Human Gene PMCH (ENST00000329406.5_7) from GENCODE V47lift37
  Description: pro-melanin concentrating hormone (from RefSeq NM_002674.4)
Gencode Transcript: ENST00000329406.5_7
Gencode Gene: ENSG00000183395.5_9
Transcript (Including UTRs)
   Position: hg19 chr12:102,590,237-102,591,611 Size: 1,375 Total Exon Count: 3 Strand: -
Coding Region
   Position: hg19 chr12:102,590,430-102,591,548 Size: 1,119 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:102,590,237-102,591,611)mRNA (may differ from genome)Protein (165 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MCH_HUMAN
DESCRIPTION: RecName: Full=Pro-MCH; Contains: RecName: Full=Neuropeptide-glycine-glutamic acid; Short=NGE; Short=Neuropeptide G-E; Contains: RecName: Full=Neuropeptide-glutamic acid-isoleucine; Short=NEI; Short=Neuropeptide E-I; Contains: RecName: Full=Melanin-concentrating hormone; Short=MCH; Flags: Precursor;
FUNCTION: MCH may act as a neurotransmitter or neuromodulator in a broad array of neuronal functions directed toward the regulation of goal-directed behavior, such as food intake, and general arousal. May also have a role in spermatocyte differentiation.
SUBCELLULAR LOCATION: Secreted.
TISSUE SPECIFICITY: Predominantly expressed in lateral hypothalamus, also detected in pallidum, neocortex and cerebellum. Also found in thymus, brown adipose tissue, duodenum and testis (spermatogonia, early spermatocytes and Sertoli cells). No expression in peripheral blood. In brain exclusively mature MCH and NEI peptides are present. In peripheral tissues a large product, encompassing the NEI and MCH domains of the precursor, is found predominantly.
PTM: Differentially processed in the brain and in peripheral organs producing two neuropeptides; NEI and MCH. A third peptide, NGE, may also be produced. Preferential processing in neurons by prohormone convertase 2 (PC2) generates NEI. MCH is generated in neurons of the lateral hypothalmic area by several prohormone convertases including PC1/3, PC2 and PC5/6.
SIMILARITY: Belongs to the melanin-concentrating hormone family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PMCH
Diseases sorted by gene-association score: hypersomnia (2), byssinosis (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 33.95 RPKM in Brain - Hypothalamus
Total median expression: 37.38 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -12.1063-0.192 Picture PostScript Text
3' UTR -30.80193-0.160 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR005456 - Prepro-melanin_conc_hormone

Pfam Domains:
PF05824 - Pro-melanin-concentrating hormone (Pro-MCH)

ModBase Predicted Comparative 3D Structure on P20382
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005179 hormone activity
GO:0030354 melanin-concentrating hormone activity

Biological Process:
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007218 neuropeptide signaling pathway
GO:0007268 chemical synaptic transmission
GO:0007275 multicellular organism development
GO:0007283 spermatogenesis
GO:0007631 feeding behavior
GO:0010469 regulation of receptor activity
GO:0030154 cell differentiation

Cellular Component:
GO:0005576 extracellular region
GO:0005634 nucleus


-  Descriptions from all associated GenBank mRNAs
  KJ891831 - Synthetic construct Homo sapiens clone ccsbBroadEn_01225 PMCH gene, encodes complete protein.
M57703 - Human melanin concentrating hormone (MCH) mRNA, complete cds.
BC018048 - Homo sapiens pro-melanin-concentrating hormone, mRNA (cDNA clone MGC:26374 IMAGE:4794545), complete cds.
JD087323 - Sequence 68347 from Patent EP1572962.
DQ892335 - Synthetic construct clone IMAGE:100004965; FLH185434.01X; RZPDo839B02148D pro-melanin-concentrating hormone (PMCH) gene, encodes complete protein.
DQ895540 - Synthetic construct Homo sapiens clone IMAGE:100010000; FLH185430.01L; RZPDo839B02147D pro-melanin-concentrating hormone (PMCH) gene, encodes complete protein.
JD297345 - Sequence 278369 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P20382 (Reactome details) participates in the following event(s):

R-HSA-947673 Melanin-concentrating hormone receptors bind MCH
R-HSA-749454 The Ligand:GPCR:Gi complex dissociates
R-HSA-749452 The Ligand:GPCR:Gq complex dissociates
R-HSA-749456 Liganded Gi-activating GPCRs bind inactive heterotrimeric G-protein Gi
R-HSA-749448 Liganded Gq-activating GPCRs bind inactive heterotrimeric Gq
R-HSA-380073 Liganded Gi-activating GPCR acts as a GEF for Gi
R-HSA-379048 Liganded Gq/11-activating GPCRs act as GEFs for Gq/11
R-HSA-375276 Peptide ligand-binding receptors
R-HSA-418594 G alpha (i) signalling events
R-HSA-416476 G alpha (q) signalling events
R-HSA-373076 Class A/1 (Rhodopsin-like receptors)
R-HSA-388396 GPCR downstream signalling
R-HSA-500792 GPCR ligand binding
R-HSA-372790 Signaling by GPCR
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000329406.1, ENST00000329406.2, ENST00000329406.3, ENST00000329406.4, MCH, MCH_HUMAN, NM_002674, P20382, Q16044, Q8WVG0, uc317ssr.1, uc317ssr.2
UCSC ID: ENST00000329406.5_7
RefSeq Accession: NM_002674.4
Protein: P20382 (aka MCH_HUMAN)

-  Gene Model Information
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-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.