Human Gene PRKCZ (ENST00000378567.8_5) from GENCODE V47lift37
  Description: protein kinase C zeta, transcript variant 1 (from RefSeq NM_002744.6)
Gencode Transcript: ENST00000378567.8_5
Gencode Gene: ENSG00000067606.17_12
Transcript (Including UTRs)
   Position: hg19 chr1:1,981,850-2,116,834 Size: 134,985 Total Exon Count: 18 Strand: +
Coding Region
   Position: hg19 chr1:1,982,070-2,116,448 Size: 134,379 Coding Exon Count: 18 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:1,981,850-2,116,834)mRNA (may differ from genome)Protein (592 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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-  Comments and Description Text from UniProtKB
  ID: KPCZ_HUMAN
DESCRIPTION: RecName: Full=Protein kinase C zeta type; EC=2.7.11.13; AltName: Full=nPKC-zeta;
FUNCTION: Calcium- and diacylglycerol-independent serine/threonine-protein kinase that functions in phosphatidylinositol 3-kinase (PI3K) pathway and mitogen-activated protein (MAP) kinase cascade, and is involved in NF-kappa-B activation, mitogenic signaling, cell proliferation, cell polarity, inflammatory response and maintenance of long-term potentiation (LTP). Upon lipopolysaccharide (LPS) treatment in macrophages, or following mitogenic stimuli, functions downstream of PI3K to activate MAP2K1/MEK1-MAPK1/ERK2 signaling cascade independently of RAF1 activation. Required for insulin-dependent activation of AKT3, but may function as an adapter rather than a direct activator. Upon insulin treatment may act as a downstream effector of PI3K and contribute to the activation of translocation of the glucose transporter SLC2A4/GLUT4 and subsequent glucose transport in adipocytes. In EGF-induced cells, binds and activates MAP2K5/MEK5-MAPK7/ERK5 independently of its kinase activity and can activate JUN promoter through MEF2C. Through binding with SQSTM1/p62, functions in interleukin-1 signaling and activation of NF-kappa-B with the specific adapters RIPK1 and TRAF6. Participates in TNF-dependent transactivation of NF-kappa-B by phosphorylating and activating IKBKB kinase, which in turn leads to the degradation of NF-kappa-B inhibitors. In migrating astrocytes, forms a cytoplasmic complex with PARD6A and is recruited by CDC42 to function in the establishment of cell polarity along with the microtubule motor and dynein. In association with FEZ1, stimulates neuronal differentiation in PC12 cells. In inflammatory response, is required for the T-helper 2 (Th2) differentiation process, including interleukines production, efficient activation of JAK1 and the subsequent phosphorylation and nuclear translocation of STAT6. May be involved in development of allergic airway inflammation (asthma), a process dependent on Th2 immune response. In NF-kappa-B-mediated inflammatory response, can relieve the SETD6-dependent repression of NF-kappa-B target genes by phosphorylating the RELA subunit at 'Ser-311'. Is necessary and sufficient for LTP maintenance in hippocampal CA1 pyramidal cells.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
ENZYME REGULATION: Atypical PKCs (PRKCI and PRKCZ) exhibit an elevated basal enzymatic activity (that may be due to the interaction with SMG1 or SQSTM1) and are not regulated by diacylglycerol, phosphatidylserine, phorbol esters or calcium ions. Two specific sites, Thr-410 (activation loop of the kinase domain) and Thr-560 (turn motif), need to be phosphorylated for its full activation. Phosphatidylinositol 3,4,5-trisphosphate might be a physiological activator (By similarity).
SUBUNIT: Forms a ternary complex with SQSTM1 and KCNAB2. Forms another ternary complex with SQSTM1 and GABRR3. Forms a complex with SQSTM1 and MAP2K5 (By similarity). Interacts with PARD6A, PARD6B, PARD6G and SQSTM1. Part of a complex with PARD3, PARD6A or PARD6B or PARD6G and CDC42 or RAC1. Interacts with ADAP1/CENTA1. Forms a ternary complex composed of SQSTM1 and PAWR. Interacts directly with SQSTM1 (Probable). Interacts with IKBKB. Interacts (via the protein kinase domain) with WWC1. Forms a tripartite complex with WWC1 and DDR1, but predominantly in the absence of collagen. Component of the Par polarity complex, composed of at least phosphorylated PRKCZ, PARD3 and TIAM1. Interacts with PDPK1 (via N-terminus region).
INTERACTION: Q9NPB6:PARD6A; NbExp=3; IntAct=EBI-295351, EBI-81876; Q9BYG5:PARD6B; NbExp=3; IntAct=EBI-295351, EBI-295391; Q04759:PRKCQ; NbExp=3; IntAct=EBI-295351, EBI-374762;
SUBCELLULAR LOCATION: Cytoplasm. Endosome. Cell junction. Note=In the retina, localizes in the terminals of the rod bipolar cells (By similarity). Associates with endosomes. Presence of KRIT1, CDH5 and RAP1B is required for its localization to the cell junction.
TISSUE SPECIFICITY: Expressed in brain, and to a lesser extent in lung, kidney and testis.
DOMAIN: The OPR domain mediates mutually exclusive interactions with SQSTM1 and PARD6B.
DOMAIN: The C1 domain does not bind the diacylglycerol (DAG).
PTM: CDH5 is required for its phosphorylation at Thr-410. Phosphorylated by protein kinase PDPK1; phosphorylation is inhibited by the apoptotic C-terminus cleavage product of PKN2.
SIMILARITY: Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
SIMILARITY: Contains 1 AGC-kinase C-terminal domain.
SIMILARITY: Contains 1 OPR domain.
SIMILARITY: Contains 1 phorbol-ester/DAG-type zinc finger.
SIMILARITY: Contains 1 protein kinase domain.
SEQUENCE CAUTION: Sequence=CAA78813.1; Type=Erroneous initiation; Note=Translation N-terminally extended;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PRKCZ
Diseases sorted by gene-association score: chromosome 1p36 deletion syndrome (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 39.96 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 329.11 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -124.50220-0.566 Picture PostScript Text
3' UTR -153.10386-0.397 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000961 - AGC-kinase_C
IPR020454 - DAG/PE-bd
IPR011009 - Kinase-like_dom
IPR000270 - OPR_PB1
IPR012233 - PKC_zeta
IPR017892 - Pkinase_C
IPR002219 - Prot_Kinase_C-like_PE/DAG-bd
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF00130 - Phorbol esters/diacylglycerol binding domain (C1 domain)
PF00433 - Protein kinase C terminal domain
PF00564 - PB1 domain
PF07714 - Protein tyrosine and serine/threonine kinase

SCOP Domains:
56112 - Protein kinase-like (PK-like)
54277 - CAD & PB1 domains
57889 - Cysteine-rich domain

ModBase Predicted Comparative 3D Structure on Q05513
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0004697 protein kinase C activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0015459 potassium channel regulator activity
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0019901 protein kinase binding
GO:0019904 protein domain specific binding
GO:0043274 phospholipase binding
GO:0043560 insulin receptor substrate binding
GO:0046872 metal ion binding
GO:0071889 14-3-3 protein binding

Biological Process:
GO:0000226 microtubule cytoskeleton organization
GO:0001954 positive regulation of cell-matrix adhesion
GO:0006468 protein phosphorylation
GO:0006954 inflammatory response
GO:0007165 signal transduction
GO:0007166 cell surface receptor signaling pathway
GO:0007179 transforming growth factor beta receptor signaling pathway
GO:0007616 long-term memory
GO:0008284 positive regulation of cell proliferation
GO:0008286 insulin receptor signaling pathway
GO:0016310 phosphorylation
GO:0016477 cell migration
GO:0018105 peptidyl-serine phosphorylation
GO:0030010 establishment of cell polarity
GO:0031333 negative regulation of protein complex assembly
GO:0031532 actin cytoskeleton reorganization
GO:0031584 activation of phospholipase D activity
GO:0032148 activation of protein kinase B activity
GO:0032753 positive regulation of interleukin-4 production
GO:0032869 cellular response to insulin stimulus
GO:0034613 cellular protein localization
GO:0035556 intracellular signal transduction
GO:0043066 negative regulation of apoptotic process
GO:0045630 positive regulation of T-helper 2 cell differentiation
GO:0046326 positive regulation of glucose import
GO:0046627 negative regulation of insulin receptor signaling pathway
GO:0046628 positive regulation of insulin receptor signaling pathway
GO:0047496 vesicle transport along microtubule
GO:0050732 negative regulation of peptidyl-tyrosine phosphorylation
GO:0050806 positive regulation of synaptic transmission
GO:0051092 positive regulation of NF-kappaB transcription factor activity
GO:0051222 positive regulation of protein transport
GO:0051291 protein heterooligomerization
GO:0051346 negative regulation of hydrolase activity
GO:0051899 membrane depolarization
GO:0060081 membrane hyperpolarization
GO:0060291 long-term synaptic potentiation
GO:0070374 positive regulation of ERK1 and ERK2 cascade
GO:0070528 protein kinase C signaling
GO:0072659 protein localization to plasma membrane
GO:1990138 neuron projection extension
GO:2000463 positive regulation of excitatory postsynaptic potential
GO:2000553 positive regulation of T-helper 2 cell cytokine production
GO:2000664 positive regulation of interleukin-5 secretion
GO:2000667 positive regulation of interleukin-13 secretion
GO:2001181 positive regulation of interleukin-10 secretion

Cellular Component:
GO:0005634 nucleus
GO:0005635 nuclear envelope
GO:0005737 cytoplasm
GO:0005768 endosome
GO:0005815 microtubule organizing center
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0005911 cell-cell junction
GO:0005923 bicellular tight junction
GO:0005938 cell cortex
GO:0016020 membrane
GO:0016324 apical plasma membrane
GO:0016363 nuclear matrix
GO:0030054 cell junction
GO:0031252 cell leading edge
GO:0031941 filamentous actin
GO:0031982 vesicle
GO:0032991 macromolecular complex
GO:0035748 myelin sheath abaxonal region
GO:0043203 axon hillock
GO:0043231 intracellular membrane-bounded organelle
GO:0045121 membrane raft
GO:0045179 apical cortex
GO:0048471 perinuclear region of cytoplasm
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  BC014270 - Homo sapiens protein kinase C, zeta, mRNA (cDNA clone MGC:10512 IMAGE:3835020), complete cds.
BC008058 - Homo sapiens protein kinase C, zeta, mRNA (cDNA clone MGC:1669 IMAGE:2987996), complete cds.
AB464093 - Synthetic construct DNA, clone: pF1KB6135, Homo sapiens PRKCZ gene for protein kinase C zeta, without stop codon, in Flexi system.
DQ892929 - Synthetic construct clone IMAGE:100005559; FLH190935.01X; RZPDo839F0776D protein kinase C, zeta (PRKCZ) gene, encodes complete protein.
DQ893922 - Synthetic construct Homo sapiens clone IMAGE:100008382; FLH165717.01L; RZPDo839F11159D protein kinase C, zeta (PRKCZ) gene, encodes complete protein.
DQ896178 - Synthetic construct Homo sapiens clone IMAGE:100010638; FLH190932.01L; RZPDo839F0766D protein kinase C, zeta (PRKCZ) gene, encodes complete protein.
KJ891890 - Synthetic construct Homo sapiens clone ccsbBroadEn_01284 PRKCZ gene, encodes complete protein.
KJ905291 - Synthetic construct Homo sapiens clone ccsbBroadEn_14796 PRKCZ gene, encodes complete protein.
BT007082 - Homo sapiens protein kinase C, zeta mRNA, complete cds.
L14283 - Human protein kinase C zeta mRNA, complete cds.
AK290995 - Homo sapiens cDNA FLJ76797 complete cds, highly similar to Homo sapiens protein kinase C, zeta (PRKCZ), mRNA.
Z15108 - H.sapiens mRNA for protein kinase C zeta.
DD327949 - ATYPICAL PROTEIN KINASE C ISOFORMS IN DISORDERS OF THE NERVOUS SYSTEM AND CANCER.
AK294649 - Homo sapiens cDNA FLJ53316 complete cds, highly similar to Protein kinase C zeta type (EC 2.7.11.13).
AK294782 - Homo sapiens cDNA FLJ54715 complete cds, highly similar to Protein kinase C zeta type (EC 2.7.11.13).
AK097627 - Homo sapiens cDNA FLJ40308 fis, clone TESTI2029264, highly similar to Protein kinase C zeta type (EC 2.7.11.13).
AK302160 - Homo sapiens cDNA FLJ60366 complete cds, highly similar to Protein kinase C zeta type (EC 2.7.11.13).
JD143343 - Sequence 124367 from Patent EP1572962.
JD190608 - Sequence 171632 from Patent EP1572962.
CU675909 - Synthetic construct Homo sapiens gateway clone IMAGE:100017725 5' read PRKCZ mRNA.
AK310372 - Homo sapiens cDNA, FLJ17414.
DQ577590 - Homo sapiens piRNA piR-45702, complete sequence.
AK131526 - Homo sapiens cDNA FLJ16754 fis, clone BRACE2047573, highly similar to Protein kinase C, zeta type (EC 2.7.1.-).
JD259739 - Sequence 240763 from Patent EP1572962.
JD351314 - Sequence 332338 from Patent EP1572962.
JD404916 - Sequence 385940 from Patent EP1572962.
JD140870 - Sequence 121894 from Patent EP1572962.
JD216698 - Sequence 197722 from Patent EP1572962.
JD276286 - Sequence 257310 from Patent EP1572962.
JD445000 - Sequence 426024 from Patent EP1572962.
JD470605 - Sequence 451629 from Patent EP1572962.
JD161141 - Sequence 142165 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_ptdinsPathway - Phosphoinositides and their downstream targets.

Reactome (by CSHL, EBI, and GO)

Protein Q05513 (Reactome details) participates in the following event(s):

R-HSA-437192 PDK1 binds PKC zeta
R-HSA-437195 PDK1 activates PKC zeta
R-HSA-5218821 PDK1 phosphorylates PKC
R-HSA-5218805 PKC autophosphorylates
R-HSA-5218813 DAG and Ca+2 bind to PKC and tether it to membrane
R-HSA-2134506 TGFBR1 is recruited to tight junctions by PARD6A
R-NUL-2161147 TGFBR1 is recruited to tight junction by binding Pard6a
R-HSA-2134519 TGFBR2 is recruited to tight junctions after TGF-beta stimulation
R-HSA-2134532 TGFBR2 phosphorylates TGFBR1 and PARD6A
R-HSA-2160932 SMURF1 binds phosphorylated PARD6A
R-NUL-2161165 TGFBR2 phosphorylates Pard6a
R-NUL-2161160 TGFBR2 is recruited to tight junctions-associated, Pard6a-bound, TGFBR1 after TGF-beta stimulation
R-HSA-5218823 PKC phosphorylates sphingosine kinase 1
R-HSA-2160935 SMURF1 ubiquitinates RHOA
R-HSA-114604 GPVI-mediated activation cascade
R-HSA-5218921 VEGFR2 mediated cell proliferation
R-HSA-76002 Platelet activation, signaling and aggregation
R-HSA-4420097 VEGFA-VEGFR2 Pathway
R-HSA-109582 Hemostasis
R-HSA-2173791 TGF-beta receptor signaling in EMT (epithelial to mesenchymal transition)
R-HSA-194138 Signaling by VEGF
R-HSA-170834 Signaling by TGF-beta Receptor Complex
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-9006936 Signaling by TGF-beta family members
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: A8K4N0, A8MU64, B7Z2J7, E9PCW2, ENST00000378567.1, ENST00000378567.2, ENST00000378567.3, ENST00000378567.4, ENST00000378567.5, ENST00000378567.6, ENST00000378567.7, KPCZ_HUMAN, NM_002744, PKC2, Q05513, Q15207, Q5SYT5, Q969S4, uc318ojl.1, uc318ojl.2
UCSC ID: ENST00000378567.8_5
RefSeq Accession: NM_002744.6
Protein: Q05513 (aka KPCZ_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.