Human Gene R3HDM1 (ENST00000683871.1_5) from GENCODE V47lift37
  Description: R3H domain containing 1, transcript variant 7 (from RefSeq NM_001378107.1)
Gencode Transcript: ENST00000683871.1_5
Gencode Gene: ENSG00000048991.18_16
Transcript (Including UTRs)
   Position: hg19 chr2:136,289,054-136,482,839 Size: 193,786 Total Exon Count: 27 Strand: +
Coding Region
   Position: hg19 chr2:136,362,416-136,481,862 Size: 119,447 Coding Exon Count: 25 

Page IndexSequence and LinksPrimersCTDGene AllelesMicroarray Expression
RNA StructureOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:136,289,054-136,482,839)mRNA (may differ from genome)Protein (1134 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIPubMedUniProtKBBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -121.60399-0.305 Picture PostScript Text
3' UTR -227.60977-0.233 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
 RGD    
      
      

-  Descriptions from all associated GenBank mRNAs
  KJ904695 - Synthetic construct Homo sapiens clone ccsbBroadEn_14089 R3HDM1 gene, encodes complete protein.
BC001217 - Homo sapiens R3H domain containing 1, mRNA (cDNA clone IMAGE:3356812), complete cds.
D21852 - Homo sapiens KIAA0029 mRNA.
BC041093 - Homo sapiens R3H domain containing 1, mRNA (cDNA clone MGC:46099 IMAGE:5556247), complete cds.
LF383640 - JP 2014500723-A/191143: Polycomb-Associated Non-Coding RNAs.
MA619217 - JP 2018138019-A/191143: Polycomb-Associated Non-Coding RNAs.
AK127793 - Homo sapiens cDNA FLJ45894 fis, clone OCBBF3023913, highly similar to R3H domain-containing protein 1.
AK290015 - Homo sapiens cDNA FLJ77529 complete cds, highly similar to Homo sapiens R3H domain containing 1 (R3HDM1), mRNA.
AB385267 - Synthetic construct DNA, clone: pF1KA0029, Homo sapiens R3HDM1 gene for R3H domain-containing protein 1, complete cds, without stop codon, in Flexi system.
AK297000 - Homo sapiens cDNA FLJ58151 complete cds, moderately similar to R3H domain-containing protein 1.
AK026987 - Homo sapiens cDNA: FLJ23334 fis, clone HEP12815.
JD389876 - Sequence 370900 from Patent EP1572962.
JD395311 - Sequence 376335 from Patent EP1572962.
JD277037 - Sequence 258061 from Patent EP1572962.
JD156907 - Sequence 137931 from Patent EP1572962.
JD279511 - Sequence 260535 from Patent EP1572962.
JD101210 - Sequence 82234 from Patent EP1572962.
LF319402 - JP 2014500723-A/126905: Polycomb-Associated Non-Coding RNAs.
LF319403 - JP 2014500723-A/126906: Polycomb-Associated Non-Coding RNAs.
LF319412 - JP 2014500723-A/126915: Polycomb-Associated Non-Coding RNAs.
LF319421 - JP 2014500723-A/126924: Polycomb-Associated Non-Coding RNAs.
LF319426 - JP 2014500723-A/126929: Polycomb-Associated Non-Coding RNAs.
MA554979 - JP 2018138019-A/126905: Polycomb-Associated Non-Coding RNAs.
MA554980 - JP 2018138019-A/126906: Polycomb-Associated Non-Coding RNAs.
MA554989 - JP 2018138019-A/126915: Polycomb-Associated Non-Coding RNAs.
MA554998 - JP 2018138019-A/126924: Polycomb-Associated Non-Coding RNAs.
MA555003 - JP 2018138019-A/126929: Polycomb-Associated Non-Coding RNAs.
LF319428 - JP 2014500723-A/126931: Polycomb-Associated Non-Coding RNAs.
JD378673 - Sequence 359697 from Patent EP1572962.
JD091606 - Sequence 72630 from Patent EP1572962.
JD292476 - Sequence 273500 from Patent EP1572962.
LF319429 - JP 2014500723-A/126932: Polycomb-Associated Non-Coding RNAs.
JD236512 - Sequence 217536 from Patent EP1572962.
LF319430 - JP 2014500723-A/126933: Polycomb-Associated Non-Coding RNAs.
JD492153 - Sequence 473177 from Patent EP1572962.
JD246395 - Sequence 227419 from Patent EP1572962.
JD168323 - Sequence 149347 from Patent EP1572962.
JD288670 - Sequence 269694 from Patent EP1572962.
JD020916 - Sequence 1940 from Patent EP1572962.
JD029262 - Sequence 10286 from Patent EP1572962.
MA555005 - JP 2018138019-A/126931: Polycomb-Associated Non-Coding RNAs.
MA555006 - JP 2018138019-A/126932: Polycomb-Associated Non-Coding RNAs.
MA555007 - JP 2018138019-A/126933: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A804HIA8, A0A804HIA8_HUMAN, NM_001378107, R3HDM1 , uc330map.1, uc330map.2
UCSC ID: ENST00000683871.1_5
RefSeq Accession: NM_001378107.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.