Human Gene PRKAG1 (ENST00000548065.7_9) from GENCODE V47lift37
  Description: protein kinase AMP-activated non-catalytic subunit gamma 1, transcript variant 1 (from RefSeq NM_002733.5)
Gencode Transcript: ENST00000548065.7_9
Gencode Gene: ENSG00000181929.13_21
Transcript (Including UTRs)
   Position: hg19 chr12:49,396,057-49,412,559 Size: 16,503 Total Exon Count: 12 Strand: -
Coding Region
   Position: hg19 chr12:49,396,682-49,412,523 Size: 15,842 Coding Exon Count: 12 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:49,396,057-49,412,559)mRNA (may differ from genome)Protein (331 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: AAKG1_HUMAN
DESCRIPTION: RecName: Full=5'-AMP-activated protein kinase subunit gamma-1; Short=AMPK gamma1; Short=AMPK subunit gamma-1; Short=AMPKg;
FUNCTION: AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.
SUBUNIT: AMPK is a heterotrimer of an alpha catalytic subunit (PRKAA1 or PRKAA2), a beta (PRKAB1 or PRKAB2) and a gamma non- catalytic subunits (PRKAG1, PRKAG2 or PRKAG3). Interacts with FNIP1 and FNIP2.
INTERACTION: Q9Y478:PRKAB1; NbExp=3; IntAct=EBI-1181439, EBI-719769; O43741:PRKAB2; NbExp=3; IntAct=EBI-1181439, EBI-1053424;
DOMAIN: The AMPK pseudosubstrate motif resembles the sequence around sites phosphorylated on target proteins of AMPK, except the presence of a non-phosphorylatable residue in place of Ser. In the absence of AMP this pseudosubstrate sequence may bind to the active site groove on the alpha subunit (PRKAA1 or PRKAA2), preventing phosphorylation by the upstream activating kinase STK11/LKB1.
DOMAIN: The CBS domains mediate binding to AMP, ADP and ATP. 2 sites bind either AMP or ATP, whereas a third site contains a tightly bound AMP that does not exchange. Under physiological conditions AMPK mainly exists in its inactive form in complex with ATP, which is much more abundant than AMP.
PTM: Phosphorylated by ULK1 and ULK2; leading to negatively regulate AMPK activity and suggesting the existence of a regulatory feedback loop between ULK1, ULK2 and AMPK.
SIMILARITY: Belongs to the 5'-AMP-activated protein kinase gamma subunit family.
SIMILARITY: Contains 4 CBS domains.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 28.23 RPKM in Adrenal Gland
Total median expression: 859.62 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -8.8036-0.244 Picture PostScript Text
3' UTR -203.50625-0.326 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR013785 - Aldolase_TIM
IPR000644 - Cysta_beta_synth_core

Pfam Domains:
PF00571 - CBS domain

SCOP Domains:
54631 - CBS-domain pair

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2UV4 - X-ray MuPIT 2UV5 - X-ray MuPIT 2UV6 - X-ray MuPIT 2UV7 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P54619
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004691 cAMP-dependent protein kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008603 cAMP-dependent protein kinase regulator activity
GO:0016208 AMP binding
GO:0019901 protein kinase binding
GO:0043531 ADP binding
GO:0004679 AMP-activated protein kinase activity

Biological Process:
GO:0006110 regulation of glycolytic process
GO:0006468 protein phosphorylation
GO:0006629 lipid metabolic process
GO:0006631 fatty acid metabolic process
GO:0006633 fatty acid biosynthetic process
GO:0007050 cell cycle arrest
GO:0007165 signal transduction
GO:0007283 spermatogenesis
GO:0010628 positive regulation of gene expression
GO:0016236 macroautophagy
GO:0045860 positive regulation of protein kinase activity
GO:0051170 nuclear import

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005829 cytosol
GO:0016020 membrane
GO:0031588 nucleotide-activated protein kinase complex


-  Descriptions from all associated GenBank mRNAs
  LF210434 - JP 2014500723-A/17937: Polycomb-Associated Non-Coding RNAs.
AK097606 - Homo sapiens cDNA FLJ40287 fis, clone TESTI2027909, highly similar to 5'-AMP-ACTIVATED PROTEIN KINASE, GAMMA-1 SUBUNIT.
BC000358 - Homo sapiens protein kinase, AMP-activated, gamma 1 non-catalytic subunit, mRNA (cDNA clone MGC:8666 IMAGE:2964434), complete cds.
AK307994 - Homo sapiens cDNA, FLJ97942.
U42412 - Human 5'-AMP-activated protein kinase, gamma-1 subunit mRNA, complete cds.
LF337894 - JP 2014500723-A/145397: Polycomb-Associated Non-Coding RNAs.
JD386919 - Sequence 367943 from Patent EP1572962.
JD253019 - Sequence 234043 from Patent EP1572962.
JD085952 - Sequence 66976 from Patent EP1572962.
AK293332 - Homo sapiens cDNA FLJ58311 complete cds, highly similar to 5'-AMP-activated protein kinase subunit gamma-1.
JD455807 - Sequence 436831 from Patent EP1572962.
JD337329 - Sequence 318353 from Patent EP1572962.
LF337895 - JP 2014500723-A/145398: Polycomb-Associated Non-Coding RNAs.
JD095578 - Sequence 76602 from Patent EP1572962.
JD537092 - Sequence 518116 from Patent EP1572962.
JD318580 - Sequence 299604 from Patent EP1572962.
KJ891885 - Synthetic construct Homo sapiens clone ccsbBroadEn_01279 PRKAG1 gene, encodes complete protein.
KJ905283 - Synthetic construct Homo sapiens clone ccsbBroadEn_14783 PRKAG1 gene, encodes complete protein.
BT007345 - Homo sapiens protein kinase, AMP-activated, gamma 1 non-catalytic subunit mRNA, complete cds.
AB464094 - Synthetic construct DNA, clone: pF1KB5406, Homo sapiens PRKAG1 gene for protein kinase, AMP-activated, gamma 1 non-catalytic subunit, without stop codon, in Flexi system.
AK310250 - Homo sapiens cDNA, FLJ17292.
AK303276 - Homo sapiens cDNA FLJ60059 complete cds, highly similar to 5'-AMP-activated protein kinase subunit gamma-1.
MA446011 - JP 2018138019-A/17937: Polycomb-Associated Non-Coding RNAs.
MA573471 - JP 2018138019-A/145397: Polycomb-Associated Non-Coding RNAs.
MA573472 - JP 2018138019-A/145398: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_leptinPathway - Reversal of Insulin Resistance by Leptin
h_akap13Pathway - Rho-Selective Guanine Exchange Factor AKAP13 Mediates Stress Fiber Formation
h_chrebpPathway - ChREBP regulation by carbohydrates and cAMP
h_akap95Pathway - AKAP95 role in mitosis and chromosome dynamics
h_akapCentrosomePathway - Protein Kinase A at the Centrosome

Reactome (by CSHL, EBI, and GO)

Protein P54619 (Reactome details) participates in the following event(s):

R-HSA-380930 Phosphorylated AMPK binds AMP
R-HSA-380949 AMPK is dephosphorylated
R-HSA-200421 Activation of cytosolic AMPK by phosphorylation
R-HSA-5631941 SESN1,2,3 bind AMPK
R-HSA-5672011 p-AMPK:AMP binds the ULK complex
R-HSA-6805470 AMPK phosphorylates TP53
R-HSA-5665868 AMPK (complex) phosphorylates ULK1 (complex)
R-HSA-5675868 ULK1 phosphorylates ATG13 and RB1CC1
R-HSA-5679239 ULK complex translocates to the ER
R-HSA-380927 p-AMPK phosphorylates TSC1:TSC2
R-HSA-447074 AMPK phosphorylates Raptor in the mTORC1 complex
R-HSA-5673768 p-AMPK:AMP phosphorylates Raptor in the mTORC1 complex
R-HSA-1454699 AMPK-alpha2 phosphorylates TBC1D1
R-HSA-1592244 AMPK phosphorylates PPARGC1A
R-HSA-1632857 ULK1 phosphorylates AMBRA1:Beclin-1 complex
R-HSA-5679205 ULK1 phosphorylates Beclin-1
R-HSA-380972 Energy dependent regulation of mTOR by LKB1-AMPK
R-HSA-5628897 TP53 Regulates Metabolic Genes
R-HSA-1632852 Macroautophagy
R-HSA-165159 mTOR signalling
R-HSA-6804756 Regulation of TP53 Activity through Phosphorylation
R-HSA-3700989 Transcriptional Regulation by TP53
R-HSA-8953897 Cellular responses to external stimuli
R-HSA-162582 Signal Transduction
R-HSA-1445148 Translocation of GLUT4 to the plasma membrane
R-HSA-2151209 Activation of PPARGC1A (PGC-1alpha) by phosphorylation
R-HSA-5633007 Regulation of TP53 Activity
R-HSA-212436 Generic Transcription Pathway
R-HSA-199991 Membrane Trafficking
R-HSA-1592230 Mitochondrial biogenesis
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-5653656 Vesicle-mediated transport
R-HSA-1852241 Organelle biogenesis and maintenance
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: AAKG1_HUMAN, B4DDT7, ENST00000548065.1, ENST00000548065.2, ENST00000548065.3, ENST00000548065.4, ENST00000548065.5, ENST00000548065.6, NM_002733, P54619, Q8N7V9, uc324yzc.1, uc324yzc.2
UCSC ID: ENST00000548065.7_9
RefSeq Accession: NM_002733.5
Protein: P54619 (aka AAKG1_HUMAN or AAKG_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.