Human Gene PSAP (ENST00000394936.8_10) from GENCODE V47lift37
  Description: prosaposin, transcript variant 1 (from RefSeq NM_002778.4)
Gencode Transcript: ENST00000394936.8_10
Gencode Gene: ENSG00000197746.15_16
Transcript (Including UTRs)
   Position: hg19 chr10:73,576,055-73,611,008 Size: 34,954 Total Exon Count: 14 Strand: -
Coding Region
   Position: hg19 chr10:73,577,198-73,610,978 Size: 33,781 Coding Exon Count: 14 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:73,576,055-73,611,008)mRNA (may differ from genome)Protein (524 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: SAP_HUMAN
DESCRIPTION: RecName: Full=Proactivator polypeptide; Contains: RecName: Full=Saposin-A; AltName: Full=Protein A; Contains: RecName: Full=Saposin-B-Val; Contains: RecName: Full=Saposin-B; AltName: Full=Cerebroside sulfate activator; Short=CSAct; AltName: Full=Dispersin; AltName: Full=Sphingolipid activator protein 1; Short=SAP-1; AltName: Full=Sulfatide/GM1 activator; Contains: RecName: Full=Saposin-C; AltName: Full=A1 activator; AltName: Full=Co-beta-glucosidase; AltName: Full=Glucosylceramidase activator; AltName: Full=Sphingolipid activator protein 2; Short=SAP-2; Contains: RecName: Full=Saposin-D; AltName: Full=Component C; AltName: Full=Protein C; Flags: Precursor;
FUNCTION: The lysosomal degradation of sphingolipids takes place by the sequential action of specific hydrolases. Some of these enzymes require specific low-molecular mass, non-enzymic proteins: the sphingolipids activator proteins (coproteins).
FUNCTION: Saposin-A and saposin-C stimulate the hydrolysis of glucosylceramide by beta-glucosylceramidase (EC 3.2.1.45) and galactosylceramide by beta-galactosylceramidase (EC 3.2.1.46). Saposin-C apparently acts by combining with the enzyme and acidic lipid to form an activated complex, rather than by solubilizing the substrate.
FUNCTION: Saposin-B stimulates the hydrolysis of galacto- cerebroside sulfate by arylsulfatase A (EC 3.1.6.8), GM1 gangliosides by beta-galactosidase (EC 3.2.1.23) and globotriaosylceramide by alpha-galactosidase A (EC 3.2.1.22). Saposin-B forms a solubilizing complex with the substrates of the sphingolipid hydrolases.
FUNCTION: Saposin-D is a specific sphingomyelin phosphodiesterase activator (EC 3.1.4.12).
SUBUNIT: Saposin-B is a homodimer.
SUBCELLULAR LOCATION: Lysosome.
PTM: This precursor is proteolytically processed to 4 small peptides, which are similar to each other and are sphingolipid hydrolase activator proteins.
PTM: N-linked glycans show a high degree of microheterogeneity.
PTM: The one residue extended Saposin-B-Val is only found in 5% of the chains.
DISEASE: Defects in PSAP are the cause of combined saposin deficiency (CSAPD) [MIM:611721]; also known as prosaposin deficiency. CSAPD is due to absence of all saposins, leading to a fatal storage disorder with hepatosplenomegaly and severe neurological involvement.
DISEASE: Defects in PSAP saposin-B region are the cause of leukodystrophy metachromatic due to saposin-B deficiency (MLD- SAPB) [MIM:249900]. MLD-SAPB is an atypical form of metachromatic leukodystrophy. It is characterized by tissue accumulation of cerebroside-3-sulfate, demyelination, periventricular white matter abnormalities, peripheral neuropathy. Additional neurological features include dysarthria, ataxic gait, psychomotr regression, seizures, cognitive decline and spastic quadriparesis.
DISEASE: Defects in PSAP saposin-C region are the cause of atypical Gaucher disease (AGD) [MIM:610539]. Affected individuals have marked glucosylceramide accumulation in the spleen without having a deficiency of glucosylceramide-beta glucosidase characteristic of classic Gaucher disease, a lysosomal storage disorder.
DISEASE: Defects in PSAP saposin-A region are the cause of atypical Krabbe disease (AKRD) [MIM:611722]. AKRD is a disorder of galactosylceramide metabolism. AKRD features include progressive encephalopathy and abnormal myelination in the cerebral white matter resembling Krabbe disease.
DISEASE: Note=Defects in PSAP saposin-D region are found in a variant of Tay-Sachs disease (GM2-gangliosidosis).
MISCELLANEOUS: Saposin-B co-purifies with 1 molecule of phosphatidylethanolamine.
SIMILARITY: Contains 2 saposin A-type domains.
SIMILARITY: Contains 4 saposin B-type domains.
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org/Genes/PSAPID42980ch10q22.html";
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/PSAP";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PSAP
Diseases sorted by gene-association score: gaucher disease, atypical* (1679), combined sap deficiency* (1350), metachromatic leukodystrophy due to sap-b deficiency* (1300), krabbe disease, atypical* (1019), encephalopathy due to prosaposin deficiency* (400), metachromatic leukodystrophy, late infantile form* (350), infantile krabbe disease* (247), metachromatic leukodystrophy, adult form* (247), metachromatic leukodystrophy, juvenile form* (247), gaucher's disease (57), metachromatic leukodystrophy (49), leukodystrophy (46), sphingolipidosis (35), krabbe disease (31), tay-sachs disease (19), fabry disease (16), gaucher disease, type ii (13), gaucher disease, type iii (13), glycoproteinosis (12), gangliosidosis gm1 (12), mucolipidosis iv (12), niemann-pick disease (12), lipid storage disease (10), farber lipogranulomatosis (9), mucolipidosis ii alpha/beta (9), learning disability (8), adult neuronal ceroid lipofuscinosis (8), gaucher disease, type i (8), glanders (7), niemann-pick disease, type c1 (7), neuronal ceroid-lipofuscinoses (7), inclusion-cell disease (7), neuronal ceroid lipofuscinosis (6), fanconi anemia, complementation group a (5)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 781.31 RPKM in Adrenal Gland
Total median expression: 19332.32 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -7.3030-0.243 Picture PostScript Text
3' UTR -424.401143-0.371 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003119 - SapA
IPR007856 - SapB_1
IPR008138 - SapB_2
IPR008373 - Saposin
IPR011001 - Saposin-like
IPR021165 - Saposin_chordata
IPR008139 - SaposinB

Pfam Domains:
PF02199 - Saposin A-type domain
PF03489 - Saposin-like type B, region 2
PF05184 - Saposin-like type B, region 1

SCOP Domains:
48371 - ARM repeat
47862 - Saposin
57652 - HIPIP (high potential iron protein)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1M12 - NMR MuPIT 1N69 - X-ray MuPIT 1SN6 - NMR MuPIT 2DOB - X-ray MuPIT 2GTG - X-ray MuPIT 2QYP - X-ray MuPIT 2R0R - X-ray MuPIT 2R1Q - X-ray MuPIT 2RB3 - X-ray MuPIT 2Z9A - X-ray MuPIT 3BQP - X-ray MuPIT 3BQQ - X-ray MuPIT 4DDJ - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P07602
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001664 G-protein coupled receptor binding
GO:0004565 beta-galactosidase activity
GO:0005515 protein binding
GO:0005543 phospholipid binding
GO:0008047 enzyme activator activity
GO:0008289 lipid binding
GO:0042802 identical protein binding
GO:0042803 protein homodimerization activity
GO:1905573 ganglioside GM1 binding
GO:1905574 ganglioside GM2 binding
GO:1905575 ganglioside GM3 binding
GO:1905576 ganglioside GT1b binding
GO:1905577 ganglioside GP1c binding

Biological Process:
GO:0002576 platelet degranulation
GO:0006629 lipid metabolic process
GO:0006665 sphingolipid metabolic process
GO:0006687 glycosphingolipid metabolic process
GO:0006869 lipid transport
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007193 adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway
GO:0010506 regulation of autophagy
GO:0019216 regulation of lipid metabolic process
GO:0043085 positive regulation of catalytic activity
GO:0043312 neutrophil degranulation
GO:0043408 regulation of MAPK cascade
GO:0043410 positive regulation of MAPK cascade
GO:0048589 developmental growth
GO:0060736 prostate gland growth
GO:0060742 epithelial cell differentiation involved in prostate gland development
GO:0071310 cellular response to organic substance
GO:1903206 negative regulation of hydrogen peroxide-induced cell death
GO:1905572 ganglioside GM1 transport to membrane

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005764 lysosome
GO:0005765 lysosomal membrane
GO:0005886 plasma membrane
GO:0016021 integral component of membrane
GO:0031012 extracellular matrix
GO:0035577 azurophil granule membrane
GO:0043202 lysosomal lumen
GO:0043231 intracellular membrane-bounded organelle
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  BC001503 - Homo sapiens prosaposin, mRNA (cDNA clone MGC:2254 IMAGE:3508263), complete cds.
BC004275 - Homo sapiens prosaposin, mRNA (cDNA clone MGC:10834 IMAGE:3615413), complete cds.
BC007612 - Homo sapiens prosaposin, mRNA (cDNA clone MGC:15695 IMAGE:3351606), complete cds.
BC091483 - Homo sapiens prosaposin, mRNA (cDNA clone IMAGE:6186106), complete cds.
LF384637 - JP 2014500723-A/192140: Polycomb-Associated Non-Coding RNAs.
M60255 - Human mutant cerebroside sulfate activator protein (SAP-MU-9) mRNA, complete cds.
M60257 - Human mutant cerebroside sulfate activator protein (SAP-MU-0) mRNA, complete cds, without the 9 bp insertion found in alternatively spliced mRNA.
M60258 - Human mutant cerebroside sulfate activator protein (SAP-MU-6) mRNA, complete cds and with a 6 bp insertion.
J03015 - Homo sapiens sphingolipid activator protein 1 mRNA, 3' end.
D00422 - Homo sapiens mRNA for sphingolipid activator proteins, complete cds.
M81355 - Homo sapiens sphingolipid activator proteins 1 and 2 processed mutant mRNA, complete cds.
AK057878 - Homo sapiens cDNA FLJ25149 fis, clone CBR07687, highly similar to PROACTIVATOR POLYPEPTIDE PRECURSOR.
LF208757 - JP 2014500723-A/16260: Polycomb-Associated Non-Coding RNAs.
J03077 - Human co-beta glucosidase (proactivator) mRNA, complete cds.
JD299061 - Sequence 280085 from Patent EP1572962.
JD497267 - Sequence 478291 from Patent EP1572962.
JD449555 - Sequence 430579 from Patent EP1572962.
JD274353 - Sequence 255377 from Patent EP1572962.
AK129790 - Homo sapiens cDNA FLJ26279 fis, clone DMC06755, highly similar to Proactivator polypeptide precursor.
JD193758 - Sequence 174782 from Patent EP1572962.
JD514218 - Sequence 495242 from Patent EP1572962.
JD422741 - Sequence 403765 from Patent EP1572962.
JD536941 - Sequence 517965 from Patent EP1572962.
JD220530 - Sequence 201554 from Patent EP1572962.
M32221 - Human saposin proteins A-D mRNA, complete cds.
LF322539 - JP 2014500723-A/130042: Polycomb-Associated Non-Coding RNAs.
JD202470 - Sequence 183494 from Patent EP1572962.
JD202107 - Sequence 183131 from Patent EP1572962.
AK307721 - Homo sapiens cDNA, FLJ97669.
AK223290 - Homo sapiens mRNA for prosaposin (variant Gaucher disease and variant metachromatic leukodystrophy) variant, clone: SYN03435.
JD060420 - Sequence 41444 from Patent EP1572962.
AB209776 - Homo sapiens mRNA for prosaposin variant protein.
AK293672 - Homo sapiens cDNA FLJ54596 complete cds, highly similar to Proactivator polypeptide precursor.
JD130645 - Sequence 111669 from Patent EP1572962.
JD027098 - Sequence 8122 from Patent EP1572962.
JD032097 - Sequence 13121 from Patent EP1572962.
AK299184 - Homo sapiens cDNA FLJ54136 complete cds, highly similar to Proactivator polypeptide precursor.
LF322538 - JP 2014500723-A/130041: Polycomb-Associated Non-Coding RNAs.
LF322537 - JP 2014500723-A/130040: Polycomb-Associated Non-Coding RNAs.
DQ893009 - Synthetic construct clone IMAGE:100005639; FLH191638.01X; RZPDo839F0577D prosaposin (variant Gaucher disease and variant metachromatic leukodystrophy) (PSAP) gene, encodes complete protein.
DQ896255 - Synthetic construct Homo sapiens clone IMAGE:100010715; FLH191634.01L; RZPDo839F0567D prosaposin (variant Gaucher disease and variant metachromatic leukodystrophy) (PSAP) gene, encodes complete protein.
BT006849 - Homo sapiens prosaposin (variant Gaucher disease and variant metachromatic leukodystrophy) mRNA, complete cds.
AB527305 - Synthetic construct DNA, clone: pF1KB5209, Homo sapiens PSAP gene for prosaposin, without stop codon, in Flexi system.
CR456746 - Homo sapiens full open reading frame cDNA clone RZPDo834F1114D for gene PSAP, prosaposin (variant Gaucher disease and variant metachromatic leukodystrophy); complete cds, incl. stopcodon.
LF322536 - JP 2014500723-A/130039: Polycomb-Associated Non-Coding RNAs.
DQ587608 - Homo sapiens piRNA piR-54720, complete sequence.
LF322535 - JP 2014500723-A/130038: Polycomb-Associated Non-Coding RNAs.
JD026796 - Sequence 7820 from Patent EP1572962.
LF322534 - JP 2014500723-A/130037: Polycomb-Associated Non-Coding RNAs.
LF322533 - JP 2014500723-A/130036: Polycomb-Associated Non-Coding RNAs.
LF322532 - JP 2014500723-A/130035: Polycomb-Associated Non-Coding RNAs.
LF322531 - JP 2014500723-A/130034: Polycomb-Associated Non-Coding RNAs.
M12710 - Human sphingolipid activator protein mRNA.
LF322529 - JP 2014500723-A/130032: Polycomb-Associated Non-Coding RNAs.
JD023881 - Sequence 4905 from Patent EP1572962.
JD036043 - Sequence 17067 from Patent EP1572962.
CU678650 - Synthetic construct Homo sapiens gateway clone IMAGE:100020277 5' read PSAP mRNA.
LF322528 - JP 2014500723-A/130031: Polycomb-Associated Non-Coding RNAs.
LF322527 - JP 2014500723-A/130030: Polycomb-Associated Non-Coding RNAs.
JD023660 - Sequence 4684 from Patent EP1572962.
JD029649 - Sequence 10673 from Patent EP1572962.
LF322525 - JP 2014500723-A/130028: Polycomb-Associated Non-Coding RNAs.
JD025401 - Sequence 6425 from Patent EP1572962.
JD032050 - Sequence 13074 from Patent EP1572962.
LF322524 - JP 2014500723-A/130027: Polycomb-Associated Non-Coding RNAs.
LF322523 - JP 2014500723-A/130026: Polycomb-Associated Non-Coding RNAs.
MA620214 - JP 2018138019-A/192140: Polycomb-Associated Non-Coding RNAs.
MA558116 - JP 2018138019-A/130042: Polycomb-Associated Non-Coding RNAs.
MA558115 - JP 2018138019-A/130041: Polycomb-Associated Non-Coding RNAs.
MA558114 - JP 2018138019-A/130040: Polycomb-Associated Non-Coding RNAs.
MA558113 - JP 2018138019-A/130039: Polycomb-Associated Non-Coding RNAs.
MA558112 - JP 2018138019-A/130038: Polycomb-Associated Non-Coding RNAs.
MA558111 - JP 2018138019-A/130037: Polycomb-Associated Non-Coding RNAs.
MA558110 - JP 2018138019-A/130036: Polycomb-Associated Non-Coding RNAs.
MA558109 - JP 2018138019-A/130035: Polycomb-Associated Non-Coding RNAs.
MA558108 - JP 2018138019-A/130034: Polycomb-Associated Non-Coding RNAs.
MA558106 - JP 2018138019-A/130032: Polycomb-Associated Non-Coding RNAs.
MA558105 - JP 2018138019-A/130031: Polycomb-Associated Non-Coding RNAs.
MA558104 - JP 2018138019-A/130030: Polycomb-Associated Non-Coding RNAs.
MA558102 - JP 2018138019-A/130028: Polycomb-Associated Non-Coding RNAs.
MA558101 - JP 2018138019-A/130027: Polycomb-Associated Non-Coding RNAs.
MA558100 - JP 2018138019-A/130026: Polycomb-Associated Non-Coding RNAs.
MA444334 - JP 2018138019-A/16260: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P07602 (Reactome details) participates in the following event(s):

R-HSA-351341 Exocytosis of Proactivator polypeptide
R-HSA-5336182 GPR37 binds prosaptide
R-HSA-5336184 GPR37L binds prosaposin
R-HSA-6798739 Exocytosis of azurophil granule membrane proteins
R-HSA-1605591 Glucosylceramidase cleaves the glucosidic bond of glucocerebroside to form ceramide
R-HSA-749454 The Ligand:GPCR:Gi complex dissociates
R-HSA-749456 Liganded Gi-activating GPCRs bind inactive heterotrimeric G-protein Gi
R-HSA-380073 Liganded Gi-activating GPCR acts as a GEF for Gi
R-HSA-114608 Platelet degranulation
R-HSA-375276 Peptide ligand-binding receptors
R-HSA-6798695 Neutrophil degranulation
R-HSA-76005 Response to elevated platelet cytosolic Ca2+
R-HSA-1660662 Glycosphingolipid metabolism
R-HSA-418594 G alpha (i) signalling events
R-HSA-373076 Class A/1 (Rhodopsin-like receptors)
R-HSA-168249 Innate Immune System
R-HSA-76002 Platelet activation, signaling and aggregation
R-HSA-428157 Sphingolipid metabolism
R-HSA-388396 GPCR downstream signalling
R-HSA-500792 GPCR ligand binding
R-HSA-168256 Immune System
R-HSA-109582 Hemostasis
R-HSA-556833 Metabolism of lipids
R-HSA-372790 Signaling by GPCR
R-HSA-1430728 Metabolism
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000394936.1, ENST00000394936.2, ENST00000394936.3, ENST00000394936.4, ENST00000394936.5, ENST00000394936.6, ENST00000394936.7, GLBA, NM_002778, P07292, P07602, P15793, P78538, P78541, P78546, P78547, P78558, Q53Y86, Q6IBQ6, Q92739, Q92740, Q92741, Q92742, SAP1, SAP_HUMAN, uc318xam.1, uc318xam.2
UCSC ID: ENST00000394936.8_10
RefSeq Accession: NM_002778.4
Protein: P07602 (aka SAP_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.