Human Gene RAC3 (ENST00000306897.9_4) from GENCODE V47lift37
  Description: Rac family small GTPase 3, transcript variant 1 (from RefSeq NM_005052.3)
Gencode Transcript: ENST00000306897.9_4
Gencode Gene: ENSG00000169750.9_9
Transcript (Including UTRs)
   Position: hg19 chr17:79,989,554-79,992,080 Size: 2,527 Total Exon Count: 6 Strand: +
Coding Region
   Position: hg19 chr17:79,989,638-79,991,705 Size: 2,068 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:79,989,554-79,992,080)mRNA (may differ from genome)Protein (192 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: RAC3_HUMAN
DESCRIPTION: RecName: Full=Ras-related C3 botulinum toxin substrate 3; AltName: Full=p21-Rac3; Flags: Precursor;
FUNCTION: Plasma membrane-associated small GTPase which cycles between an active GTP-bound and inactive GDP-bound state. In active state binds to a variety of effector proteins to regulate cellular responses, such as cell spreading and the formation of actin-based protusions including lamellipodia and membrane ruffles.
SUBUNIT: Interacts with the GEF protein DOCK7, which promotes the exchange between GDP and GTP, and therefore activates it. Interacts with C1D.
INTERACTION: P03372:ESR1; NbExp=5; IntAct=EBI-767084, EBI-78473; Q9UHY1:NRBP1; NbExp=3; IntAct=EBI-767084, EBI-749731;
SUBCELLULAR LOCATION: Cytoplasm. Endomembrane system. Cell projection, lamellipodium. Note=Membrane-associated when activated. Co-localizes with NRBP to endomembranes and at the cell periphery in lamellipodia.
TISSUE SPECIFICITY: Highest levels in brain, also detected in heart, placenta and pancreas.
INDUCTION: Expression down-regulated in quiescent fibroblasts and clearly induced by serum stimulation.
SIMILARITY: Belongs to the small GTPase superfamily. Rho family.
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org/Genes/RAC3ID42022ch17q25.html";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 35.61 RPKM in Brain - Cerebellum
Total median expression: 319.08 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -50.8084-0.605 Picture PostScript Text
3' UTR -197.20375-0.526 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR005225 - Small_GTP-bd_dom
IPR001806 - Small_GTPase
IPR003578 - Small_GTPase_Rho

Pfam Domains:
PF00025 - ADP-ribosylation factor family
PF00071 - Ras family
PF08477 - Ras of Complex, Roc, domain of DAPkinase

SCOP Domains:
52540 - P-loop containing nucleoside triphosphate hydrolases

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2C2H - X-ray MuPIT 2G0N - X-ray MuPIT 2IC5 - X-ray MuPIT 2OV2 - X-ray MuPIT 2QME - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P60763
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003924 GTPase activity
GO:0005515 protein binding
GO:0005525 GTP binding
GO:0048306 calcium-dependent protein binding

Biological Process:
GO:0007264 small GTPase mediated signal transduction
GO:0014041 regulation of neuron maturation
GO:0021894 cerebral cortex GABAergic interneuron development
GO:0022604 regulation of cell morphogenesis
GO:0030031 cell projection assembly
GO:0030036 actin cytoskeleton organization
GO:0031175 neuron projection development
GO:0033630 positive regulation of cell adhesion mediated by integrin
GO:0035556 intracellular signal transduction
GO:0048873 homeostasis of number of cells within a tissue
GO:0050885 neuromuscular process controlling balance
GO:0050905 neuromuscular process
GO:0051056 regulation of small GTPase mediated signal transduction
GO:0051932 synaptic transmission, GABAergic
GO:1900026 positive regulation of substrate adhesion-dependent cell spreading

Cellular Component:
GO:0005622 intracellular
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005886 plasma membrane
GO:0012505 endomembrane system
GO:0016020 membrane
GO:0030027 lamellipodium
GO:0030426 growth cone
GO:0031941 filamentous actin
GO:0042995 cell projection
GO:0043005 neuron projection
GO:0043025 neuronal cell body
GO:0048471 perinuclear region of cytoplasm
GO:0070062 extracellular exosome
GO:0071944 cell periphery


-  Descriptions from all associated GenBank mRNAs
  BC009605 - Homo sapiens ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3), mRNA (cDNA clone MGC:14757 IMAGE:4284122), complete cds.
BC015197 - Homo sapiens ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3), mRNA (cDNA clone MGC:14729 IMAGE:4275237), complete cds.
AF008591 - Homo sapiens Rac3 (RAC3) mRNA, complete cds.
JD423229 - Sequence 404253 from Patent EP1572962.
JD479025 - Sequence 460049 from Patent EP1572962.
JD406775 - Sequence 387799 from Patent EP1572962.
AB528368 - Synthetic construct DNA, clone: pF1KB6844, Homo sapiens RAC3 gene for ras-related C3 botulinum toxin substrate 3, without stop codon, in Flexi system.
DQ896400 - Synthetic construct Homo sapiens clone IMAGE:100010860; FLH193982.01L; RZPDo839E0269D ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3) (RAC3) gene, encodes complete protein.
DQ893123 - Synthetic construct clone IMAGE:100005753; FLH193986.01X; RZPDo839E0279D ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3) (RAC3) gene, encodes complete protein.
CU679415 - Synthetic construct Homo sapiens gateway clone IMAGE:100017560 5' read RAC3 mRNA.
KJ897439 - Synthetic construct Homo sapiens clone ccsbBroadEn_06833 RAC3 gene, encodes complete protein.
AF498966 - Homo sapiens small GTP binding protein RAC3 (RAC3) mRNA, complete cds.
BT019443 - Homo sapiens ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3) mRNA, complete cds.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P60763 (Reactome details) participates in the following event(s):

R-HSA-3858475 ppDVL recruits RAC
R-HSA-194894 Rho GTPase:GTP activates downstream effectors
R-HSA-194922 GAPs inactivate Rho GTPase:GTP by hydrolysis
R-HSA-194913 GEFs activate Rho GTPase:GDP
R-HSA-194854 GDIs block activation of Rho GTPase:GDP
R-HSA-195146 Dissociation of Rho GTP:GDP from GDI complex
R-HSA-4086400 PCP/CE pathway
R-HSA-194840 Rho GTPase cycle
R-HSA-3858494 Beta-catenin independent WNT signaling
R-HSA-194315 Signaling by Rho GTPases
R-HSA-195721 Signaling by WNT
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000306897.1, ENST00000306897.2, ENST00000306897.3, ENST00000306897.4, ENST00000306897.5, ENST00000306897.6, ENST00000306897.7, ENST00000306897.8, NM_005052, O14658, P60763, Q5U0M8, RAC3 , RAC3_HUMAN, uc317nyi.1, uc317nyi.2
UCSC ID: ENST00000306897.9_4
RefSeq Accession: NM_005052.3
Protein: P60763 (aka RAC3_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.