Human Gene RAB35 (ENST00000229340.10_7) from GENCODE V47lift37
  Description: RAB35, member RAS oncogene family, transcript variant 1 (from RefSeq NM_006861.7)
Gencode Transcript: ENST00000229340.10_7
Gencode Gene: ENSG00000111737.12_11
Transcript (Including UTRs)
   Position: hg19 chr12:120,532,903-120,554,557 Size: 21,655 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg19 chr12:120,535,049-120,554,454 Size: 19,406 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:120,532,903-120,554,557)mRNA (may differ from genome)Protein (201 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: RAB35_HUMAN
DESCRIPTION: RecName: Full=Ras-related protein Rab-35; AltName: Full=GTP-binding protein RAY; AltName: Full=Ras-related protein Rab-1C;
FUNCTION: In the process of endocytosis, essential rate-limiting regulator of a fast recycling pathway back to the plasma membrane. During cytokinesis, required for the postfurrowing terminal steps, namely for intercellular bridge stability and abscission, possibly by controlling phosphatidylinositol 4,5-bis phosphate (PIP2) and SEPT2 localization at the intercellular bridge.
SUBUNIT: Interacts with DENND1A and DENND1B in a nucleotide- dependent manner. The low binding to DENND1C is nucleotide- independent. All 3 DENND1 act as GEFs for RAB35 and thus activate the protein.
SUBCELLULAR LOCATION: Cell membrane; Lipid-anchor; Cytoplasmic side (Potential). Membrane, clathrin-coated pit. Cytoplasmic vesicle, clathrin-coated vesicle. Endosome. Melanosome. Note=Present on sorting endosomes and endosomal tubules. Tends to be enriched in PIP2-positive cell membrane domains. During mitosis, associated with the plasma membrane and present at the ingressing furrow during early cytokinesis as well as at the intercellular bridge later during cytokinesis. Identified by mass spectrometry in melanosome fractions from stage I to stage IV.
PTM: AMPylation at Tyr-77 by L.pneumophila DrrA occurs in the switch 2 region and leads to moderate inactivation of the GTPase activity. It appears to prolong the lifetime of the GTP state of RAB1B by restricting access of GTPase effectors to switch 2 and blocking effector-stimulated GTP hydrolysis, thereby rendering RAB35 constitutively active.
PTM: Phosphocholinated by L.pneumophila AnkX. Both GDP-bound and GTP-bound forms can be phosphocholinated. Phosphocholination inhibits the GEF activity of DENND1A.
SIMILARITY: Belongs to the small GTPase superfamily. Rab family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: RAB35
Diseases sorted by gene-association score: hypotrichosis 3 (4), charcot-marie-tooth disease, axonal, type 2l (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 27.06 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 690.11 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -38.50103-0.374 Picture PostScript Text
3' UTR -920.802146-0.429 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR005225 - Small_GTP-bd_dom
IPR001806 - Small_GTPase
IPR003579 - Small_GTPase_Rab_type

Pfam Domains:
PF00025 - ADP-ribosylation factor family
PF00071 - Ras family
PF01926 - 50S ribosome-binding GTPase
PF04670 - Gtr1/RagA G protein conserved region
PF08477 - Ras of Complex, Roc, domain of DAPkinase

SCOP Domains:
82171 - DPP6 N-terminal domain-like
52540 - P-loop containing nucleoside triphosphate hydrolases
53795 - PEP carboxykinase-like
55347 - Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3TW8 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q15286
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003924 GTPase activity
GO:0005515 protein binding
GO:0005525 GTP binding
GO:0005546 phosphatidylinositol-4,5-bisphosphate binding
GO:0019003 GDP binding

Biological Process:
GO:0000281 mitotic cytokinesis
GO:0008104 protein localization
GO:0015031 protein transport
GO:0016197 endosomal transport
GO:0019882 antigen processing and presentation
GO:0031175 neuron projection development
GO:0032456 endocytic recycling
GO:0036010 protein localization to endosome
GO:0048227 plasma membrane to endosome transport
GO:1990090 cellular response to nerve growth factor stimulus

Cellular Component:
GO:0005768 endosome
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0005905 clathrin-coated pit
GO:0010008 endosome membrane
GO:0016020 membrane
GO:0030136 clathrin-coated vesicle
GO:0030665 clathrin-coated vesicle membrane
GO:0031253 cell projection membrane
GO:0031410 cytoplasmic vesicle
GO:0042470 melanosome
GO:0045171 intercellular bridge
GO:0045334 clathrin-coated endocytic vesicle
GO:0055038 recycling endosome membrane
GO:0070062 extracellular exosome
GO:0098993 anchored component of synaptic vesicle membrane


-  Descriptions from all associated GenBank mRNAs
  AK001309 - Homo sapiens cDNA FLJ10447 fis, clone NT2RP1000851.
BC015931 - Homo sapiens RAB35, member RAS oncogene family, mRNA (cDNA clone MGC:8924 IMAGE:3907209), complete cds.
BC017753 - Homo sapiens, clone IMAGE:4430959, mRNA.
JD485510 - Sequence 466534 from Patent EP1572962.
JD216757 - Sequence 197781 from Patent EP1572962.
JD135596 - Sequence 116620 from Patent EP1572962.
JD135595 - Sequence 116619 from Patent EP1572962.
JD485619 - Sequence 466643 from Patent EP1572962.
JD227874 - Sequence 208898 from Patent EP1572962.
JD485652 - Sequence 466676 from Patent EP1572962.
JD477465 - Sequence 458489 from Patent EP1572962.
JD111915 - Sequence 92939 from Patent EP1572962.
JD194314 - Sequence 175338 from Patent EP1572962.
JD276932 - Sequence 257956 from Patent EP1572962.
JD367725 - Sequence 348749 from Patent EP1572962.
JD363067 - Sequence 344091 from Patent EP1572962.
JD049944 - Sequence 30968 from Patent EP1572962.
JD118613 - Sequence 99637 from Patent EP1572962.
JD141362 - Sequence 122386 from Patent EP1572962.
JD191962 - Sequence 172986 from Patent EP1572962.
JD415954 - Sequence 396978 from Patent EP1572962.
JD109199 - Sequence 90223 from Patent EP1572962.
JD319989 - Sequence 301013 from Patent EP1572962.
JD385514 - Sequence 366538 from Patent EP1572962.
JD544120 - Sequence 525144 from Patent EP1572962.
AK298391 - Homo sapiens cDNA FLJ58207 complete cds.
JD373375 - Sequence 354399 from Patent EP1572962.
JD158219 - Sequence 139243 from Patent EP1572962.
AK125543 - Homo sapiens cDNA FLJ43555 fis, clone PROST2018437, highly similar to Homo sapiens RAB35, member RAS oncogene family (RAB35).
JD212141 - Sequence 193165 from Patent EP1572962.
JD053498 - Sequence 34522 from Patent EP1572962.
JD456168 - Sequence 437192 from Patent EP1572962.
JD399848 - Sequence 380872 from Patent EP1572962.
JD261852 - Sequence 242876 from Patent EP1572962.
JD066290 - Sequence 47314 from Patent EP1572962.
JD456283 - Sequence 437307 from Patent EP1572962.
AK300127 - Homo sapiens cDNA FLJ57794 complete cds, moderately similar to Ras-related protein Rab-35.
JD295990 - Sequence 277014 from Patent EP1572962.
JD384223 - Sequence 365247 from Patent EP1572962.
JD431638 - Sequence 412662 from Patent EP1572962.
JD178077 - Sequence 159101 from Patent EP1572962.
JD086781 - Sequence 67805 from Patent EP1572962.
JD387375 - Sequence 368399 from Patent EP1572962.
JD124942 - Sequence 105966 from Patent EP1572962.
JD431353 - Sequence 412377 from Patent EP1572962.
JD565147 - Sequence 546171 from Patent EP1572962.
JD202446 - Sequence 183470 from Patent EP1572962.
JD423800 - Sequence 404824 from Patent EP1572962.
AK304620 - Homo sapiens cDNA FLJ57783 complete cds, highly similar to Ras-related protein Rab-35.
JD476065 - Sequence 457089 from Patent EP1572962.
JD045021 - Sequence 26045 from Patent EP1572962.
JD390022 - Sequence 371046 from Patent EP1572962.
JD104635 - Sequence 85659 from Patent EP1572962.
JD113007 - Sequence 94031 from Patent EP1572962.
JD502594 - Sequence 483618 from Patent EP1572962.
X79781 - H.sapiens ray mRNA.
AF498960 - Homo sapiens small GTP binding protein RAB35 (RAB35) mRNA, complete cds.
CR536486 - Homo sapiens full open reading frame cDNA clone RZPDo834G0817D for gene RAB35, RAB35, member RAS oncogene family; complete cds, incl. stopcodon.
AK312538 - Homo sapiens cDNA, FLJ92907, Homo sapiens RAB35, member RAS oncogene family (RAB35), mRNA.
BT020024 - Homo sapiens RAB35, member RAS oncogene family mRNA, complete cds.
CU677517 - Synthetic construct Homo sapiens gateway clone IMAGE:100018551 5' read RAB35 mRNA.
DQ890586 - Synthetic construct clone IMAGE:100003216; FLH164202.01X; RZPDo839D10162D RAB35, member RAS oncogene family (RAB35) gene, encodes complete protein.
DQ890603 - Synthetic construct Homo sapiens clone IMAGE:100003233; FLH263583.01X; RZPDo839C01160D RAB35, member RAS oncogene family (RAB35) gene, encodes complete protein.
DQ893750 - Synthetic construct Homo sapiens clone IMAGE:100008210; FLH164198.01L; RZPDo839D10161D RAB35, member RAS oncogene family (RAB35) gene, encodes complete protein.
CR541683 - Homo sapiens full open reading frame cDNA clone RZPDo834D0628D for gene RAB35, RAB35, member RAS oncogene family; complete cds, without stopcodon.
AB528529 - Synthetic construct DNA, clone: pF1KB3477, Homo sapiens RAB35 gene for RAB35, member RAS oncogene family, without stop codon, in Flexi system.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q15286 (Reactome details) participates in the following event(s):

R-HSA-8854173 TBC RabGAPs accelerate GTP hydrolysis by RAB35
R-HSA-8877612 DENND1s exchange GTP for GDP on RAB35
R-HSA-8870466 RGGT:CHM binds RABs
R-HSA-8870469 RGGT geranylgeranylates RAB proteins
R-HSA-8854214 TBC/RABGAPs
R-HSA-8876198 RAB GEFs exchange GTP for GDP on RABs
R-HSA-9007101 Rab regulation of trafficking
R-HSA-8873719 RAB geranylgeranylation
R-HSA-199991 Membrane Trafficking
R-HSA-597592 Post-translational protein modification
R-HSA-5653656 Vesicle-mediated transport
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: B2R6E0, B4E390, ENST00000229340.1, ENST00000229340.2, ENST00000229340.3, ENST00000229340.4, ENST00000229340.5, ENST00000229340.6, ENST00000229340.7, ENST00000229340.8, ENST00000229340.9, NM_006861, Q15286, RAB1C, RAB35_HUMAN, RAY, uc317dqn.1, uc317dqn.2
UCSC ID: ENST00000229340.10_7
RefSeq Accession: NM_006861.7
Protein: Q15286 (aka RAB35_HUMAN or RB35_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.