Human Gene PRKCI (ENST00000295797.5_4) from GENCODE V47lift37
  Description: protein kinase C iota (from RefSeq NM_002740.6)
Gencode Transcript: ENST00000295797.5_4
Gencode Gene: ENSG00000163558.13_7
Transcript (Including UTRs)
   Position: hg19 chr3:169,940,212-170,023,765 Size: 83,554 Total Exon Count: 18 Strand: +
Coding Region
   Position: hg19 chr3:169,940,458-170,020,915 Size: 80,458 Coding Exon Count: 18 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:169,940,212-170,023,765)mRNA (may differ from genome)Protein (596 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: KPCI_HUMAN
DESCRIPTION: RecName: Full=Protein kinase C iota type; EC=2.7.11.13; AltName: Full=Atypical protein kinase C-lambda/iota; Short=PRKC-lambda/iota; Short=aPKC-lambda/iota; AltName: Full=nPKC-iota;
FUNCTION: Calcium- and diacylglycerol-independent serine/ threonine-protein kinase that plays a general protective role against apoptotic stimuli, is involved in NF-kappa-B activation, cell survival, differentiation and polarity, and contributes to the regulation of microtubule dynamics in the early secretory pathway. Is necessary for BCR-ABL oncogene-mediated resistance to apoptotic drug in leukemia cells, protecting leukemia cells against drug-induced apoptosis. In cultured neurons, prevents amyloid beta protein-induced apoptosis by interrupting cell death process at a very early step. In glioblastoma cells, may function downstream of phosphatidylinositol 3-kinase (PI(3)K) and PDPK1 in the promotion of cell survival by phosphorylating and inhibiting the pro-apoptotic factor BAD. Can form a protein complex in non- small cell lung cancer (NSCLC) cells with PARD6A and ECT2 and regulate ECT2 oncogenic activity by phosphorylation, which in turn promotes transformed growth and invasion. In response to nerve growth factor (NGF), acts downstream of SRC to phosphorylate and activate IRAK1, allowing the subsequent activation of NF-kappa-B and neuronal cell survival. Functions in the organization of the apical domain in epithelial cells by phosphorylating EZR. This step is crucial for activation and normal distribution of EZR at the early stages of intestinal epithelial cell differentiation. Forms a protein complex with LLGL1 and PARD6B independently of PARD3 to regulate epithelial cell polarity. Plays a role in microtubule dynamics in the early secretory pathway through interaction with RAB2A and GAPDH and recruitment to vesicular tubular clusters (VTCs). In human coronary artery endothelial cells (HCAEC), is activated by saturated fatty acids and mediates lipid-induced apoptosis.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
ENZYME REGULATION: Atypical PKCs (PRKCI and PRKCZ) exhibit an elevated basal enzymatic activity (that may be due to the interaction with SMG1 or SQSTM1) and are not regulated by diacylglycerol, phosphatidylserine, phorbol esters or calcium ions. Two specific sites, Thr-412 (activation loop of the kinase domain) and Thr-564 (turn motif), need to be phosphorylated for its full activation (By similarity). Might also be a target for novel lipid activators that are elevated during nutrient- stimulated insulin secretion.
BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=13.5 uM for ATP (for recombinant purified PRKCI); Vmax=7.4 pmol/min/mg enzyme;
SUBUNIT: Forms a complex with SQSTM1 and MP2K5 (By similarity). Interacts directly with SQSTM1 (Probable). Interacts with IKBKB. Interacts with PARD6A, PARD6B and PARD6G. Part of a quaternary complex containing aPKC, PARD3, a PARD6 protein (PARD6A, PARD6B or PARD6G) and a GTPase protein (CDC42 or RAC1). Part of a complex with LLGL1 and PARD6B. Interacts with ADAP1/CENTA1. Interaction with SMG1, through the ZN-finger domain, activates the kinase activity. Interacts with CDK7. Forms a complex with RAB2A and GAPDH involved in recruitment onto the membrane of vesicular tubular clusters (VTCs). Interacts with ECT2 ('Thr-359' phosphorylated form). Interacts with PARD6A.
INTERACTION: P60953:CDC42; NbExp=5; IntAct=EBI-286199, EBI-81752; Q96L34:MARK4; NbExp=2; IntAct=EBI-286199, EBI-302319; Q8TEW0:PARD3; NbExp=3; IntAct=EBI-286199, EBI-81968; Q9NPB6:PARD6A; NbExp=9; IntAct=EBI-286199, EBI-81876; Q9BYG5:PARD6B; NbExp=9; IntAct=EBI-286199, EBI-295391; Q9BYG4:PARD6G; NbExp=5; IntAct=EBI-286199, EBI-295417; Q8ND90:PNMA1; NbExp=2; IntAct=EBI-286199, EBI-302345; P63000:RAC1; NbExp=3; IntAct=EBI-286199, EBI-413628; Q04917:YWHAH; NbExp=3; IntAct=EBI-286199, EBI-306940;
SUBCELLULAR LOCATION: Cytoplasm. Membrane. Endosome. Nucleus. Note=Transported into the endosome through interaction with SQSTM1/p62. After phosphorylation by SRC, transported into the nucleus through interaction with KPNB1. Colocalizes with CDK7 in the cytoplasm and nucleus. Transported to vesicular tubular clusters (VTCs) through interaction with RAB2A.
TISSUE SPECIFICITY: Predominantly expressed in lung and brain, but also expressed at lower levels in many tissues including pancreatic islets. Highly expressed in non-small cell lung cancers.
DOMAIN: The OPR domain mediates interaction with SQSTM1 (By similarity).
DOMAIN: The C1 domain does not bind diacylglycerol (DAG).
PTM: On neuronal growth factor (NGF) stimulation, phosphorylated by SRC at Tyr-265, Tyr-280 and Tyr-334. Phosphorylation at Tyr-265 facilitates binding to KPNB1/importin-beta regulating entry of PRKCI into the nucleus. Phosphorylation on Tyr-334 is important for NF-kappa-B stimulation.
SIMILARITY: Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
SIMILARITY: Contains 1 AGC-kinase C-terminal domain.
SIMILARITY: Contains 1 OPR domain.
SIMILARITY: Contains 1 phorbol-ester/DAG-type zinc finger.
SIMILARITY: Contains 1 protein kinase domain.
SEQUENCE CAUTION: Sequence=AAA60171.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=AAB17011.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=AAH22016.3; Type=Erroneous initiation; Note=Translation N-terminally extended;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PRKCI
Diseases sorted by gene-association score: glioblastoma (5), lung squamous cell carcinoma (3), lung cancer (3)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 13.45 RPKM in Thyroid
Total median expression: 349.34 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -142.30246-0.578 Picture PostScript Text
3' UTR -650.402850-0.228 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000961 - AGC-kinase_C
IPR020454 - DAG/PE-bd
IPR011009 - Kinase-like_dom
IPR000270 - OPR_PB1
IPR012233 - PKC_zeta
IPR017892 - Pkinase_C
IPR002219 - Prot_Kinase_C-like_PE/DAG-bd
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF00130 - Phorbol esters/diacylglycerol binding domain (C1 domain)
PF00433 - Protein kinase C terminal domain
PF00564 - PB1 domain
PF07714 - Protein tyrosine and serine/threonine kinase

SCOP Domains:
56112 - Protein kinase-like (PK-like)
54277 - CAD & PB1 domains
57889 - Cysteine-rich domain
57903 - FYVE/PHD zinc finger

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1VD2 - NMR MuPIT 1WMH - X-ray MuPIT 1ZRZ - X-ray MuPIT 3A8W - X-ray MuPIT 3A8X - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P41743
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0004697 protein kinase C activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0005543 phospholipid binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0019904 protein domain specific binding
GO:0046872 metal ion binding

Biological Process:
GO:0006468 protein phosphorylation
GO:0006612 protein targeting to membrane
GO:0007010 cytoskeleton organization
GO:0007015 actin filament organization
GO:0010976 positive regulation of neuron projection development
GO:0016192 vesicle-mediated transport
GO:0016310 phosphorylation
GO:0016477 cell migration
GO:0018105 peptidyl-serine phosphorylation
GO:0032869 cellular response to insulin stimulus
GO:0034351 negative regulation of glial cell apoptotic process
GO:0034613 cellular protein localization
GO:0035089 establishment of apical/basal cell polarity
GO:0035556 intracellular signal transduction
GO:0042462 eye photoreceptor cell development
GO:0043066 negative regulation of apoptotic process
GO:0043434 response to peptide hormone
GO:0043524 negative regulation of neuron apoptotic process
GO:0045197 establishment or maintenance of epithelial cell apical/basal polarity
GO:0045216 cell-cell junction organization
GO:0045747 positive regulation of Notch signaling pathway
GO:0046326 positive regulation of glucose import
GO:0046903 secretion
GO:0048194 Golgi vesicle budding
GO:0051092 positive regulation of NF-kappaB transcription factor activity
GO:0060252 positive regulation of glial cell proliferation
GO:0061024 membrane organization
GO:0070555 response to interleukin-1
GO:0070830 bicellular tight junction assembly
GO:1903078 positive regulation of protein localization to plasma membrane
GO:2000353 positive regulation of endothelial cell apoptotic process

Cellular Component:
GO:0000139 Golgi membrane
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005768 endosome
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0005923 bicellular tight junction
GO:0015630 microtubule cytoskeleton
GO:0016020 membrane
GO:0016324 apical plasma membrane
GO:0031252 cell leading edge
GO:0032991 macromolecular complex
GO:0043220 Schmidt-Lanterman incisure
GO:0045171 intercellular bridge
GO:0045177 apical part of cell
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  LF383789 - JP 2014500723-A/191292: Polycomb-Associated Non-Coding RNAs.
L18964 - Human protein kinase C iota isoform (PRKCI) mRNA, complete cds.
BC022016 - Homo sapiens protein kinase C, iota, mRNA (cDNA clone MGC:26534 IMAGE:4823853), complete cds.
L33881 - Human protein kinase C iota isoform, complete cds.
AK315342 - Homo sapiens cDNA, FLJ96384, highly similar to Homo sapiens protein kinase C, iota (PRKCI), mRNA.
AB590674 - Synthetic construct DNA, clone: pFN21AB4048, Homo sapiens PRKCI gene for protein kinase C, iota, without stop codon, in Flexi system.
KJ905290 - Synthetic construct Homo sapiens clone ccsbBroadEn_14793 PRKCI gene, encodes complete protein.
AB451443 - Homo sapiens PRKCI mRNA for protein kinase C iota type, partial cds, clone: FLJ08175AAAF.
MA619366 - JP 2018138019-A/191292: Polycomb-Associated Non-Coding RNAs.
JD227833 - Sequence 208857 from Patent EP1572962.
JD139175 - Sequence 120199 from Patent EP1572962.
LF351299 - JP 2014500723-A/158802: Polycomb-Associated Non-Coding RNAs.
LF351302 - JP 2014500723-A/158805: Polycomb-Associated Non-Coding RNAs.
LF351303 - JP 2014500723-A/158806: Polycomb-Associated Non-Coding RNAs.
LF351304 - JP 2014500723-A/158807: Polycomb-Associated Non-Coding RNAs.
MA586876 - JP 2018138019-A/158802: Polycomb-Associated Non-Coding RNAs.
MA586879 - JP 2018138019-A/158805: Polycomb-Associated Non-Coding RNAs.
MA586880 - JP 2018138019-A/158806: Polycomb-Associated Non-Coding RNAs.
MA586881 - JP 2018138019-A/158807: Polycomb-Associated Non-Coding RNAs.
LF351305 - JP 2014500723-A/158808: Polycomb-Associated Non-Coding RNAs.
BC042405 - Homo sapiens protein kinase C, iota, mRNA (cDNA clone IMAGE:4831064).
LF351309 - JP 2014500723-A/158812: Polycomb-Associated Non-Coding RNAs.
LF351311 - JP 2014500723-A/158814: Polycomb-Associated Non-Coding RNAs.
JD481537 - Sequence 462561 from Patent EP1572962.
LF351315 - JP 2014500723-A/158818: Polycomb-Associated Non-Coding RNAs.
LF351316 - JP 2014500723-A/158819: Polycomb-Associated Non-Coding RNAs.
LF351317 - JP 2014500723-A/158820: Polycomb-Associated Non-Coding RNAs.
LF351318 - JP 2014500723-A/158821: Polycomb-Associated Non-Coding RNAs.
MA586882 - JP 2018138019-A/158808: Polycomb-Associated Non-Coding RNAs.
MA586886 - JP 2018138019-A/158812: Polycomb-Associated Non-Coding RNAs.
MA586888 - JP 2018138019-A/158814: Polycomb-Associated Non-Coding RNAs.
MA586892 - JP 2018138019-A/158818: Polycomb-Associated Non-Coding RNAs.
MA586893 - JP 2018138019-A/158819: Polycomb-Associated Non-Coding RNAs.
MA586894 - JP 2018138019-A/158820: Polycomb-Associated Non-Coding RNAs.
MA586895 - JP 2018138019-A/158821: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P41743 (Reactome details) participates in the following event(s):

R-HSA-193684 p62 recruits an atypical PKC
R-HSA-419981 Recruitment of PAR-3:PAR-6:aPKC complex to tight junctions
R-HSA-9021357 PRKCI phosphorylates ELF3
R-HSA-209543 p75NTR recruits signalling complexes
R-HSA-420029 Tight junction interactions
R-HSA-193639 p75NTR signals via NF-kB
R-HSA-1912408 Pre-NOTCH Transcription and Translation
R-HSA-421270 Cell-cell junction organization
R-HSA-193704 p75 NTR receptor-mediated signalling
R-HSA-1912422 Pre-NOTCH Expression and Processing
R-HSA-446728 Cell junction organization
R-HSA-73887 Death Receptor Signalling
R-HSA-157118 Signaling by NOTCH
R-HSA-1500931 Cell-Cell communication
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: D3DNQ4, DXS1179E, ENST00000295797.1, ENST00000295797.2, ENST00000295797.3, ENST00000295797.4, KPCI_HUMAN, NM_002740, P41743, Q8WW06, uc317loh.1, uc317loh.2
UCSC ID: ENST00000295797.5_4
RefSeq Accession: NM_002740.6
Protein: P41743 (aka KPCI_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.