Human Gene PON2 (ENST00000222572.8_7) from GENCODE V47lift37
  Description: paraoxonase 2, transcript variant 1 (from RefSeq NM_000305.3)
Gencode Transcript: ENST00000222572.8_7
Gencode Gene: ENSG00000105854.13_12
Transcript (Including UTRs)
   Position: hg19 chr7:95,034,174-95,064,340 Size: 30,167 Total Exon Count: 9 Strand: -
Coding Region
   Position: hg19 chr7:95,034,642-95,064,263 Size: 29,622 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:95,034,174-95,064,340)mRNA (may differ from genome)Protein (354 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PON2_HUMAN
DESCRIPTION: RecName: Full=Serum paraoxonase/arylesterase 2; Short=PON 2; EC=3.1.1.2; EC=3.1.1.81; AltName: Full=Aromatic esterase 2; Short=A-esterase 2; AltName: Full=Serum aryldialkylphosphatase 2;
FUNCTION: Capable of hydrolyzing lactones and a number of aromatic carboxylic acid esters. Has antioxidant activity. Is not associated with high density lipoprotein. Prevents LDL lipid peroxidation, reverses the oxidation of mildly oxidized LDL, and inhibits the ability of MM-LDL to induce monocyte chemotaxis.
CATALYTIC ACTIVITY: A phenyl acetate + H(2)O = a phenol + acetate.
CATALYTIC ACTIVITY: An N-acyl-L-homoserine lactone + H(2)O = an N- acyl-L-homoserine.
COFACTOR: Binds 2 calcium ions per subunit (By similarity).
SUBUNIT: Homotrimer.
SUBCELLULAR LOCATION: Membrane; Peripheral membrane protein.
TISSUE SPECIFICITY: Widely expressed with highest expression in liver, lung, placenta, testis and heart.
PTM: The signal sequence is not cleaved (By similarity).
SIMILARITY: Belongs to the paraoxonase family.
WEB RESOURCE: Name=SeattleSNPs; URL="http://pga.gs.washington.edu/data/pon2/";
WEB RESOURCE: Name=SHMPD; Note=The Singapore human mutation and polymorphism database; URL="http://shmpd.bii.a-star.edu.sg/gene.php?genestart=A&genename=PON2";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PON2
Diseases sorted by gene-association score: amyotrophic lateral sclerosis 1* (72), multiple chemical sensitivity (16), hypercholesterolemia, familial (5), coronary artery disease (4)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • C010643 6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid
  • D000111 Acetylcysteine
  • D002084 Butylated Hydroxytoluene
  • D006861 Hydrogen Peroxide
  • C009618 O,O-diethyl O-3,5,6-trichloro-2-pyridyl phosphate
  • D014810 Vitamin E
  • C051140 iron(II)-ascorbic acid complex
  • D020122 tert-Butylhydroperoxide
  • C063002 2,3-dimethoxy-1,4-naphthoquinone
  • C016403 2,4-dinitrotoluene
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 90.24 RPKM in Brain - Caudate (basal ganglia)
Total median expression: 1557.22 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -33.4077-0.434 Picture PostScript Text
3' UTR -95.20468-0.203 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011042 - 6-blade_b-propeller_TolB-like
IPR002640 - Arylesterase
IPR008364 - Paraoxonase2

Pfam Domains:
PF01731 - Arylesterase
PF08450 - SMP-30/Gluconolactonase/LRE-like region

SCOP Domains:
50952 - Soluble quinoprotein glucose dehydrogenase
50956 - Thermostable phytase (3-phytase)
50960 - TolB, C-terminal domain
63825 - YWTD domain
63829 - Calcium-dependent phosphotriesterase
69304 - Tricorn protease N-terminal domain
101898 - NHL repeat
75011 - 3-carboxy-cis,cis-mucoante lactonizing enzyme
101908 - Putative isomerase YbhE
50969 - YVTN repeat-like/Quinoprotein amine dehydrogenase
50974 - Nitrous oxide reductase, N-terminal domain
50978 - WD40 repeat-like
50993 - Peptidase/esterase 'gauge' domain
69322 - Tricorn protease domain 2
50998 - Quinoprotein alcohol dehydrogenase-like
51004 - C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
82171 - DPP6 N-terminal domain-like

ModBase Predicted Comparative 3D Structure on Q15165
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004064 arylesterase activity
GO:0016787 hydrolase activity
GO:0042802 identical protein binding
GO:0046872 metal ion binding
GO:0102007 acyl-L-homoserine-lactone lactonohydrolase activity

Biological Process:
GO:0006979 response to oxidative stress
GO:0009636 response to toxic substance
GO:0019372 lipoxygenase pathway
GO:0019439 aromatic compound catabolic process

Cellular Component:
GO:0005576 extracellular region
GO:0005634 nucleus
GO:0005739 mitochondrion
GO:0005764 lysosome
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0043231 intracellular membrane-bounded organelle


-  Descriptions from all associated GenBank mRNAs
  AF001601 - Homo sapiens paraoxonase (PON2) mRNA, complete cds.
BC093006 - Homo sapiens cDNA clone IMAGE:30339331, containing frame-shift errors.
AK054688 - Homo sapiens cDNA FLJ30126 fis, clone BRACE1000114.
AK301313 - Homo sapiens cDNA FLJ55597 complete cds, highly similar to Serum paraoxonase/arylesterase 2 (EC 3.1.1.2).
BC046160 - Homo sapiens paraoxonase 2, mRNA (cDNA clone MGC:57708 IMAGE:5393700), complete cds.
L48513 - Homo sapiens paraoxonase 2 (PON2) mRNA, complete cds.
AK308065 - Homo sapiens cDNA, FLJ98013.
AK291103 - Homo sapiens cDNA FLJ78444 complete cds, highly similar to Homo sapiens paraoxonase 2, transcript variant 1, mRNA.
AK296029 - Homo sapiens cDNA FLJ55376 complete cds, highly similar to Serum paraoxonase/arylesterase 2 (EC 3.1.1.2).
JD565141 - Sequence 546165 from Patent EP1572962.
JD094015 - Sequence 75039 from Patent EP1572962.
BC040010 - Homo sapiens paraoxonase 2, mRNA (cDNA clone MGC:48867 IMAGE:6056277), complete cds.
AK296636 - Homo sapiens cDNA FLJ54305 complete cds, highly similar to Serum paraoxonase/arylesterase 2 (EC 3.1.1.2).
JD469686 - Sequence 450710 from Patent EP1572962.
AB102891 - Homo sapiens mRNA for paraoxonase nirs variant 1, complete cds.
AK315209 - Homo sapiens cDNA, FLJ96200, highly similar to Homo sapiens paraoxonase 2 (PON2), mRNA.
AB591009 - Synthetic construct DNA, clone: pFN21AE1838, Homo sapiens PON2 gene for paraoxonase 2, without stop codon, in Flexi system.
AF001602 - Homo sapiens paraoxonase (PON2) mRNA, with alternatively spliced exon 3, complete cds.
JD021320 - Sequence 2344 from Patent EP1572962.
KJ901651 - Synthetic construct Homo sapiens clone ccsbBroadEn_11045 PON2 gene, encodes complete protein.
CU692318 - Synthetic construct Homo sapiens gateway clone IMAGE:100021283 5' read PON2 mRNA.
BC009728 - Homo sapiens paraoxonase 2, mRNA (cDNA clone IMAGE:3901231), partial cds.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q15165 (Reactome details) participates in the following event(s):

R-HSA-8932633 PON1,2,3:Ca2+ dimers hydrolyse 5-HETEL to 5-HETE
R-HSA-2142688 Synthesis of 5-eicosatetraenoic acids
R-HSA-2142753 Arachidonic acid metabolism
R-HSA-8978868 Fatty acid metabolism
R-HSA-556833 Metabolism of lipids
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: A4D1H7, B2RCP9, B4DJD5, ENST00000222572.1, ENST00000222572.2, ENST00000222572.3, ENST00000222572.4, ENST00000222572.5, ENST00000222572.6, ENST00000222572.7, NM_000305, O15114, O15115, O75856, PON2_HUMAN, Q15165, Q5FBX7, Q86YL0, uc317dfe.1, uc317dfe.2
UCSC ID: ENST00000222572.8_7
RefSeq Accession: NM_000305.3
Protein: Q15165 (aka PON2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.