Human Gene PYCARD (ENST00000247470.10_8) from GENCODE V47lift37
  Description: PYD and CARD domain containing, transcript variant 1 (from RefSeq NM_013258.5)
Gencode Transcript: ENST00000247470.10_8
Gencode Gene: ENSG00000103490.14_11
Transcript (Including UTRs)
   Position: hg19 chr16:31,212,807-31,214,081 Size: 1,275 Total Exon Count: 3 Strand: -
Coding Region
   Position: hg19 chr16:31,212,906-31,214,011 Size: 1,106 Coding Exon Count: 3 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:31,212,807-31,214,081)mRNA (may differ from genome)Protein (195 aa)
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-  Comments and Description Text from UniProtKB
  ID: ASC_HUMAN
DESCRIPTION: RecName: Full=Apoptosis-associated speck-like protein containing a CARD; Short=hASC; AltName: Full=Caspase recruitment domain-containing protein 5; AltName: Full=PYD and CARD domain-containing protein; AltName: Full=Target of methylation-induced silencing 1;
FUNCTION: Functions as key mediator in apoptosis and inflammation. Promotes caspase-mediated apoptosis involving predominantly caspase-8 and also caspase-9 in a probable cell type-specific manner. Involved in activation of the mitochondrial apoptotic pathway, promotes caspase-8-dependent proteolytic maturation of BID independently of FADD in certain cell types and also mediates mitochondrial translocation of BAX and activates BAX-dependent apoptosis coupled to activation of caspase-9, -2 and -3. Involved in macrophage pyroptosis, a caspase-1-dependent inflammatory form of cell death and is the major constituent of the ASC pyroptosome which forms upon potassium depletion and rapidly recruits and activates caspase-1. In innate immune response believed to act as an integral adapter in the assembly of the inflammasome which activates caspase-1 leading to processing and secretion of proinflammatory cytokines. The function as activating adapter in different types of inflammasomes is mediated by the DAPIN and CARD domains and their homotypic interactions. Required for recruitment of caspase-1 to inflammasomes containing certain pattern recognition receptors, such as NLRP2, NLRP3, AIM2 and probably IFI16. In the NLRP1 and NLRC4 inflammasomes seems not be required but facilitates the processing of procaspase-1. In cooperation with NOD2 involved in an inflammasome activated by bacterial muramyl dipeptide leading to caspase-1 activation. May be involved in DDX58-triggered proinflammatory responses and inflammasome activation. Isoform 2 may have a regulating effect on the function as inflammasome adapter. Isoform 3 seems to inhibit inflammasome- mediated maturation of interleukin-1 beta. In collaboration with AIM2 which detects cytosolic double-stranded DNA may also be involved in a caspase-1-independent cell death that involves caspase-8. In adaptive immunity may be involved in maturation of dendritic cells to stimulate T cell immunity and in cytoskeletal rearrangements coupled to chemotaxis and antigen uptake may be involved in post-transcriptional regulation of the guanine nucleotide exchange factor DOCK2; the latter function is proposed to involve the nuclear form. Also involved in transcriptional activation of cytokines and chemokines independent of the inflammasome; this function may involve AP-1, NF-kappa-B, MAPK and caspase-8 signaling pathways. For regulation of NF-kappa-B activating and inhibiting functions have been reported. Modulates NF-kappa-B induction at the level of the IKK complex by inhibiting kinase activity of CHUK and IKBK. Proposed to compete with RIPK2 for association with CASP1 thereby down-regulating CASP1-mediated RIPK2-dependent NF-kappa-B activation and activating interleukin-1 beta processing.
SUBUNIT: Self-associates; enforced oligomerization induces apoptosis, NF-kappa-B regulation and interleukin-1 beta seceretion. Homooligomers can form disk-like particles of approximately 12 nm diameter and approximately 1 nm height. Next to isorm 1 also isoform 2 and isoform 3 may be involved in oligomerization leading to functional regulation. Component of several inflammasomes containing one pattern recognition receptor/sensor, such as NLRP1, NLRP2, NLRP3, AIM2, MEFV or NOD2, and probably NLRC4, NLRP12 or IFI16. Major component of the ASC pyroptosome, a 1-2 um supramolecular assembly (one per macrophage cell) which consists of oligomerized PYCARD dimers and CASP1. Interacts with CASP1 (precursor form); the interaction induces activation of CASP1 leading to the processing of interleukin-1 beta; PYCARD competes with RIPK2 for binding to CASP1. Interacts with NLRP3; the interaction requires the homooligomerization of NLRP3. Interacts with NLRP2, NLRC4, MEFV, CARD16, AIM2, IFI16, NOD2, DDX58, RIPK2, PYDC1, PYDC2, NLRP10, CASP8, CHUK, IKBKB and BAX.
INTERACTION: O14862:AIM2; NbExp=4; IntAct=EBI-751215, EBI-6253193; Q07812:BAX; NbExp=7; IntAct=EBI-751215, EBI-516580; Q9C000:NLRP1; NbExp=5; IntAct=EBI-751215, EBI-1220518; Q96P20:NLRP3; NbExp=4; IntAct=EBI-751215, EBI-6253230;
SUBCELLULAR LOCATION: Cytoplasm. Endoplasmic reticulum. Mitochondrion. Nucleus. Note=Upstream of caspase activation, a redistribution from the cytoplasm to the aggregates occurs. These appear as hollow, perinuclear spherical, ball-like structures. Upon NLRP3 inflammasome activation redistributes to the perinuclear space localizing to endoplasmic reticulum and mitochondria. Localized primarily to the nucleus in resting monocytes/macrophages and rapidly redistributed to the cytoplasm upon pathogen infection. Localized to large cytoplasmic aggregate appearing as a speck containing AIM2, PYCARD, CASP8 and bacterial DNA after infection with Francisella tularensis (By similarity).
TISSUE SPECIFICITY: Widely expressed at low levels. Detected in peripheral blood leukocytes, lung, small intestine, spleen, thymus, colon and at lower levels in placenta, liver and kidney. Very low expression in skeletal muscle, heart and brain. Detected in the leukemia cell lines HL-60 and U-937, but not in Jurkat T- cell lymphoma and Daudi Burkitt's lymphoma. Detected in the melanoma cell line WM35, but not in WM793. Not detected in HeLa cervical carcinoma cells and MOLT-4 lymphocytic leukemia cells.
DOMAIN: The DAPIN domain mediates homotypic interactions with DAPIN domains of proteins such as of NLRP3, PYDC1 and AIM2 (PubMed:11786556, PubMed:12656673, PubMed:19158676 and PubMed:19158675).
DOMAIN: The CARD domain mediates interaction with CASP1 and NLRC4 (PubMed:14634131 and PubMed:11967258).
PTM: Phosphorylated.
MISCELLANEOUS: In breast tumorigenesis, methylation-mediated silencing may affect genes and proteins that act as positive mediators of cell death.
SIMILARITY: Contains 1 CARD domain.
SIMILARITY: Contains 1 DAPIN domain.
SEQUENCE CAUTION: Sequence=BAA91012.1; Type=Frameshift; Positions=4;

-  Primer design for this transcript
 

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-  MalaCards Disease Associations
  MalaCards Gene Search: PYCARD
Diseases sorted by gene-association score: chronic recurrent multifocal osteomyelitis (8), cinca syndrome (8), human monocytic ehrlichiosis (5)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D001564 Benzo(a)pyrene
  • D013749 Tetrachlorodibenzodioxin
  • D002784 Cholesterol
  • D004997 Ethinyl Estradiol
  • C070046 1,2-dioleoyloxy-3-(trimethylammonium)propane
  • D015632 1-Methyl-4-phenyl-1,2,3,6-tetrahydropyridine
  • C504897 12-(3-adamantan-1-ylureido)dodecanoic acid
  • C532162 2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidine
  • C035207 4-amino-2,6-dinitrotoluene
  • D000082 Acetaminophen
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 83.63 RPKM in Whole Blood
Total median expression: 679.35 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -32.6070-0.466 Picture PostScript Text
3' UTR -9.2099-0.093 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001315 - CARD
IPR004020 - DAPIN
IPR011029 - DEATH-like
IPR002398 - Pept_C14_p45

Pfam Domains:
PF00619 - Caspase recruitment domain
PF02758 - PAAD/DAPIN/Pyrin domain

SCOP Domains:
47986 - DEATH domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1UCP - NMR MuPIT 2KN6 - NMR MuPIT


ModBase Predicted Comparative 3D Structure on Q9ULZ3
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0002020 protease binding
GO:0005138 interleukin-6 receptor binding
GO:0005515 protein binding
GO:0005523 tropomyosin binding
GO:0008656 cysteine-type endopeptidase activator activity involved in apoptotic process
GO:0017024 myosin I binding
GO:0019899 enzyme binding
GO:0032090 Pyrin domain binding
GO:0042802 identical protein binding
GO:0042803 protein homodimerization activity
GO:0070700 BMP receptor binding
GO:0097153 cysteine-type endopeptidase activity involved in apoptotic process

Biological Process:
GO:0001773 myeloid dendritic cell activation
GO:0002218 activation of innate immune response
GO:0002277 myeloid dendritic cell activation involved in immune response
GO:0002376 immune system process
GO:0002588 positive regulation of antigen processing and presentation of peptide antigen via MHC class II
GO:0002821 positive regulation of adaptive immune response
GO:0006915 apoptotic process
GO:0006919 activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0006954 inflammatory response
GO:0007165 signal transduction
GO:0010803 regulation of tumor necrosis factor-mediated signaling pathway
GO:0030838 positive regulation of actin filament polymerization
GO:0031647 regulation of protein stability
GO:0032088 negative regulation of NF-kappaB transcription factor activity
GO:0032688 negative regulation of interferon-beta production
GO:0032729 positive regulation of interferon-gamma production
GO:0032755 positive regulation of interleukin-6 production
GO:0032760 positive regulation of tumor necrosis factor production
GO:0033209 tumor necrosis factor-mediated signaling pathway
GO:0042104 positive regulation of activated T cell proliferation
GO:0042771 intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:0042981 regulation of apoptotic process
GO:0043065 positive regulation of apoptotic process
GO:0043124 negative regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043312 neutrophil degranulation
GO:0044351 macropinocytosis
GO:0045087 innate immune response
GO:0046330 positive regulation of JNK cascade
GO:0050718 positive regulation of interleukin-1 beta secretion
GO:0050766 positive regulation of phagocytosis
GO:0050829 defense response to Gram-negative bacterium
GO:0050870 positive regulation of T cell activation
GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity
GO:0051092 positive regulation of NF-kappaB transcription factor activity
GO:0051607 defense response to virus
GO:0070374 positive regulation of ERK1 and ERK2 cascade
GO:0071222 cellular response to lipopolysaccharide
GO:0071347 cellular response to interleukin-1
GO:0071356 cellular response to tumor necrosis factor
GO:0071901 negative regulation of protein serine/threonine kinase activity
GO:0072332 intrinsic apoptotic signaling pathway by p53 class mediator
GO:0090197 positive regulation of chemokine secretion
GO:0090200 positive regulation of release of cytochrome c from mitochondria
GO:2000406 positive regulation of T cell migration
GO:2000484 positive regulation of interleukin-8 secretion
GO:2000778 positive regulation of interleukin-6 secretion
GO:2001056 positive regulation of cysteine-type endopeptidase activity
GO:2001181 positive regulation of interleukin-10 secretion
GO:2001238 positive regulation of extrinsic apoptotic signaling pathway
GO:2001242 regulation of intrinsic apoptotic signaling pathway

Cellular Component:
GO:0005576 extracellular region
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005783 endoplasmic reticulum
GO:0005829 cytosol
GO:0008385 IkappaB kinase complex
GO:0034774 secretory granule lumen
GO:0035578 azurophil granule lumen
GO:0072558 NLRP1 inflammasome complex
GO:0072559 NLRP3 inflammasome complex
GO:0097169 AIM2 inflammasome complex


-  Descriptions from all associated GenBank mRNAs
  BC013569 - Homo sapiens PYD and CARD domain containing, mRNA (cDNA clone IMAGE:3902319), partial cds.
AF310103 - Homo sapiens PYCARD mRNA, complete cds.
AK000211 - Homo sapiens cDNA FLJ20204 fis, clone COLF1505.
AF384665 - Homo sapiens caspase recruitment domain protein 5 mRNA, complete cds.
AF184073 - Homo sapiens target of methylation-induced silencing 1 (TMS1) mRNA, complete cds.
AF255794 - Homo sapiens target of methylation-induced silencing-1 (TMS1) mRNA, complete cds, alternatively spliced.
AB023416 - Homo sapiens ASC mRNA for apoptosis-associated speck-like protein containing a CARD, complete cds.
LF384302 - JP 2014500723-A/191805: Polycomb-Associated Non-Coding RNAs.
BC004470 - Homo sapiens PYD and CARD domain containing, mRNA (cDNA clone MGC:10332 IMAGE:3678925), complete cds.
AK314422 - Homo sapiens cDNA, FLJ95208, highly similar to Homo sapiens PYD and CARD domain containing (PYCARD), transcript variant 1, mRNA.
JF432570 - Synthetic construct Homo sapiens clone IMAGE:100073804 PYD and CARD domain containing (PYCARD) gene, encodes complete protein.
KJ902505 - Synthetic construct Homo sapiens clone ccsbBroadEn_11899 PYCARD gene, encodes complete protein.
AB464112 - Synthetic construct DNA, clone: pF1KB6862, Homo sapiens PYCARD gene for PYD and CARD domain containing, without stop codon, in Flexi system.
LF370069 - JP 2014500723-A/177572: Polycomb-Associated Non-Coding RNAs.
LF370071 - JP 2014500723-A/177574: Polycomb-Associated Non-Coding RNAs.
MA619879 - JP 2018138019-A/191805: Polycomb-Associated Non-Coding RNAs.
MA605646 - JP 2018138019-A/177572: Polycomb-Associated Non-Coding RNAs.
MA605648 - JP 2018138019-A/177574: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9ULZ3 (Reactome details) participates in the following event(s):

R-HSA-844610 ASC is recruited via a PYD-PYD interaction
R-HSA-844620 dsDNA:AIM2 clusters bind ASC
R-HSA-877361 Pyrin binds ASC
R-HSA-5660662 ASC binds Caspase-8 complex
R-HSA-844618 dsDNA:AIM2:ASC cluster binds procaspase-1
R-HSA-844612 The CARD domain of ASC recruits Procaspase-1
R-HSA-6798751 Exocytosis of azurophil granule lumen proteins
R-HSA-6798748 Exocytosis of secretory granule lumen proteins
R-HSA-5660663 Caspase-8 cleaves IL1B precursor
R-HSA-844456 The NLRP3 inflammasome
R-HSA-844615 The AIM2 inflammasome
R-HSA-5660668 CLEC7A/inflammasome pathway
R-HSA-622312 Inflammasomes
R-HSA-5607764 CLEC7A (Dectin-1) signaling
R-HSA-6798695 Neutrophil degranulation
R-HSA-168643 Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways
R-HSA-5621481 C-type lectin receptors (CLRs)
R-HSA-168249 Innate Immune System
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: ASC , ASC_HUMAN, CARD5 , ENST00000247470.1, ENST00000247470.2, ENST00000247470.3, ENST00000247470.4, ENST00000247470.5, ENST00000247470.6, ENST00000247470.7, ENST00000247470.8, ENST00000247470.9, NM_013258, PYCARD , Q96D12, Q9BSZ5, Q9HBD0, Q9NXJ8, Q9ULZ3, TMS1 , uc317evs.1, uc317evs.2
UCSC ID: ENST00000247470.10_8
RefSeq Accession: NM_013258.5
Protein: Q9ULZ3 (aka ASC_HUMAN)

-  Gene Model Information
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-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.