Human Gene PPP1R9B (ENST00000612501.2_7) from GENCODE V47lift37
  Description: protein phosphatase 1 regulatory subunit 9B (from RefSeq NM_032595.5)
Gencode Transcript: ENST00000612501.2_7
Gencode Gene: ENSG00000108819.11_9
Transcript (Including UTRs)
   Position: hg19 chr17:48,211,101-48,228,038 Size: 16,938 Total Exon Count: 12 Strand: -
Coding Region
   Position: hg19 chr17:48,212,696-48,227,874 Size: 15,179 Coding Exon Count: 12 

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Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:48,211,101-48,228,038)mRNA (may differ from genome)Protein (815 aa)
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-  Comments and Description Text from UniProtKB
  ID: NEB2_HUMAN
DESCRIPTION: RecName: Full=Neurabin-2; AltName: Full=Neurabin-II; AltName: Full=Protein phosphatase 1 regulatory subunit 9B; AltName: Full=Spinophilin;
FUNCTION: Seems to act as a scaffold protein in multiple signaling pathways. Modulates excitatory synaptic transmission and dendritic spine morphology. Binds to actin filaments (F-actin) and shows cross-linking activity. Binds along the sides of the F-actin. May play an important role in linking the actin cytoskeleton to the plasma membrane at the synaptic junction. Believed to target protein phosphatase 1/PP1 to dendritic spines, which are rich in F-actin, and regulates its specificity toward ion channels and other substrates, such as AMPA-type and NMDA-type glutamate receptors. Plays a role in regulation of G-protein coupled receptor signaling, including dopamine D2 receptors and alpha- adrenergic receptors. May establish a signaling complex for dopaminergic neurotransmission through D2 receptors by linking receptors downstream signaling molecules and the actin cytoskeleton. Binds to ADRA1B and RGS2 and mediates regulation of ADRA1B signaling. May confer to Rac signaling specificity by binding to both, RacGEFs and Rac effector proteins. Probably regulates p70 S6 kinase activity by forming a complex with TIAM1 (By similarity). Required for hepatocyte growth factor (HGF)- induced cell migration.
SUBUNIT: Interacts with DCLK2 (By similarity). Possibly exists as a homodimer, homotrimer or a homotetramer. Interacts with F-actin, PPP1CA, neurabin-1, TGN38 and D(2) dopamine receptor. Interacts with RGS1, RGS2, RGS4, RGS19 and ADRA1B, ADRA2A, ADRA2B, ADRA2C, CDKN2A, PPP1R2, RASGFR1 and TIAM1. Interacts (via C-terminus) with SPATA13 (via C-terminal tail).
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton (By similarity). Nucleus (By similarity). Cell projection, dendritic spine (By similarity). Cell junction, synapse. Cell junction, adherens junction (By similarity). Cytoplasm. Cell membrane. Cell projection, lamellipodium. Cell projection, filopodium. Cell projection, ruffle membrane. Note=Enriched at synapse and cadherin-based cell-cell adhesion sites. In neurons, both cytosolic and membrane-associated, and highly enriched in the postsynaptic density apposed to exitatory synapses. Colocalizes with PPP1R2 at actin-rich adherens junctions in epithelial cells and in dendritic spines (By similarity). Accumulates in the lamellipodium, filopodium and ruffle membrane in response to hepatocyte growth factor (HGF) treatment.
DOMAIN: The PP1 binding region is natively unstructured, upon PP1 binding, it acquires structure, blocks a substrate-binding site, and restricts PP1 phosphatase specificity to a subset of substrates (By similarity).
PTM: Stimulation of D1 (but not D2) dopamine receptors induces Ser-94 phosphorylation. Dephosphorylation of Ser-94 is mediated mainly by PP1 and to a lesser extent by PP2A. Phosphorylation of spinophilin disrupts its association with F-actin, but does not affect its binding to PP1 (By similarity).
SIMILARITY: Contains 1 PDZ (DHR) domain.

-  Primer design for this transcript
 

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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PPP1R9B
Diseases sorted by gene-association score: limbic encephalitis (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -69.90164-0.426 Picture PostScript Text
3' UTR -636.801595-0.399 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001478 - PDZ

Pfam Domains:
PF00595 - PDZ domain
PF17817 - PDZ domain

SCOP Domains:
50156 - PDZ domain-like
90257 - Myosin rod fragments
57997 - Tropomyosin

ModBase Predicted Comparative 3D Structure on Q96SB3
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003779 actin binding
GO:0004864 protein phosphatase inhibitor activity
GO:0005515 protein binding
GO:0008157 protein phosphatase 1 binding

Biological Process:
GO:0001560 regulation of cell growth by extracellular stimulus
GO:0007050 cell cycle arrest
GO:0007096 regulation of exit from mitosis
GO:0007275 multicellular organism development
GO:0007399 nervous system development
GO:0008380 RNA splicing
GO:0016477 cell migration
GO:0030154 cell differentiation
GO:0030308 negative regulation of cell growth
GO:0032515 negative regulation of phosphoprotein phosphatase activity
GO:0042127 regulation of cell proliferation
GO:0046847 filopodium assembly
GO:0050804 modulation of synaptic transmission
GO:0071315 cellular response to morphine
GO:2000474 regulation of opioid receptor signaling pathway

Cellular Component:
GO:0000164 protein phosphatase type 1 complex
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005856 cytoskeleton
GO:0005886 plasma membrane
GO:0005912 adherens junction
GO:0016020 membrane
GO:0030027 lamellipodium
GO:0030054 cell junction
GO:0030175 filopodium
GO:0032587 ruffle membrane
GO:0042995 cell projection
GO:0043197 dendritic spine
GO:0045202 synapse


-  Descriptions from all associated GenBank mRNAs
  BC016162 - Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit 9B, mRNA (cDNA clone IMAGE:3346917), partial cds.
BC011232 - Homo sapiens protein phosphatase 1, regulatory subunit 9B, spinophilin, mRNA (cDNA clone IMAGE:4153224).
BC008564 - Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit 9B, mRNA (cDNA clone IMAGE:4178802), partial cds.
AL157449 - Homo sapiens mRNA; cDNA DKFZp761E0711 (from clone DKFZp761E0711).
AK054907 - Homo sapiens cDNA FLJ30345 fis, clone BRACE2007522, highly similar to Neurabin-2.
AL713642 - Homo sapiens mRNA; cDNA DKFZp761F1022 (from clone DKFZp761F1022).
AJ401189 - Homo sapiens mRNA for neurabin II protein.

-  Other Names for This Gene
  Alternate Gene Symbols: D3DTX6, ENST00000612501.1, NEB2_HUMAN, NM_032595, PPP1R6, Q8TCR9, Q96SB3, uc327oav.1, uc327oav.2
UCSC ID: ENST00000612501.2_7
RefSeq Accession: NM_032595.5
Protein: Q96SB3 (aka NEB2_HUMAN)

-  Gene Model Information
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-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.