Human Gene PRG2 (ENST00000311862.10_8) from GENCODE V47lift37
  Description: proteoglycan 2, pro eosinophil major basic protein, transcript variant 1 (from RefSeq NM_002728.6)
Gencode Transcript: ENST00000311862.10_8
Gencode Gene: ENSG00000186652.10_11
Transcript (Including UTRs)
   Position: hg19 chr11:57,154,253-57,158,123 Size: 3,871 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg19 chr11:57,154,948-57,157,417 Size: 2,470 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:57,154,253-57,158,123)mRNA (may differ from genome)Protein (222 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PRG2_HUMAN
DESCRIPTION: RecName: Full=Bone marrow proteoglycan; Short=BMPG; AltName: Full=Proteoglycan 2; Contains: RecName: Full=Eosinophil granule major basic protein; Short=EMBP; Short=MBP; AltName: Full=Pregnancy-associated major basic protein; Flags: Precursor;
FUNCTION: Cytotoxin and helminthotoxin. Also induces non-cytolytic histamine release from human basophils. Involved in antiparasitic defense mechanisms and immune hypersensitivity reactions. The proform acts as a proteinase inhibitor, reducing the activity of PAPPA.
SUBUNIT: In pregnancy serum, the proform exists as a disulfide- linked 2:2 heterotetramer with PAPPA, as a disulfide-linked 2:2 heterotetramer with AGT, and as a complex (probably a 2:2:2 heterohexamer) with AGT and C3dg.
SUBCELLULAR LOCATION: Bone marrow proteoglycan: Secreted. Note=The proform is secreted.
SUBCELLULAR LOCATION: Eosinophil granule major basic protein: Cytoplasmic vesicle, secretory vesicle. Note=The proform is secreted. The mature protein is found in the matrix of the eosinophil's large specific granule (crystalloid core).
TISSUE SPECIFICITY: High levels of the proform in placenta and pregnancy serum; in placenta, localized to X cells of septa and anchoring villi. Lower levels in a variety of other tissues including kidney, myometrium, endometrium, ovaries, breast, prostate, bone marrow and colon.
DEVELOPMENTAL STAGE: Levels of the proform increase in serum and placenta during pregnancy.
PTM: Nitrated.
MISCELLANEOUS: Binds heparin. Does not bind calcium.
SIMILARITY: Contains 1 C-type lectin domain.
WEB RESOURCE: Name=Wikipedia; Note=Major basic protein entry; URL="http://en.wikipedia.org/wiki/Major_basic_protein";
WEB RESOURCE: Name=Functional Glycomics Gateway - Glycan Binding; Note=Eosinophil major basic protein; URL="http://www.functionalglycomics.org/glycomics/GBPServlet?&operationType=view&cbpId=cbp_hum_Ctlect_207";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PRG2
Diseases sorted by gene-association score: hypereosinophilic syndrome (6), eosinophilic colitis (5), asthma (3), atopic keratoconjunctivitis (2), vitreous syneresis (2), herpes gestationis (2), muscle disorders (2), ocular cicatricial pemphigoid (2), brugada syndrome (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 2.52 RPKM in Spleen
Total median expression: 22.46 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -22.3067-0.333 Picture PostScript Text
3' UTR -207.67695-0.299 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001304 - C-type_lectin
IPR016186 - C-type_lectin-like
IPR018378 - C-type_lectin_CS
IPR016187 - C-type_lectin_fold
IPR002352 - Eosinophil_major_basic

Pfam Domains:
PF00059 - Lectin C-type domain

SCOP Domains:
63748 - Tudor/PWWP/MBT
56436 - C-type lectin-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1H8U - X-ray 2BRS - X-ray


ModBase Predicted Comparative 3D Structure on P13727
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0008201 heparin binding
GO:0030246 carbohydrate binding

Biological Process:
GO:0002215 defense response to nematode
GO:0002376 immune system process
GO:0006955 immune response
GO:0032693 negative regulation of interleukin-10 production
GO:0032753 positive regulation of interleukin-4 production
GO:0042035 regulation of cytokine biosynthetic process
GO:0042742 defense response to bacterium
GO:0043312 neutrophil degranulation

Cellular Component:
GO:0005576 extracellular region
GO:0030133 transport vesicle
GO:0031410 cytoplasmic vesicle
GO:0070062 extracellular exosome
GO:1904813 ficolin-1-rich granule lumen


-  Descriptions from all associated GenBank mRNAs
  X14088 - Humon mRNA for eosinophil major basic protein precursor.
BC005929 - Homo sapiens proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein), mRNA (cDNA clone MGC:14537 IMAGE:4043815), complete cds.
M36805 - Human eosinophil granule major basic protein mRNA, complete cds.
Y00809 - Human mRNA for eosinophil granule major basic protein (MBP).
E02603 - DNA encoding natural killer cell activating factor(NKAF).
X65787 - H.sapiens mRNA for bone-marrow proteoglycan (BMPG).
Z26248 - H.sapiens mRNA for eosinophil granule major basic protein.
M35670 - Human eosinophil major basic protein mRNA, complete cds.
JD431589 - Sequence 412613 from Patent EP1572962.
JD460207 - Sequence 441231 from Patent EP1572962.
DQ846874 - Homo sapiens clone BFC06133 proteoglycan 2 preproprotein mRNA, complete cds.
AK312195 - Homo sapiens cDNA, FLJ92482, highly similar to Homo sapiens proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein) (PRG2), mRNA.
CU675193 - Synthetic construct Homo sapiens gateway clone IMAGE:100016803 5' read PRG2 mRNA.
KJ897373 - Synthetic construct Homo sapiens clone ccsbBroadEn_06767 PRG2 gene, encodes complete protein.
DQ893180 - Synthetic construct clone IMAGE:100005810; FLH194715.01X; RZPDo839E0480D proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein) (PRG2) gene, encodes complete protein.
DQ896482 - Synthetic construct Homo sapiens clone IMAGE:100010942; FLH194711.01L; RZPDo839E0470D proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein) (PRG2) gene, encodes complete protein.
AB590516 - Synthetic construct DNA, clone: pFN21AB6995, Homo sapiens PRG2 gene for proteoglycan 2, bone marrow, without stop codon, in Flexi system.
CR450311 - Homo sapiens full open reading frame cDNA clone RZPDo834F041D for gene PRG2, proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein); complete cds; without stopcodon.
JD334184 - Sequence 315208 from Patent EP1572962.
JD410265 - Sequence 391289 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P13727 (Reactome details) participates in the following event(s):

R-HSA-6800434 Exocytosis of ficolin-rich granule lumen proteins
R-HSA-6798695 Neutrophil degranulation
R-HSA-168249 Innate Immune System
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: A6XMW0, B2R5I1, ENST00000311862.1, ENST00000311862.2, ENST00000311862.3, ENST00000311862.4, ENST00000311862.5, ENST00000311862.6, ENST00000311862.7, ENST00000311862.8, ENST00000311862.9, MBP, NM_002728, P13727, P81448, PRG2_HUMAN, Q14227, Q6ICT2, uc317pcb.1, uc317pcb.2
UCSC ID: ENST00000311862.10_8
RefSeq Accession: NM_002728.6
Protein: P13727 (aka PRG2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.