Human Gene PRKCB (ENST00000321728.12_8) from GENCODE V47lift37
  Description: protein kinase C beta, transcript variant 1 (from RefSeq NM_212535.3)
Gencode Transcript: ENST00000321728.12_8
Gencode Gene: ENSG00000166501.14_14
Transcript (Including UTRs)
   Position: hg19 chr16:23,847,304-24,231,932 Size: 384,629 Total Exon Count: 17 Strand: +
Coding Region
   Position: hg19 chr16:23,847,497-24,231,434 Size: 383,938 Coding Exon Count: 17 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:23,847,304-24,231,932)mRNA (may differ from genome)Protein (671 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: KPCB_HUMAN
DESCRIPTION: RecName: Full=Protein kinase C beta type; Short=PKC-B; Short=PKC-beta; EC=2.7.11.13;
FUNCTION: Calcium-activated, phospholipid- and diacylglycerol (DAG)-dependent serine/threonine-protein kinase involved in various cellular processes such as regulation of the B-cell receptor (BCR) signalosome, oxidative stress-induced apoptosis, androgen receptor-dependent transcription regulation, insulin signaling and endothelial cells proliferation. Plays a key role in B-cell activation by regulating BCR-induced NF-kappa-B activation. Mediates the activation of the canonical NF-kappa-B pathway (NFKB1) by direct phosphorylation of CARD11/CARMA1 at 'Ser-559', 'Ser-644' and 'Ser-652'. Phosphorylation induces CARD11/CARMA1 association with lipid rafts and recruitment of the BCL10-MALT1 complex as well as MAP3K7/TAK1, which then activates IKK complex, resulting in nuclear translocation and activation of NFKB1. Plays a direct role in the negative feedback regulation of the BCR signaling, by down-modulating BTK function via direct phosphorylation of BTK at 'Ser-180', which results in the alteration of BTK plasma membrane localization and in turn inhibition of BTK activity. Involved in apoptosis following oxidative damage: in case of oxidative conditions, specifically phosphorylates 'Ser-36' of isoform p66Shc of SHC1, leading to mitochondrial accumulation of p66Shc, where p66Shc acts as a reactive oxygen species producer. Acts as a coactivator of androgen receptor (ANDR)-dependent transcription, by being recruited to ANDR target genes and specifically mediating phosphorylation of 'Thr-6' of histone H3 (H3T6ph), a specific tag for epigenetic transcriptional activation that prevents demethylation of histone H3 'Lys-4' (H3K4me) by LSD1/KDM1A. In insulin signaling, may function downstream of IRS1 in muscle cells and mediate insulin-dependent DNA synthesis through the RAF1- MAPK/ERK signaling cascade. May participate in the regulation of glucose transport in adipocytes by negatively modulating the insulin-stimulated translocation of the glucose transporter SLC2A4/GLUT4. Under high glucose in pancreatic beta-cells, is probably involved in the inhibition of the insulin gene transcription, via regulation of MYC expression. In endothelial cells, activation of PRKCB induces increased phosphorylation of RB1, increased VEGFA-induced cell proliferation, and inhibits PI3K/AKT-dependent nitric oxide synthase (NOS3/eNOS) regulation by insulin, which causes endothelial dysfunction. Also involved in triglyceride homeostasis (By similarity).
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
COFACTOR: Binds 3 calcium ions per subunit. The ions are bound to the C2 domain (By similarity).
ENZYME REGULATION: Classical (or conventional) PKCs (PRKCA, PRKCB and PRKCG) are activated by calcium and diacylglycerol (DAG) in the presence of phosphatidylserine. Three specific sites; Thr-500 (activation loop of the kinase domain), Thr-642 (turn motif) and Ser-661 (hydrophobic region), need to be phosphorylated for its full activation. Specifically inhibited by Enzastaurin (LY317615).
SUBUNIT: Interacts with PDK1 (By similarity). Interacts in vitro with PRKCBP1. Interacts with PHLPP1 and PHLPP2; both proteins mediate its dephosphorylation. Interacts with KDM1A/LSD1, PKN1 and ANDR.
SUBCELLULAR LOCATION: Cytoplasm (By similarity). Nucleus. Membrane; Peripheral membrane protein (By similarity).
PTM: Phosphorylation on Thr-500 within the activation loop renders it competent to autophosphorylate. Subsequent autophosphorylation of Thr-642 maintains catalytic competence, and autophosphorylation on Ser-661 appears to release the kinase into the cytosol. Autophosphorylation on other sites i.e. in the N-terminal and hinge regions have no effect on enzyme activity. Phosphorylation at Tyr-662 by SYK induces binding with GRB2 and contributes to the activation of MAPK/ERK signaling cascade (By similarity).
SIMILARITY: Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
SIMILARITY: Contains 1 AGC-kinase C-terminal domain.
SIMILARITY: Contains 1 C2 domain.
SIMILARITY: Contains 2 phorbol-ester/DAG-type zinc fingers.
SIMILARITY: Contains 1 protein kinase domain.
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/prkcb1/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PRKCB
Diseases sorted by gene-association score: glioblastoma (7), hyperglycemia (4), microvascular complications of diabetes 5 (3), autistic disorder (2), amphetamine abuse (2), eye disease (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 48.07 RPKM in Brain - Frontal Cortex (BA9)
Total median expression: 403.36 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -107.30193-0.556 Picture PostScript Text
3' UTR -123.20498-0.247 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000961 - AGC-kinase_C
IPR000008 - C2_Ca-dep
IPR008973 - C2_Ca/lipid-bd_dom_CaLB
IPR020477 - C2_dom
IPR018029 - C2_membr_targeting
IPR020454 - DAG/PE-bd
IPR011009 - Kinase-like_dom
IPR017892 - Pkinase_C
IPR002219 - Prot_Kinase_C-like_PE/DAG-bd
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR014375 - Protein_kinase_C_a/b/g
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF00130 - Phorbol esters/diacylglycerol binding domain (C1 domain)
PF00168 - C2 domain
PF00433 - Protein kinase C terminal domain
PF07714 - Protein tyrosine and serine/threonine kinase

SCOP Domains:
49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
56112 - Protein kinase-like (PK-like)
57889 - Cysteine-rich domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2I0E - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P05771
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details  Gene Details 
Gene SorterGene Sorter  Gene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003682 chromatin binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0004697 protein kinase C activity
GO:0004698 calcium-dependent protein kinase C activity
GO:0005080 protein kinase C binding
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008270 zinc ion binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0030374 ligand-dependent nuclear receptor transcription coactivator activity
GO:0035403 histone kinase activity (H3-T6 specific)
GO:0042393 histone binding
GO:0046872 metal ion binding
GO:0050681 androgen receptor binding

Biological Process:
GO:0002250 adaptive immune response
GO:0002376 immune system process
GO:0006325 chromatin organization
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0006468 protein phosphorylation
GO:0006915 apoptotic process
GO:0007077 mitotic nuclear envelope disassembly
GO:0007165 signal transduction
GO:0010829 negative regulation of glucose transport
GO:0016310 phosphorylation
GO:0018105 peptidyl-serine phosphorylation
GO:0030168 platelet activation
GO:0030949 positive regulation of vascular endothelial growth factor receptor signaling pathway
GO:0035408 histone H3-T6 phosphorylation
GO:0035556 intracellular signal transduction
GO:0042113 B cell activation
GO:0042953 lipoprotein transport
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0045637 regulation of myeloid cell differentiation
GO:0045766 positive regulation of angiogenesis
GO:0046627 negative regulation of insulin receptor signaling pathway
GO:0050853 B cell receptor signaling pathway
GO:0050861 positive regulation of B cell receptor signaling pathway
GO:0051092 positive regulation of NF-kappaB transcription factor activity

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  BC036472 - Homo sapiens protein kinase C, beta, mRNA (cDNA clone MGC:41878 IMAGE:5260547), complete cds.
X07109 - Human mRNA for protein kinase C (PKC) type beta II.
X06318 - Human mRNA for protein kinase C (PKC) type beta I.
M13975 - Homo sapiens protein kinase C beta-II type (PRKCB1) mRNA, complete cds.
AB587511 - Synthetic construct DNA, clone: pF1KB9948, Homo sapiens PRKCB gene for protein kinase C, beta, without stop codon, in Flexi system.
EU832791 - Synthetic construct Homo sapiens clone HAIB:100067820; DKFZo008C1033 protein kinase C, beta 1 protein (PRKCB1) gene, encodes complete protein.
GQ129253 - Synthetic construct Homo sapiens clone HAIB:100068480; DKFZo004C1034 protein kinase C, beta 1 protein (PRKCB1) gene, partial cds.
KJ891888 - Synthetic construct Homo sapiens clone ccsbBroadEn_01282 PRKCB gene, encodes complete protein.
KJ905287 - Synthetic construct Homo sapiens clone ccsbBroadEn_14789 PRKCB gene, encodes complete protein.
DL491573 - Novel nucleic acids.
DL490174 - Novel nucleic acids.
JD139659 - Sequence 120683 from Patent EP1572962.
JD023002 - Sequence 4026 from Patent EP1572962.
JD033248 - Sequence 14272 from Patent EP1572962.
AL833252 - Homo sapiens mRNA; cDNA DKFZp761J0720 (from clone DKFZp761J0720).
BC045175 - Homo sapiens cDNA clone IMAGE:5277735, with apparent retained intron.
AK123381 - Homo sapiens cDNA FLJ41387 fis, clone BRCAN2024259, weakly similar to PROTEIN KINASE C, BETA-I TYPE (EC 2.7.1.-).
AK057555 - Homo sapiens cDNA FLJ32993 fis, clone THYMU1000103, weakly similar to PROTEIN KINASE C, BETA-I TYPE (EC 2.7.1.-).

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_cxcr4Pathway - CXCR4 Signaling Pathway
h_pdgfPathway - PDGF Signaling Pathway
h_srcRPTPPathway - Activation of Src by Protein-tyrosine phosphatase alpha
h_Par1Pathway - Thrombin signaling and protease-activated receptors
h_arenrf2Pathway - Oxidative Stress Induced Gene Expression Via Nrf2
h_bcrPathway - BCR Signaling Pathway
h_cblPathway - CBL mediated ligand-induced downregulation of EGF receptors
h_pkcPathway - Activation of PKC through G protein coupled receptor
h_pparaPathway - Mechanism of Gene Regulation by Peroxisome Proliferators via PPARa(alpha)
h_vegfPathway - VEGF, Hypoxia, and Angiogenesis
h_keratinocytePathway - Keratinocyte Differentiation
h_Ccr5Pathway - Pertussis toxin-insensitive CCR5 Signaling in Macrophage
h_calcineurinPathway - Effects of calcineurin in Keratinocyte Differentiation
h_cardiacegfPathway - Role of EGF Receptor Transactivation by GPCRs in Cardiac Hypertrophy
h_erbB4pathway - g-Secretase mediated ErbB4 Signaling Pathway
h_plcPathway - Phospholipase C Signaling Pathway
h_CCR3Pathway - CCR3 signaling in Eosinophils
h_agpcrPathway - Attenuation of GPCR Signaling
h_gpcrPathway - Signaling Pathway from G-Protein Families
h_ionPathway - Ion Channel and Phorbal Esters Signaling Pathway
h_chemicalPathway - Apoptotic Signaling in Response to DNA Damage
h_fcer1Pathway - Fc Epsilon Receptor I Signaling in Mast Cells
h_tcrPathway - T Cell Receptor Signaling Pathway
h_TPOPathway - TPO Signaling Pathway
h_edg1Pathway - Phospholipids as signalling intermediaries
h_myosinPathway - PKC-catalyzed phosphorylation of inhibitory phosphoprotein of myosin phosphatase
h_cdMacPathway - Cadmium induces DNA synthesis and proliferation in macrophages
h_egfPathway - EGF Signaling Pathway
h_eif4Pathway - Regulation of eIF4e and p70 S6 Kinase
h_mef2dPathway - Role of MEF2D in T-cell Apoptosis
h_nos1Pathway - Nitric Oxide Signaling Pathway
h_plcdPathway - Phospholipase C d1 in phospholipid associated cell signaling
h_sppaPathway - Aspirin Blocks Signaling Pathway Involved in Platelet Activation
h_trkaPathway - Trka Receptor Signaling Pathway
h_At1rPathway - Angiotensin II mediated activation of JNK Pathway via Pyk2 dependent signaling
h_crebPathway - Transcription factor CREB and its extracellular signals
h_ghPathway - Growth Hormone Signaling Pathway
h_pyk2Pathway - Links between Pyk2 and Map Kinases
h_biopeptidesPathway - Bioactive Peptide Induced Signaling Pathway

Reactome (by CSHL, EBI, and GO)

Protein P05771 (Reactome details) participates in the following event(s):

R-HSA-1168373 PRKCB (Protein kinase C beta, PKC-beta) binds diacylglycerol and phosphatidylserine
R-HSA-114553 Activation of conventional Protein Kinase C
R-HSA-5218821 PDK1 phosphorylates PKC
R-HSA-5218813 DAG and Ca+2 bind to PKC and tether it to membrane
R-HSA-5218805 PKC autophosphorylates
R-HSA-5223304 DAG and Ca+2 bind to PKC and tether it to membrane
R-HSA-8982703 PKC binds active G alpha (z)
R-HSA-8982709 G-alpha(z):PKC dissociates to give phosphorylated G alpha (z)
R-HSA-114683 Phosphorylation of Platelet Sec-1
R-HSA-114684 Phosphorylation of Syntaxin-4
R-HSA-416639 Trafficking of GluR2-containing AMPA receptors to extrasynaptic sites
R-HSA-421007 Endocytosis of Ca impermeable AMPA receptors
R-HSA-5138432 DVL2 is phosphorylated by PKC
R-HSA-5218823 PKC phosphorylates sphingosine kinase 1
R-HSA-751040 PKC phosphorylates G alpha (z)
R-HSA-1169091 Activation of NF-kappaB in B cells
R-HSA-8939246 RUNX1 regulates transcription of genes involved in differentiation of myeloid cells
R-HSA-76005 Response to elevated platelet cytosolic Ca2+
R-HSA-5218921 VEGFR2 mediated cell proliferation
R-HSA-1168372 Downstream signaling events of B Cell Receptor (BCR)
R-HSA-8878171 Transcriptional regulation by RUNX1
R-HSA-4419969 Depolymerisation of the Nuclear Lamina
R-HSA-76002 Platelet activation, signaling and aggregation
R-HSA-4420097 VEGFA-VEGFR2 Pathway
R-HSA-983705 Signaling by the B Cell Receptor (BCR)
R-HSA-212436 Generic Transcription Pathway
R-HSA-2980766 Nuclear Envelope Breakdown
R-HSA-109582 Hemostasis
R-HSA-194138 Signaling by VEGF
R-HSA-1280218 Adaptive Immune System
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-418597 G alpha (z) signalling events
R-HSA-114516 Disinhibition of SNARE formation
R-HSA-416993 Trafficking of GluR2-containing AMPA receptors
R-HSA-5099900 WNT5A-dependent internalization of FZD4
R-HSA-68875 Mitotic Prophase
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-168256 Immune System
R-HSA-74160 Gene expression (Transcription)
R-HSA-388396 GPCR downstream signalling
R-HSA-399719 Trafficking of AMPA receptors
R-HSA-4086400 PCP/CE pathway
R-HSA-68886 M Phase
R-HSA-162582 Signal Transduction
R-HSA-372790 Signaling by GPCR
R-HSA-399721 Glutamate binding, activation of AMPA receptors and synaptic plasticity
R-HSA-3858494 Beta-catenin independent WNT signaling
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-112314 Neurotransmitter receptors and postsynaptic signal transmission
R-HSA-195721 Signaling by WNT
R-HSA-1640170 Cell Cycle
R-HSA-112315 Transmission across Chemical Synapses
R-HSA-112316 Neuronal System

-  Other Names for This Gene
  Alternate Gene Symbols: C5IFJ8, D3DWF5, ENST00000321728.1, ENST00000321728.10, ENST00000321728.11, ENST00000321728.2, ENST00000321728.3, ENST00000321728.4, ENST00000321728.5, ENST00000321728.6, ENST00000321728.7, ENST00000321728.8, ENST00000321728.9, KPCB_HUMAN, NM_212535, O43744, P05127, P05771, PKCB, PRKCB1, Q15138, Q93060, Q9UE49, Q9UE50, Q9UEH8, Q9UJ30, Q9UJ33, uc317rcx.1, uc317rcx.2
UCSC ID: ENST00000321728.12_8
RefSeq Accession: NM_212535.3
Protein: P05771 (aka KPCB_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.