Human Gene PRC1 (ENST00000394249.8_11) from GENCODE V47lift37
  Description: protein regulator of cytokinesis 1, transcript variant 1 (from RefSeq NM_003981.4)
Gencode Transcript: ENST00000394249.8_11
Gencode Gene: ENSG00000198901.14_16
Transcript (Including UTRs)
   Position: hg19 chr15:91,509,270-91,537,765 Size: 28,496 Total Exon Count: 15 Strand: -
Coding Region
   Position: hg19 chr15:91,510,361-91,537,647 Size: 27,287 Coding Exon Count: 15 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:91,509,270-91,537,765)mRNA (may differ from genome)Protein (620 aa)
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-  Comments and Description Text from UniProtKB
  ID: PRC1_HUMAN
DESCRIPTION: RecName: Full=Protein regulator of cytokinesis 1;
FUNCTION: Key regulator of cytokinesis that cross-links antiparrallel microtubules at an average distance of 35 nM. Essential for controlling the spatiotemporal formation of the midzone and successful cytokinesis. Required for KIF14 localization to the central spindle and midbody. Required to recruit PLK1 to the spindle. Stimulates PLK1 phosphorylation of RACGAP1 to allow recruitment of ECT2 to the central spindle.
SUBUNIT: Homodimer. Interacts with the C-terminal Rho-GAP domain and the basic region of RACGAP1. The interaction with RACGAP1 inhibits its GAP activity towards CDC42 in vitro, which may be required for maintaining normal spindle morphology. Interacts separately via its N-terminal region with the C-terminus of CENPE, KIF4A and KIF23 during late mitosis. Interacts with KIF14 and KIF20A. Interacts with PLK1.
INTERACTION: O94972:TRIM37; NbExp=3; IntAct=EBI-741137, EBI-741602;
SUBCELLULAR LOCATION: Nucleus. Cytoplasm. Cytoplasm, cytoskeleton, spindle pole. Note=Predominantly localized to the nucleus of interphase cells. During mitosis becomes associated with the mitotic spindle poles and localizes with the cell midbody during cytokinesis.
DOMAIN: Microtubule binding occurs via a basic patch in the central spectrin-like domain and requires also the unstructured C- terminal domain.
PTM: Phosphorylation by CDK1 in early mitosis holds PRC1 in an inactive monomeric state, during the metaphase to anaphase transition, PRC1 is dephosphorylated, promoting interaction with KIF4A, which then translocates PRC1 along mitotic spindles to the plus ends of antiparallel interdigitating microtubules. Dephosphorylation also promotes MT-bundling activity by allowing dimerization. Phosphorylation by CDK1 prevents PLK1-binding: upon degradation of CDK1 at anaphase and dephosphorylation, it is then phosphorylated by PLK1, leading to cytokinesis.
SIMILARITY: Belongs to the MAP65/ASE1 family.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 26.98 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 165.96 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -51.40118-0.436 Picture PostScript Text
3' UTR -293.301091-0.269 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007145 - MAP65_Ase1_PRC1

Pfam Domains:
PF03999 - Microtubule associated protein (MAP65/ASE1 family)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3NRX - X-ray MuPIT 3NRY - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on O43663
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0008017 microtubule binding
GO:0019894 kinesin binding
GO:0019901 protein kinase binding
GO:0042802 identical protein binding

Biological Process:
GO:0000022 mitotic spindle elongation
GO:0000226 microtubule cytoskeleton organization
GO:0000910 cytokinesis
GO:0001578 microtubule bundle formation
GO:0007049 cell cycle
GO:0008284 positive regulation of cell proliferation
GO:0032465 regulation of cytokinesis
GO:0051301 cell division

Cellular Component:
GO:0000922 spindle pole
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005819 spindle
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005874 microtubule
GO:0005876 spindle microtubule
GO:0030496 midbody
GO:0070938 contractile ring


-  Descriptions from all associated GenBank mRNAs
  BX647317 - Homo sapiens mRNA; cDNA DKFZp686F06275 (from clone DKFZp686F06275).
AF044588 - Homo sapiens protein regulating cytokinesis 1 (PRC1) mRNA, complete cds.
BC003138 - Homo sapiens protein regulator of cytokinesis 1, mRNA (cDNA clone MGC:3669 IMAGE:2958690), complete cds.
BC005140 - Homo sapiens protein regulator of cytokinesis 1, mRNA (cDNA clone MGC:1671 IMAGE:3504761), complete cds.
JD547504 - Sequence 528528 from Patent EP1572962.
JD131954 - Sequence 112978 from Patent EP1572962.
JD493943 - Sequence 474967 from Patent EP1572962.
JD245134 - Sequence 226158 from Patent EP1572962.
JD344465 - Sequence 325489 from Patent EP1572962.
JD561042 - Sequence 542066 from Patent EP1572962.
JD188082 - Sequence 169106 from Patent EP1572962.
JD221388 - Sequence 202412 from Patent EP1572962.
JD066264 - Sequence 47288 from Patent EP1572962.
JD372667 - Sequence 353691 from Patent EP1572962.
JD153769 - Sequence 134793 from Patent EP1572962.
JD245905 - Sequence 226929 from Patent EP1572962.
AK297117 - Homo sapiens cDNA FLJ55720 complete cds, highly similar to Protein regulator of cytokinesis 1.
JD081100 - Sequence 62124 from Patent EP1572962.
JD038258 - Sequence 19282 from Patent EP1572962.
JD375034 - Sequence 356058 from Patent EP1572962.
JD346134 - Sequence 327158 from Patent EP1572962.
JD512289 - Sequence 493313 from Patent EP1572962.
AK312600 - Homo sapiens cDNA, FLJ92976.
KJ897956 - Synthetic construct Homo sapiens clone ccsbBroadEn_07350 PRC1 gene, encodes complete protein.
KJ901936 - Synthetic construct Homo sapiens clone ccsbBroadEn_11330 PRC1 gene, encodes complete protein.
DQ892933 - Synthetic construct clone IMAGE:100005563; FLH190965.01X; RZPDo839F1176D protein regulator of cytokinesis 1 (PRC1) gene, encodes complete protein.
DQ896182 - Synthetic construct Homo sapiens clone IMAGE:100010642; FLH190961.01L; RZPDo839F1166D protein regulator of cytokinesis 1 (PRC1) gene, encodes complete protein.
CU675013 - Synthetic construct Homo sapiens gateway clone IMAGE:100017712 5' read PRC1 mRNA.
AK304094 - Homo sapiens cDNA FLJ59606 complete cds, highly similar to Protein regulator of cytokinesis 1.
JD024691 - Sequence 5715 from Patent EP1572962.
JD033591 - Sequence 14615 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O43663 (Reactome details) participates in the following event(s):

R-HSA-5671970 Activated CIT binds KIF14 and PRC1
R-HSA-5625900 RHO GTPases activate CIT
R-HSA-195258 RHO GTPase Effectors
R-HSA-194315 Signaling by Rho GTPases
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: A6NC44, B4DLR1, ENST00000394249.1, ENST00000394249.2, ENST00000394249.3, ENST00000394249.4, ENST00000394249.5, ENST00000394249.6, ENST00000394249.7, H9KV59, NM_003981, O43663, PRC1 , PRC1_HUMAN, Q9BSB6, uc318wmw.1, uc318wmw.2
UCSC ID: ENST00000394249.8_11
RefSeq Accession: NM_003981.4
Protein: O43663 (aka PRC1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.