Human Gene PRDX3 (ENST00000298510.4_7) from GENCODE V47lift37
  Description: peroxiredoxin 3, transcript variant 6 (from RefSeq NR_126105.2)
Gencode Transcript: ENST00000298510.4_7
Gencode Gene: ENSG00000165672.7_9
Transcript (Including UTRs)
   Position: hg19 chr10:120,927,232-120,938,324 Size: 11,093 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr10:120,927,992-120,938,302 Size: 10,311 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:120,927,232-120,938,324)mRNA (may differ from genome)Protein (256 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PRDX3_HUMAN
DESCRIPTION: RecName: Full=Thioredoxin-dependent peroxide reductase, mitochondrial; EC=1.11.1.15; AltName: Full=Antioxidant protein 1; Short=AOP-1; AltName: Full=HBC189; AltName: Full=Peroxiredoxin III; Short=Prx-III; AltName: Full=Peroxiredoxin-3; AltName: Full=Protein MER5 homolog; Flags: Precursor;
FUNCTION: Involved in redox regulation of the cell. Protects radical-sensitive enzymes from oxidative damage by a radical- generating system. Acts synergistically with MAP3K13 to regulate the activation of NF-kappa-B in the cytosol.
CATALYTIC ACTIVITY: 2 R'-SH + ROOH = R'-S-S-R' + H(2)O + ROH.
SUBUNIT: Dodecameric ring assembled from homodimeric units; disulfide-linked, upon oxidation. The rings have an approximate diameter of 150 A and a central hole of 70 A. 3-5% of the rings are interlocked by pairs. Binds MAP3K13. Interacts with NEK6. Interacts with LRRK2.
SUBCELLULAR LOCATION: Mitochondrion.
PTM: Phosphorylated by LRRK2; phosphorylation reduces perodixase activity.
MISCELLANEOUS: The active site is the redox-active Cys-108 oxidized to Cys-SOH. Cys-SOH rapidly reacts with Cys-229-SH of the other subunit to form an intermolecular disulfide with a concomitant homodimer formation. The enzyme may be subsequently regenerated by reduction of the disulfide by thioredoxin.
MISCELLANEOUS: Irreversibly inactivated by overoxidation of Cys- 108 (to Cys-SO(3)H) upon oxidative stress.
SIMILARITY: Belongs to the AhpC/TSA family.
SIMILARITY: Contains 1 thioredoxin domain.
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/prdx3/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PRDX3
Diseases sorted by gene-association score: fuchs' endothelial dystrophy (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 132.29 RPKM in Adrenal Gland
Total median expression: 1741.51 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -4.4022-0.200 Picture PostScript Text
3' UTR -150.90760-0.199 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000866 - AhpC/TSA
IPR024706 - Peroxiredoxin_AhpC-typ
IPR019479 - Peroxiredoxin_C
IPR012336 - Thioredoxin-like_fold

Pfam Domains:
PF00578 - AhpC/TSA family
PF08534 - Redoxin
PF10417 - C-terminal domain of 1-Cys peroxiredoxin

SCOP Domains:
52833 - Thioredoxin-like

ModBase Predicted Comparative 3D Structure on P30048
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004601 peroxidase activity
GO:0005515 protein binding
GO:0008022 protein C-terminus binding
GO:0008379 thioredoxin peroxidase activity
GO:0008785 alkyl hydroperoxide reductase activity
GO:0016209 antioxidant activity
GO:0016491 oxidoreductase activity
GO:0019900 kinase binding
GO:0019901 protein kinase binding
GO:0042802 identical protein binding
GO:0043027 cysteine-type endopeptidase inhibitor activity involved in apoptotic process
GO:0051920 peroxiredoxin activity

Biological Process:
GO:0001893 maternal placenta development
GO:0006915 apoptotic process
GO:0006979 response to oxidative stress
GO:0007005 mitochondrion organization
GO:0008284 positive regulation of cell proliferation
GO:0018171 peptidyl-cysteine oxidation
GO:0030099 myeloid cell differentiation
GO:0032496 response to lipopolysaccharide
GO:0033673 negative regulation of kinase activity
GO:0034599 cellular response to oxidative stress
GO:0034614 cellular response to reactive oxygen species
GO:0042542 response to hydrogen peroxide
GO:0042744 hydrogen peroxide catabolic process
GO:0043066 negative regulation of apoptotic process
GO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0045454 cell redox homeostasis
GO:0051092 positive regulation of NF-kappaB transcription factor activity
GO:0051881 regulation of mitochondrial membrane potential
GO:0055114 oxidation-reduction process
GO:0098869 cellular oxidant detoxification

Cellular Component:
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005759 mitochondrial matrix
GO:0005768 endosome
GO:0005769 early endosome
GO:0005829 cytosol
GO:0032991 macromolecular complex
GO:0043209 myelin sheath
GO:0008385 IkappaB kinase complex


-  Descriptions from all associated GenBank mRNAs
  BC022373 - Homo sapiens peroxiredoxin 3, mRNA (cDNA clone MGC:23923 IMAGE:4775243), complete cds.
BC059169 - Homo sapiens peroxiredoxin 3, mRNA (cDNA clone MGC:14578 IMAGE:4133576), complete cds.
BC021691 - Homo sapiens peroxiredoxin 3, mRNA (cDNA clone MGC:24293 IMAGE:3961379), complete cds.
BC007062 - Homo sapiens peroxiredoxin 3, mRNA (cDNA clone MGC:12511 IMAGE:3960644), complete cds.
BC008038 - Homo sapiens cDNA clone IMAGE:2988633, **** WARNING: chimeric clone ****.
BC002685 - Homo sapiens peroxiredoxin 3, mRNA (cDNA clone MGC:3522 IMAGE:3607558), complete cds.
GQ891458 - Homo sapiens clone HEL-S-179 epididymis secretory sperm binding protein mRNA, complete cds.
BC008435 - Homo sapiens peroxiredoxin 3, mRNA (cDNA clone MGC:14634 IMAGE:4081846), complete cds.
BC111397 - Homo sapiens peroxiredoxin 3, mRNA (cDNA clone MGC:104387 IMAGE:4246143), complete cds.
AK130897 - Homo sapiens cDNA FLJ27387 fis, clone UBA09535, highly similar to Mitochondrial thioredoxin-dependent peroxide reductase precursor.
BC009601 - Homo sapiens peroxiredoxin 3, mRNA (cDNA clone MGC:14693 IMAGE:4134666), complete cds.
BD174088 - WO 2002064169-A/1: Method of treating disease in association with decrease in the expression of AOP-1 gene or AOP-1 and remedies for the disease.
D49396 - Homo sapiens Aop1 mRNA for antioxidant protein 1, complete cds.
JD566170 - Sequence 547194 from Patent EP1572962.
X85129 - H.sapiens mRNA for humer.
JD409485 - Sequence 390509 from Patent EP1572962.
AK222659 - Homo sapiens mRNA for peroxiredoxin 3 isoform a precursor variant, clone: CBL07612.
JD291422 - Sequence 272446 from Patent EP1572962.
JD298740 - Sequence 279764 from Patent EP1572962.
JD295060 - Sequence 276084 from Patent EP1572962.
JD499389 - Sequence 480413 from Patent EP1572962.
JD061758 - Sequence 42782 from Patent EP1572962.
JD232268 - Sequence 213292 from Patent EP1572962.
JD084770 - Sequence 65794 from Patent EP1572962.
BT020007 - Homo sapiens peroxiredoxin 3 mRNA, complete cds.
AK313169 - Homo sapiens cDNA, FLJ93665, Homo sapiens peroxiredoxin 3 (PRDX3), nuclear gene encoding mitochondrial protein, mRNA.
KJ898311 - Synthetic construct Homo sapiens clone ccsbBroadEn_07705 PRDX3 gene, encodes complete protein.
KJ898312 - Synthetic construct Homo sapiens clone ccsbBroadEn_07706 PRDX3 gene, encodes complete protein.
KJ898313 - Synthetic construct Homo sapiens clone ccsbBroadEn_07707 PRDX3 gene, encodes complete protein.
AB527495 - Synthetic construct DNA, clone: pF1KB7955, Homo sapiens PRDX3 gene for peroxiredoxin 3, without stop codon, in Flexi system.
CR450344 - Homo sapiens full open reading frame cDNA clone RZPDo834F012D for gene PRDX3, peroxiredoxin 3; complete cds; without stopcodon.
CU678120 - Synthetic construct Homo sapiens gateway clone IMAGE:100018625 5' read PRDX3 mRNA.
AF118073 - Homo sapiens PRO1748 mRNA, complete cds.
FW340044 - Screening.
EF036492 - Homo sapiens peroxiredoxin 3 isoform a precursor, mRNA, partial cds.
JD025003 - Sequence 6027 from Patent EP1572962.
JD028104 - Sequence 9128 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P30048 (Reactome details) participates in the following event(s):

R-HSA-3322995 PRDX3,5 catalyze TXN2 reduced + H2O2 => TXN2 oxidized + 2H2O
R-HSA-3299685 Detoxification of Reactive Oxygen Species
R-HSA-2262752 Cellular responses to stress
R-HSA-8953897 Cellular responses to external stimuli

-  Other Names for This Gene
  Alternate Gene Symbols: AOP1, B2R7Z0, D3DRC9, E9PH29, ENST00000298510.1, ENST00000298510.2, ENST00000298510.3, NR_126105, P30048, P35690, PRDX3_HUMAN, Q0D2H1, Q13776, Q5T5V2, Q96HK4, uc317mes.1, uc317mes.2
UCSC ID: ENST00000298510.4_7
RefSeq Accession: NM_006793.5
Protein: P30048 (aka PRDX3_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.