Human Gene PRODH (ENST00000357068.11_10) from GENCODE V47lift37
  Description: proline dehydrogenase 1, transcript variant 1 (from RefSeq NM_016335.6)
Gencode Transcript: ENST00000357068.11_10
Gencode Gene: ENSG00000100033.17_14
Transcript (Including UTRs)
   Position: hg19 chr22:18,900,294-18,923,806 Size: 23,513 Total Exon Count: 14 Strand: -
Coding Region
   Position: hg19 chr22:18,900,688-18,923,800 Size: 23,113 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:18,900,294-18,923,806)mRNA (may differ from genome)Protein (600 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCHuman Cortex Gene ExpressionMalacardsMGIOMIMPubMed
ReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PROD_HUMAN
DESCRIPTION: RecName: Full=Proline dehydrogenase 1, mitochondrial; EC=1.5.99.8; AltName: Full=Proline oxidase; AltName: Full=Proline oxidase 2; AltName: Full=p53-induced gene 6 protein; Flags: Precursor;
FUNCTION: Converts proline to delta-1-pyrroline-5-carboxylate.
CATALYTIC ACTIVITY: L-proline + acceptor = (S)-1-pyrroline-5- carboxylate + reduced acceptor.
COFACTOR: FAD.
PATHWAY: Amino-acid degradation; L-proline degradation into L- glutamate; L-glutamate from L-proline: step 1/2.
SUBCELLULAR LOCATION: Mitochondrion matrix.
TISSUE SPECIFICITY: Expressed in lung, skeletal muscle and brain, to a lesser extent in heart and kidney, and weakly in liver, placenta and pancreas.
INDUCTION: During p53/TP53-induced apoptosis.
DISEASE: Defects in PRODH are the cause of hyperprolinemia type 1 (HP-1) [MIM:239500]. HP-1 is a disorder characterized by elevated serum proline levels. May be involved in the psychiatric and behavioral phenotypes associated with the 22q11 velocardiofacial and DiGeorge syndrome.
DISEASE: Defects in PRODH are associated with susceptibility to schizophrenia type 4 (SCZD4) [MIM:600850]. A complex, multifactorial psychotic disorder or group of disorders characterized by disturbances in the form and content of thought (e.g. delusions, hallucinations), in mood (e.g. inappropriate affect), in sense of self and relationship to the external world (e.g. loss of ego boundaries, withdrawal), and in behavior (e.g bizarre or apparently purposeless behavior). Although it affects emotions, it is distinguished from mood disorders in which such disturbances are primary. Similarly, there may be mild impairment of cognitive function, and it is distinguished from the dementias in which disturbed cognitive function is considered primary. Some patients manifest schizophrenic as well as bipolar disorder symptoms and are often given the diagnosis of schizoaffective disorder.
SIMILARITY: Belongs to the proline oxidase family.
SEQUENCE CAUTION: Sequence=AAC39529.1; Type=Frameshift; Positions=540, 563, 568, 577, 580, 582; Sequence=AAH68260.1; Type=Frameshift; Positions=123; Sequence=AAH94736.1; Type=Frameshift; Positions=40; Sequence=AAH94736.1; Type=Miscellaneous discrepancy; Note=Artifact. Missing internal sequence that doesn't correspond to an exon-intron boundary; Sequence=BAD92709.1; Type=Miscellaneous discrepancy; Note=Intron retention. Includes intronic sequence at the 5' end;
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/PRODH";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PRODH
Diseases sorted by gene-association score: hyperprolinemia, type i* (1697), schizophrenia 4* (1014), hyperprolinemia (61), schizoaffective disorder (29), variola minor (16), schizophrenia (13), childhood-onset schizophrenia (12), psychotic disorder (12), monkeypox (11), primary hyperoxaluria (11), digeorge syndrome (10), bipolar disorder (9), velocardiofacial syndrome (9), contagious pustular dermatitis (6), chromosomal deletion syndrome (2), autism spectrum disorder (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 37.52 RPKM in Skin - Sun Exposed (Lower leg)
Total median expression: 602.66 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -138.02394-0.350 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002872 - Proline_DH
IPR015659 - Proline_oxidase

Pfam Domains:
PF01619 - Proline dehydrogenase

SCOP Domains:
51730 - FAD-linked oxidoreductase

ModBase Predicted Comparative 3D Structure on O43272
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologGenome Browser
Gene DetailsGene Details Gene DetailsGene DetailsGene Details
Gene SorterGene Sorter Gene SorterGene SorterGene Sorter
 RGDEnsembl WormBaseSGD
     Protein Sequence
     Alignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004657 proline dehydrogenase activity
GO:0016491 oxidoreductase activity
GO:0071949 FAD binding

Biological Process:
GO:0006560 proline metabolic process
GO:0006562 proline catabolic process
GO:0008631 intrinsic apoptotic signaling pathway in response to oxidative stress
GO:0010133 proline catabolic process to glutamate
GO:0010942 positive regulation of cell death
GO:0019470 4-hydroxyproline catabolic process
GO:0055114 oxidation-reduction process

Cellular Component:
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0005759 mitochondrial matrix


-  Descriptions from all associated GenBank mRNAs
  AF010310 - Homo sapiens p53 induced protein mRNA, partial cds.
BC068260 - Homo sapiens proline dehydrogenase (oxidase) 1, mRNA (cDNA clone IMAGE:5311991), partial cds.
BC094736 - Homo sapiens proline dehydrogenase (oxidase) 1, mRNA (cDNA clone IMAGE:4792060), partial cds.
BC036534 - Homo sapiens proline dehydrogenase (oxidase) 1, mRNA (cDNA clone IMAGE:5264431).
AK001359 - Homo sapiens cDNA FLJ10497 fis, clone NT2RP2000310, highly similar to Human proline dehydrogenase/proline oxidase mRNA.
AK091063 - Homo sapiens cDNA FLJ33744 fis, clone BRAWH2019198, highly similar to PROLINE OXIDASE, MITOCHONDRIAL PRECURSOR (EC 1.5.3.-).
AX746760 - Sequence 285 from Patent EP1308459.
AF120278 - Homo sapiens proline dehydrogenase mRNA, complete cds.
U82381 - Human proline dehydrogenase/proline oxidase (PRODH) mRNA, complete cds.
AB209472 - Homo sapiens mRNA for Proline oxidase, mitochondrial precursor variant protein.
U79754 - Human proline oxidase 2 (HsPOX2) mRNA, complete cds.
JD456556 - Sequence 437580 from Patent EP1572962.
JD335121 - Sequence 316145 from Patent EP1572962.
JD119786 - Sequence 100810 from Patent EP1572962.
JD475975 - Sequence 456999 from Patent EP1572962.
JD252376 - Sequence 233400 from Patent EP1572962.
JD316407 - Sequence 297431 from Patent EP1572962.
BC118597 - Homo sapiens proline dehydrogenase (oxidase) 1, mRNA (cDNA clone MGC:148078 IMAGE:40108132), complete cds.
BC121809 - Homo sapiens proline dehydrogenase (oxidase) 1, mRNA (cDNA clone MGC:148079 IMAGE:40108133), complete cds.
JD107066 - Sequence 88090 from Patent EP1572962.
JD055029 - Sequence 36053 from Patent EP1572962.
JD185152 - Sequence 166176 from Patent EP1572962.
KJ897385 - Synthetic construct Homo sapiens clone ccsbBroadEn_06779 PRODH gene, encodes complete protein.
KR711908 - Synthetic construct Homo sapiens clone CCSBHm_00031970 PRODH (PRODH) mRNA, encodes complete protein.
KR711909 - Synthetic construct Homo sapiens clone CCSBHm_00031971 PRODH (PRODH) mRNA, encodes complete protein.
KR711910 - Synthetic construct Homo sapiens clone CCSBHm_00031972 PRODH (PRODH) mRNA, encodes complete protein.
KR711911 - Synthetic construct Homo sapiens clone CCSBHm_00031974 PRODH (PRODH) mRNA, encodes complete protein.
KJ534920 - Homo sapiens clone PRODH_iso-A_adult-A12 proline dehydrogenase 1 isoform A (PRODH) mRNA, partial cds, alternatively spliced.
MP074211 - Sequence 8 from Patent WO2018236232.
MP074213 - Sequence 10 from Patent WO2018236232.
MP074210 - Sequence 7 from Patent WO2018236232.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PROUT-PWY - L-proline degradation

Reactome (by CSHL, EBI, and GO)

Protein O43272 (Reactome details) participates in the following event(s):

R-HSA-70670 PRODH oxidises L-Pro to 1PYR-5COOH
R-HSA-70688 Proline catabolism
R-HSA-6788656 Histidine, lysine, phenylalanine, tyrosine, proline and tryptophan catabolism
R-HSA-71291 Metabolism of nitrogenous molecules
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: A6NF53, ENST00000357068.1, ENST00000357068.10, ENST00000357068.2, ENST00000357068.3, ENST00000357068.4, ENST00000357068.5, ENST00000357068.6, ENST00000357068.7, ENST00000357068.8, ENST00000357068.9, NM_016335, O14680, O43272, PIG6, POX2, PRODH , PRODH2 , PROD_HUMAN, Q0P507, Q147W8, Q504W1, Q59FI8, Q6NV86, Q9UF13, uc317zwf.1, uc317zwf.2
UCSC ID: ENST00000357068.11_10
RefSeq Accession: NM_016335.6
Protein: O43272 (aka PROD_HUMAN)

-  Gene Model Information
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-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.