Human Gene POM121 (ENST00000434423.5_8) from GENCODE V47lift37
  Description: POM121 transmembrane nucleoporin, transcript variant 12 (from RefSeq NM_001387693.1)
Gencode Transcript: ENST00000434423.5_8
Gencode Gene: ENSG00000196313.13_12
Transcript (Including UTRs)
   Position: hg19 chr7:72,395,633-72,418,838 Size: 23,206 Total Exon Count: 13 Strand: +
Coding Region
   Position: hg19 chr7:72,395,660-72,416,773 Size: 21,114 Coding Exon Count: 13 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:72,395,633-72,418,838)mRNA (may differ from genome)Protein (1249 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblExonPrimerGeneCardsHGNCMGI
PubMedReactomeUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: P121A_HUMAN
DESCRIPTION: RecName: Full=Nuclear envelope pore membrane protein POM 121; AltName: Full=Nuclear envelope pore membrane protein POM 121A; AltName: Full=Nucleoporin Nup121; AltName: Full=Pore membrane protein of 121 kDa;
FUNCTION: Essential component of the nuclear pore complex (NPC). The repeat-containing domain may be involved in anchoring components of the pore complex to the pore membrane. When overexpressed in cells induces the formation of cytoplasmic annulate lamellae (AL).
SUBCELLULAR LOCATION: Nucleus, nuclear pore complex. Nucleus membrane; Single-pass membrane protein. Endoplasmic reticulum membrane; Single-pass membrane protein (By similarity). Note=Stably associated with the NPC throughout interphase and the endoplasmic reticulum during metaphase (By similarity).
DOMAIN: Contains F-X-F-G repeats.
SIMILARITY: Belongs to the POM121 family.
SEQUENCE CAUTION: Sequence=BAA31593.2; Type=Erroneous initiation; Sequence=BAB14097.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 15.48 RPKM in Prostate
Total median expression: 459.10 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -11.8027-0.437 Picture PostScript Text
3' UTR -700.302065-0.339 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026054 - Nucleoporin
IPR026090 - POM121

Pfam Domains:
PF15229 - POM121 family

ModBase Predicted Comparative 3D Structure on Q96HA1
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0008139 nuclear localization sequence binding
GO:0017056 structural constituent of nuclear pore

Biological Process:
GO:0006405 RNA export from nucleus
GO:0006406 mRNA export from nucleus
GO:0006606 protein import into nucleus
GO:0015031 protein transport
GO:0016032 viral process
GO:0051028 mRNA transport

Cellular Component:
GO:0005634 nucleus
GO:0005635 nuclear envelope
GO:0005643 nuclear pore
GO:0005654 nucleoplasm
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0031965 nuclear membrane
GO:0044613 nuclear pore central transport channel
GO:0044615 nuclear pore nuclear basket


-  Descriptions from all associated GenBank mRNAs
  AB014518 - Homo sapiens KIAA0618 mRNA for KIAA0618 protein.
BC008794 - Homo sapiens POM121 membrane glycoprotein (rat), mRNA (cDNA clone MGC:3792 IMAGE:3621228), complete cds.
AK123814 - Homo sapiens cDNA FLJ41820 fis, clone NT2RI2015239.
AB289621 - Homo sapiens POM121 mRNA for nuclear pore membrane protein 121, partial cds.
AK292548 - Homo sapiens cDNA FLJ78766 complete cds, highly similar to Homo sapiens POM121 membrane glycoprotein (rat) (POM121), mRNA.
JD561626 - Sequence 542650 from Patent EP1572962.
JD321310 - Sequence 302334 from Patent EP1572962.
JD314137 - Sequence 295161 from Patent EP1572962.
CU679111 - Synthetic construct Homo sapiens gateway clone IMAGE:100017874 5' read POM121 mRNA.
KJ898108 - Synthetic construct Homo sapiens clone ccsbBroadEn_07502 POM121 gene, encodes complete protein.
AB528161 - Synthetic construct DNA, clone: pF1KA0618, Homo sapiens POM121 gene for POM121 membrane glycoprotein, without stop codon, in Flexi system.
AK022555 - Homo sapiens cDNA FLJ12493 fis, clone NT2RM2001635, moderately similar to NUCLEAR ENVELOPE PORE MEMBRANE PROTEIN POM 121.
JD380641 - Sequence 361665 from Patent EP1572962.
JD039690 - Sequence 20714 from Patent EP1572962.
JD321508 - Sequence 302532 from Patent EP1572962.
JD323445 - Sequence 304469 from Patent EP1572962.
BC001518 - Homo sapiens POM121 membrane glycoprotein (rat), mRNA (cDNA clone IMAGE:2967495), partial cds.
AL080109 - Homo sapiens mRNA; cDNA DKFZp586G1822 (from clone DKFZp586G1822); partial cds.
AL713666 - Homo sapiens mRNA; cDNA DKFZp586G1822 (from clone DKFZp586G1822).
AK001215 - Homo sapiens cDNA FLJ10353 fis, clone NT2RM2001177, highly similar to Homo sapiens mRNA; cDNA DKFZp586G1822.
JD123302 - Sequence 104326 from Patent EP1572962.
JD309353 - Sequence 290377 from Patent EP1572962.
JD360541 - Sequence 341565 from Patent EP1572962.
JD108302 - Sequence 89326 from Patent EP1572962.
JD025014 - Sequence 6038 from Patent EP1572962.
JD489650 - Sequence 470674 from Patent EP1572962.
JD031353 - Sequence 12377 from Patent EP1572962.
JD200666 - Sequence 181690 from Patent EP1572962.
JD129958 - Sequence 110982 from Patent EP1572962.
JD120312 - Sequence 101336 from Patent EP1572962.
JD499286 - Sequence 480310 from Patent EP1572962.
JD270328 - Sequence 251352 from Patent EP1572962.
JD192473 - Sequence 173497 from Patent EP1572962.
DQ581319 - Homo sapiens piRNA piR-49431, complete sequence.
JD362711 - Sequence 343735 from Patent EP1572962.
JD089622 - Sequence 70646 from Patent EP1572962.
JD341474 - Sequence 322498 from Patent EP1572962.
JD196957 - Sequence 177981 from Patent EP1572962.
JD216749 - Sequence 197773 from Patent EP1572962.
JD335568 - Sequence 316592 from Patent EP1572962.
JD272481 - Sequence 253505 from Patent EP1572962.
JD215547 - Sequence 196571 from Patent EP1572962.
JD337082 - Sequence 318106 from Patent EP1572962.
LF359866 - JP 2014500723-A/167369: Polycomb-Associated Non-Coding RNAs.
JD226011 - Sequence 207035 from Patent EP1572962.
JD542197 - Sequence 523221 from Patent EP1572962.
JD187613 - Sequence 168637 from Patent EP1572962.
JD306749 - Sequence 287773 from Patent EP1572962.
JD321448 - Sequence 302472 from Patent EP1572962.
JD361647 - Sequence 342671 from Patent EP1572962.
JD265796 - Sequence 246820 from Patent EP1572962.
MA595443 - JP 2018138019-A/167369: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q96HA1 (Reactome details) participates in the following event(s):

R-HSA-75096 Docking of the TAP:EJC Complex with the NPC
R-HSA-165043 Rev multimer-bound HIV mRNA:Crm1:Ran:GTP complex associates with the NPC
R-HSA-180622 Vpr binds nucleoporins
R-HSA-180710 Rev:importin beta:B23 recruited to the nuclear pore
R-HSA-2990882 CDK1 phosphorylates NUP98
R-HSA-75098 mRNP complex dissociates from cytosolic face of NPC
R-HSA-165047 Translocation of nuclear RNA transport complex to cytoplasm
R-HSA-180732 Translocation of Rev:importin-beta:B23 to the nucleus
R-HSA-2990880 NEK6/NEK7 phosphorylates NUP98
R-HSA-170796 NPC transports GCK1:GKRP from cytosol to nucleoplasm
R-HSA-5578744 Importin-8 imports AGO2:miRNA into the nucleus
R-HSA-6783483 tRNA:XPOT:RAN:GTP translocates from the nucleus to the cytosol
R-HSA-3000348 RANBP2 SUMOylates SP100 with SUMO2
R-HSA-3000399 RANBP2 SUMOylates SP100 with SUMO1
R-HSA-3000411 RANBP2 SUMOylates PML with SUMO2
R-HSA-4570493 RANBP2 (NUP358) SUMOylates HNRNPC with SUMO1
R-HSA-4615872 RANBP2 SUMOylates HDAC4 with SUMO1
R-HSA-4615987 RANBP2 SUMOylates HDAC4 with SUMO2,3
R-HSA-5228508 RANBP2 SUMOylates PML with SUMO1
R-HSA-5228525 RANBP2 SUMOylates TOP2A with SUMO1
R-HSA-192627 Viral mRNA Export
R-HSA-192925 Export of Spliced Viral mRNA
R-HSA-5252041 NPC transports Hikeshi:HSP70s:ATP from cytosol to nucleoplasm
R-HSA-159236 Transport of Mature mRNA derived from an Intron-Containing Transcript
R-HSA-165054 Rev-mediated nuclear export of HIV RNA
R-HSA-180910 Vpr-mediated nuclear import of PICs
R-HSA-180746 Nuclear import of Rev protein
R-HSA-3301854 Nuclear Pore Complex (NPC) Disassembly
R-HSA-72202 Transport of Mature Transcript to Cytoplasm
R-HSA-162599 Late Phase of HIV Life Cycle
R-HSA-177243 Interactions of Rev with host cellular proteins
R-HSA-176033 Interactions of Vpr with host cellular proteins
R-HSA-2980766 Nuclear Envelope Breakdown
R-HSA-170822 Regulation of Glucokinase by Glucokinase Regulatory Protein
R-HSA-168276 NS1 Mediated Effects on Host Pathways
R-HSA-1169408 ISG15 antiviral mechanism
R-HSA-5578749 Transcriptional regulation by small RNAs
R-HSA-6784531 tRNA processing in the nucleus
R-HSA-3108214 SUMOylation of DNA damage response and repair proteins
R-HSA-4570464 SUMOylation of RNA binding proteins
R-HSA-4551638 SUMOylation of chromatin organization proteins
R-HSA-4615885 SUMOylation of DNA replication proteins
R-HSA-168325 Viral Messenger RNA Synthesis
R-HSA-3371453 Regulation of HSF1-mediated heat shock response
R-HSA-72203 Processing of Capped Intron-Containing Pre-mRNA
R-HSA-162587 HIV Life Cycle
R-HSA-162909 Host Interactions of HIV factors
R-HSA-68875 Mitotic Prophase
R-HSA-70171 Glycolysis
R-HSA-168253 Host Interactions with Influenza Factors
R-HSA-1169410 Antiviral mechanism by IFN-stimulated genes
R-HSA-211000 Gene Silencing by RNA
R-HSA-72306 tRNA processing
R-HSA-3108232 SUMO E3 ligases SUMOylate target proteins
R-HSA-168273 Influenza Viral RNA Transcription and Replication
R-HSA-3371556 Cellular response to heat stress
R-HSA-8953854 Metabolism of RNA
R-HSA-162906 HIV Infection
R-HSA-68886 M Phase
R-HSA-70326 Glucose metabolism
R-HSA-168254 Influenza Infection
R-HSA-913531 Interferon Signaling
R-HSA-74160 Gene expression (Transcription)
R-HSA-2990846 SUMOylation
R-HSA-168255 Influenza Life Cycle
R-HSA-2262752 Cellular responses to stress
R-HSA-5663205 Infectious disease
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-71387 Metabolism of carbohydrates
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-597592 Post-translational protein modification
R-HSA-8953897 Cellular responses to external stimuli
R-HSA-1643685 Disease
R-HSA-1640170 Cell Cycle
R-HSA-1430728 Metabolism
R-HSA-168256 Immune System
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: A6NFS9, A8CDT4, A8K933, A8MXF9, ENST00000434423.1, ENST00000434423.2, ENST00000434423.3, ENST00000434423.4, KIAA0618, NM_001387693, NUP121, O75115, P121A_HUMAN, POM121A, Q96DI0, Q96HA1, Q9H9X1, Q9Y2N3, Q9Y4S7, uc320cxr.1, uc320cxr.2
UCSC ID: ENST00000434423.5_8
RefSeq Accession: NM_001387691.1
Protein: Q96HA1 (aka P121A_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.