation by TP53
R-HSA-212436 Generic Transcription Pathway
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000274289.1, ENST00000274289.2, ENST00000274289.3, ENST00000274289.4, ENST00000274289.5, ENST00000274289.6, ENST00000274289.7, NM_006622, O60679, PLK2_HUMAN, Q96CV7, Q9NYY3, Q9UE61, SNK, uc317jen.1, uc317jen.2
UCSC ID: ENST00000274289.8_7
RefSeq Accession: NM_006622.4
Protein: Q9NYY3 (aka PLK2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.