Human Gene PRR9 (ENST00000368744.4_4) from GENCODE V47lift37

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Human Gene PRR9 (ENST00000368744.4_4) from GENCODE V47lift37

Description: proline rich 9 (from RefSeq NM_001195571.2)
Gencode Transcript: ENST00000368744.4_4
Gencode Gene: ENSG00000203783.5_7
Transcript (Including UTRs)
Position: hg19 chr1:153,190,060-153,191,786 Size: 1,727 Total Exon Count: 2 Strand: +
Coding Region
Position: hg19 chr1:153,190,621-153,190,971 Size: 351 Coding Exon Count: 1

Page Index	Sequence and Links	Primers	CTD	Gene Alleles	RNA-Seq Expression
Microarray Expression	RNA Structure	Protein Structure	Other Species	GO Annotations	mRNA Descriptions
Other Names	Model Information	Methods

Data last updated at UCSC: 2024-08-22 23:36:26

Sequence and Links to Tools and Databases

Genomic Sequence (chr1:153,190,060-153,191,786)			mRNA (may differ from genome)		Protein (116 aa)
Gene Sorter	Genome Browser	Other Species FASTA	VisiGene	Gene interactions	Table Schema
AlphaFold	BioGPS	Ensembl	Entrez Gene	ExonPrimer	GeneCards
HGNC	MGI	PubMed	UniProtKB	Wikipedia	BioGrid CRISPR DB

Primer design for this transcript

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3

Comparative Toxicogenomics Database (CTD)


	The following chemicals interact with this gene D015085 2,4,5-Trichlorophenoxyacetic Acid D003300 Copper D015032 Zinc

Common Gene Haplotype Alleles


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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)


	Highest median expression: 3.20 RPKM in Testis Total median expression: 3.92 RPKM View in GTEx track of Genome Browser View at GTEx portal View GTEx Body Map

Microarray Expression Data


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mRNA Secondary Structure of 3' and 5' UTRs

Region	Fold Energy	Bases	Energy/Base	Display As
5' UTR	-11.10	56	-0.198	Picture	PostScript	Text
3' UTR	-231.30	815	-0.284	Picture	PostScript	Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

Protein Domain and Structure Information

InterPro Domains: Graphical view of domain structure
IPR026075 - SPRR/LCE

ModBase Predicted Comparative 3D Structure on Q5T870


Front	Top	Side

The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

Orthologous Genes in Other Species

Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.

Mouse	Rat	Zebrafish	D. melanogaster	C. elegans	S. cerevisiae
No ortholog	No ortholog	No ortholog	No ortholog	No ortholog	No ortholog
Gene Details	Gene Details
Gene Sorter	Gene Sorter
	RGD

Gene Ontology (GO) Annotations with Structured Vocabulary


	Molecular Function: GO:0005198 structural molecule activity Biological Process: GO:0018149 peptide cross-linking GO:0030216 keratinocyte differentiation Cellular Component: GO:0001533 cornified envelope GO:0005737 cytoplasm

Descriptions from all associated GenBank mRNAs


	JD086604 - Sequence 67628 from Patent EP1572962. JD499623 - Sequence 480647 from Patent EP1572962. JD153515 - Sequence 134539 from Patent EP1572962. JD561998 - Sequence 543022 from Patent EP1572962. JD492689 - Sequence 473713 from Patent EP1572962.

Other Names for This Gene


	Alternate Gene Symbols: ENST00000368744.1, ENST00000368744.2, ENST00000368744.3, NM_001195571, PRR9_HUMAN, Q5T870, uc318hal.1, uc318hal.2 UCSC ID: ENST00000368744.4_4 RefSeq Accession: NM_001195571.2 Protein: Q5T870 (aka PRR9_HUMAN)

Gene Model Information


	Click here for a detailed description of the fields of the table above.

Methods, Credits, and Use Restrictions


	Click here for details on how this gene model was made and data restrictions if any.