Human Gene PRKAR2B (ENST00000265717.5_4) from GENCODE V47lift37
  Description: protein kinase cAMP-dependent type II regulatory subunit beta (from RefSeq NM_002736.3)
Gencode Transcript: ENST00000265717.5_4
Gencode Gene: ENSG00000005249.14_8
Transcript (Including UTRs)
   Position: hg19 chr7:106,685,150-106,802,256 Size: 117,107 Total Exon Count: 11 Strand: +
Coding Region
   Position: hg19 chr7:106,685,353-106,800,027 Size: 114,675 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:106,685,150-106,802,256)mRNA (may differ from genome)Protein (418 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: KAP3_HUMAN
DESCRIPTION: RecName: Full=cAMP-dependent protein kinase type II-beta regulatory subunit;
FUNCTION: Regulatory subunit of the cAMP-dependent protein kinases involved in cAMP signaling in cells. Type II regulatory chains mediate membrane association by binding to anchoring proteins, including the MAP2 kinase.
SUBUNIT: The inactive form of the enzyme is composed of two regulatory chains and two catalytic chains. Activation by cAMP produces two active catalytic monomers and a regulatory dimer that binds four cAMP molecules. Interacts with the phosphorylated form of PJA2.
SUBCELLULAR LOCATION: Cytoplasm. Cell membrane. Note=Co-localizes with PJA2 in the cytoplasm and at the cell membrane.
TISSUE SPECIFICITY: Four types of regulatory chains are found: I- alpha, I-beta, II-alpha, and II-beta. Their expression varies among tissues and is in some cases constitutive and in others inducible.
PTM: Phosphorylated by the activated catalytic chain.
SIMILARITY: Belongs to the cAMP-dependent kinase regulatory chain family.
SIMILARITY: Contains 2 cyclic nucleotide-binding domains.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 52.87 RPKM in Adipose - Visceral (Omentum)
Total median expression: 542.89 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -119.70203-0.590 Picture PostScript Text
3' UTR -486.202229-0.218 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002373 - cAMP/cGMP_kin
IPR012198 - cAMP_dep_PK_reg_su
IPR003117 - cAMP_dep_PK_reg_su_I/II_a/b
IPR018490 - cNMP-bd-like
IPR018488 - cNMP-bd_CS
IPR000595 - cNMP-bd_dom
IPR014710 - RmlC-like_jellyroll

Pfam Domains:
PF00027 - Cyclic nucleotide-binding domain
PF02197 - Regulatory subunit of type II PKA R-subunit

SCOP Domains:
47391 - Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
51206 - cAMP-binding domain-like

ModBase Predicted Comparative 3D Structure on P31323
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004862 cAMP-dependent protein kinase inhibitor activity
GO:0005515 protein binding
GO:0008603 cAMP-dependent protein kinase regulator activity
GO:0019901 protein kinase binding
GO:0019904 protein domain specific binding
GO:0030552 cAMP binding
GO:0031625 ubiquitin protein ligase binding
GO:0034236 protein kinase A catalytic subunit binding

Biological Process:
GO:0000086 G2/M transition of mitotic cell cycle
GO:0001932 regulation of protein phosphorylation
GO:0003091 renal water homeostasis
GO:0006631 fatty acid metabolic process
GO:0007596 blood coagulation
GO:0007612 learning
GO:0010389 regulation of G2/M transition of mitotic cell cycle
GO:0034199 activation of protein kinase A activity
GO:0035556 intracellular signal transduction
GO:0045859 regulation of protein kinase activity
GO:0071377 cellular response to glucagon stimulus
GO:0097332 response to antipsychotic drug
GO:0097338 response to clozapine
GO:0097711 ciliary basal body docking
GO:2000480 negative regulation of cAMP-dependent protein kinase activity

Cellular Component:
GO:0005737 cytoplasm
GO:0005743 mitochondrial inner membrane
GO:0005813 centrosome
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0005952 cAMP-dependent protein kinase complex
GO:0016020 membrane
GO:0030425 dendrite
GO:0043025 neuronal cell body
GO:0043197 dendritic spine
GO:0043198 dendritic shaft
GO:0045121 membrane raft
GO:0048471 perinuclear region of cytoplasm
GO:0070062 extracellular exosome
GO:0097546 ciliary base
GO:0098794 postsynapse


-  Descriptions from all associated GenBank mRNAs
  BC075800 - Homo sapiens protein kinase, cAMP-dependent, regulatory, type II, beta, mRNA (cDNA clone MGC:87711 IMAGE:30331962), complete cds.
M31158 - Human cAMP-dependent protein kinase subunit RII-beta mRNA, complete cds.
A12297 - RII beta cDNA sequence.
AK128639 - Homo sapiens cDNA FLJ46798 fis, clone TRACH3031660, highly similar to cAMP-dependent protein kinase type II-beta regulatory subunit.
AK291441 - Homo sapiens cDNA FLJ77303 complete cds, highly similar to Homo sapiens protein kinase, cAMP-dependent, regulatory, type II, beta (PRKAR2B), mRNA.
CU687290 - Synthetic construct Homo sapiens gateway clone IMAGE:100022936 5' read PRKAR2B mRNA.
AB384742 - Synthetic construct DNA, clone: pF1KB3088, Homo sapiens PRKAR2B gene for cAMP-dependent protein kinase type II-beta regulatory subunit, complete cds, without stop codon, in Flexi system.
AM393700 - Synthetic construct Homo sapiens clone IMAGE:100002692 for hypothetical protein (PRKAR2B gene).
KJ897379 - Synthetic construct Homo sapiens clone ccsbBroadEn_06773 PRKAR2B gene, encodes complete protein.
KJ905286 - Synthetic construct Homo sapiens clone ccsbBroadEn_14787 PRKAR2B gene, encodes complete protein.
AM392728 - Synthetic construct Homo sapiens clone IMAGE:100002941 for hypothetical protein (PRKAR2B gene).
AM392771 - Synthetic construct Homo sapiens clone IMAGE:100002940 for hypothetical protein (PRKAR2B gene).
AM393258 - Synthetic construct Homo sapiens clone IMAGE:100002939 for hypothetical protein (PRKAR2B gene).
JD190323 - Sequence 171347 from Patent EP1572962.
JD461704 - Sequence 442728 from Patent EP1572962.
JD067003 - Sequence 48027 from Patent EP1572962.
JD289685 - Sequence 270709 from Patent EP1572962.
JD292288 - Sequence 273312 from Patent EP1572962.
JD020454 - Sequence 1478 from Patent EP1572962.
JD110100 - Sequence 91124 from Patent EP1572962.
JD034902 - Sequence 15926 from Patent EP1572962.
JD040327 - Sequence 21351 from Patent EP1572962.
JD113053 - Sequence 94077 from Patent EP1572962.
JD024090 - Sequence 5114 from Patent EP1572962.
JD028738 - Sequence 9762 from Patent EP1572962.
JD313273 - Sequence 294297 from Patent EP1572962.
JD432922 - Sequence 413946 from Patent EP1572962.
BC014355 - Homo sapiens protein kinase, cAMP-dependent, regulatory, type II, beta, mRNA (cDNA clone IMAGE:3686556), with apparent retained intron.
JD489845 - Sequence 470869 from Patent EP1572962.
JD092564 - Sequence 73588 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_cftrPathway - Cystic fibrosis transmembrane conductance regulator (CFTR) and beta 2 adrenergic receptor (b2AR) pathway
h_mCalpainPathway - mCalpain and friends in Cell motility
h_pparaPathway - Mechanism of Gene Regulation by Peroxisome Proliferators via PPARa(alpha)
h_CSKPathway - Activation of Csk by cAMP-dependent Protein Kinase Inhibits Signaling through the T Cell Receptor
h_carm1Pathway - Transcription Regulation by Methyltransferase of CARM1
h_dreampathway - Repression of Pain Sensation by the Transcriptional Regulator DREAM
h_nfatPathway - NFAT and Hypertrophy of the heart (Transcription in the broken heart)
h_shhPathway - Sonic Hedgehog (Shh) Pathway
h_badPathway - Regulation of BAD phosphorylation
h_plcePathway - Phospholipase C-epsilon pathway
h_chrebpPathway - ChREBP regulation by carbohydrates and cAMP
h_ck1Pathway - Regulation of ck1/cdk5 by type 1 glutamate receptors
h_nos1Pathway - Nitric Oxide Signaling Pathway
h_vipPathway - Neuropeptides VIP and PACAP inhibit the apoptosis of activated T cells
h_akapCentrosomePathway - Protein Kinase A at the Centrosome
h_agpcrPathway - Attenuation of GPCR Signaling
h_crebPathway - Transcription factor CREB and its extracellular signals
h_no1Pathway - Actions of Nitric Oxide in the Heart
h_stathminPathway - Stathmin and breast cancer resistance to antimicrotubule agents
h_igf1rPathway - Multiple antiapoptotic pathways from IGF-1R signaling lead to BAD phosphorylation
h_mPRPathway - How Progesterone Initiates the Oocyte Maturation
h_akap13Pathway - Rho-Selective Guanine Exchange Factor AKAP13 Mediates Stress Fiber Formation
h_akap95Pathway - AKAP95 role in mitosis and chromosome dynamics
h_GATA3pathway - GATA3 participate in activating the Th2 cytokine genes expression
h_gpcrPathway - Signaling Pathway from G-Protein Families

Reactome (by CSHL, EBI, and GO)

Protein P31323 (Reactome details) participates in the following event(s):

R-HSA-380272 Plk1-mediated phosphorylation of Nlp
R-HSA-380283 Recruitment of additional gamma tubulin/ gamma TuRC to the centrosome
R-HSA-380294 Loss of C-Nap-1 from centrosomes
R-HSA-380311 Recruitment of Plk1 to centrosomes
R-HSA-380455 Recruitment of CDK11p58 to the centrosomes
R-HSA-380303 Dissociation of Phospho-Nlp from the centrosome
R-HSA-5626220 C2CD3 binds the mother centriole
R-HSA-380508 Translocation of NuMA to the centrosomes
R-HSA-2574845 AJUBA binds centrosome-associated AURKA
R-HSA-8853405 TPX2 binds AURKA at centrosomes
R-HSA-3000319 BORA binds PLK1 and AURKA
R-HSA-2574840 AJUBA facilitates AURKA autophosphorylation
R-HSA-3000310 AURKA phosphorylates PLK1
R-HSA-5626223 C2CD3 and OFD1 recruit 5 distal appendage proteins to the centriole
R-HSA-5626681 Recruitment of transition zone proteins
R-HSA-5626227 CP110 and CEP97 dissociate from the centriole
R-HSA-992708 Dual-specific AKAPs bind type I and II PKA regulatory subunits
R-HSA-8951727 cAMP binds PKA tetramer
R-HSA-111925 cAMP induces dissociation of inactive PKA tetramers
R-HSA-5610749 cAMP dissociates PKA, promoting GLI processing
R-HSA-380316 Association of NuMA with microtubules
R-HSA-8853419 TPX2 promotes AURKA autophosphorylation
R-HSA-5626228 The distal appendage proteins recruit TTBK2
R-HSA-5638009 CEP164 recruits RAB3IP-carrying Golgi-derived vesicles to the basal body
R-HSA-381707 PKA:AKAP79:IQGAP1 complex dissociates to active PKA subunits in response to cAMP
R-HSA-5626699 MARK4 binds ODF2 in the centriole
R-HSA-5617816 RAB3IP stimulates nucleotide exchange on RAB8A
R-HSA-380259 Loss of Nlp from mitotic centrosomes
R-HSA-380270 Recruitment of mitotic centrosome proteins and complexes
R-HSA-380284 Loss of proteins required for interphase microtubule organization�from the centrosome
R-HSA-5620912 Anchoring of the basal body to the plasma membrane
R-HSA-380320 Recruitment of NuMA to mitotic centrosomes
R-HSA-2565942 Regulation of PLK1 Activity at G2/M Transition
R-HSA-8854518 AURKA Activation by TPX2
R-HSA-380287 Centrosome maturation
R-HSA-5617833 Cilium Assembly
R-HSA-983231 Factors involved in megakaryocyte development and platelet production
R-HSA-163615 PKA activation
R-HSA-180024 DARPP-32 events
R-HSA-432040 Vasopressin regulates renal water homeostasis via Aquaporins
R-HSA-164378 PKA activation in glucagon signalling
R-HSA-5610787 Hedgehog 'off' state
R-HSA-68877 Mitotic Prometaphase
R-HSA-69275 G2/M Transition
R-HSA-1852241 Organelle biogenesis and maintenance
R-HSA-381676 Glucagon-like Peptide-1 (GLP1) regulates insulin secretion
R-HSA-109582 Hemostasis
R-HSA-111931 PKA-mediated phosphorylation of CREB
R-HSA-111885 Opioid Signalling
R-HSA-445717 Aquaporin-mediated transport
R-HSA-163359 Glucagon signaling in metabolic regulation
R-HSA-5358351 Signaling by Hedgehog
R-HSA-68886 M Phase
R-HSA-453274 Mitotic G2-G2/M phases
R-HSA-422356 Regulation of insulin secretion
R-HSA-111933 Calmodulin induced events
R-HSA-418594 G alpha (i) signalling events
R-HSA-382551 Transport of small molecules
R-HSA-163685 Energy Metabolism
R-HSA-162582 Signal Transduction
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-111997 CaM pathway
R-HSA-388396 GPCR downstream signalling
R-HSA-1430728 Metabolism
R-HSA-1640170 Cell Cycle
R-HSA-111996 Ca-dependent events
R-HSA-1489509 DAG and IP3 signaling
R-HSA-372790 Signaling by GPCR
R-HSA-112043 PLC beta mediated events
R-HSA-9006925 Intracellular signaling by second messengers
R-HSA-112040 G-protein mediated events

-  Other Names for This Gene
  Alternate Gene Symbols: A4D0R9, ENST00000265717.1, ENST00000265717.2, ENST00000265717.3, ENST00000265717.4, KAP3_HUMAN, NM_002736, P31323, uc317idm.1, uc317idm.2
UCSC ID: ENST00000265717.5_4
RefSeq Accession: NM_002736.3
Protein: P31323 (aka KAP3_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.