Human Gene RALA (ENST00000005257.7_4) from GENCODE V47lift37
  Description: RAS like proto-oncogene A (from RefSeq NM_005402.4)
Gencode Transcript: ENST00000005257.7_4
Gencode Gene: ENSG00000006451.8_11
Transcript (Including UTRs)
   Position: hg19 chr7:39,663,171-39,747,719 Size: 84,549 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg19 chr7:39,726,267-39,745,844 Size: 19,578 Coding Exon Count: 4 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:39,663,171-39,747,719)mRNA (may differ from genome)Protein (206 aa)
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MalacardsMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: RALA_HUMAN
DESCRIPTION: RecName: Full=Ras-related protein Ral-A; Flags: Precursor;
FUNCTION: Multifunctional GTPase involved in a variety of cellular processes including gene expression, cell migration, cell proliferation, oncogenic transformation and membrane trafficking. Accomplishes its multiple functions by interacting with distinct downstream effectors. Acts as a GTP sensor for GTP-dependent exocytosis of dense core vesicles. Plays a role in the early stages of cytokinesis and is required to tether the exocyst to the cytokinetic furrow. The RALA-exocyst complex regulates integrin- dependent membrane raft exocytosis and growth signaling. Key regulator of LPAR1 signaling and competes with ADRBK1 for binding to LPAR1 thus affecting the signaling properties of the receptor. Required for anchorage-independent proliferation of transformed cells.
ENZYME REGULATION: Alternate between an inactive form bound to GDP and an active form bound to GTP. Activated by a guanine nucleotide-exchange factor (GEF) and inactivated by a GTPase- activating protein (GAP).
SUBUNIT: Interacts with RALBP1 via its effector domain. Interacts with EXOC8 and EXOC2. EXOC2 and EXOC8 have overlapping binding sites and compete for RALA binding. Interacts with Clostridium exoenzyme C3. Interacts with RALGPS1. Interacts with LPAR1 and LPAR2. Interacts with ADRBK1 in response to LPAR1 activation. RALA and ADRBK1 mutually inhibit each other's binding to LPAR1.
INTERACTION: O54921:Exoc2 (xeno); NbExp=2; IntAct=EBI-1036803, EBI-1036795; P30154:PPP2R1B; NbExp=6; IntAct=EBI-1036803, EBI-357094;
SUBCELLULAR LOCATION: Cell surface. Cell membrane; Lipid-anchor; Cytoplasmic side. Cleavage furrow. Midbody. Note=Prior to LPA treatment found predominantly at the cell surface and in the presence of LPA co-localizes with LPAR1 and LPAR2 in the endocytic vesicles. During early cytokinesis localizes at the cleavage furrow membrane. Colocalizes with EXOC2 at the early midbody ring and persists there till maturation of the midbody.
INDUCTION: Activated in an LPA-dependent manner by LPAR1 and in an LPA-independent manner by LPAR2.
PTM: Prenylation is essential for membrane localization. The geranylgeranylated form and the farnesylated mutant does not undergo alternative prenylation in response to geranylgeranyltransferase I inhibitors (GGTIs) and farnesyltransferase I inhibitors (FTIs).
SIMILARITY: Belongs to the small GTPase superfamily. Ras family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: RALA
Diseases sorted by gene-association score: pancreatic cancer (4)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 27.49 RPKM in Esophagus - Mucosa
Total median expression: 568.19 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -115.80291-0.398 Picture PostScript Text
3' UTR -458.401875-0.244 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR005225 - Small_GTP-bd_dom
IPR001806 - Small_GTPase
IPR020849 - Small_GTPase_Ras

Pfam Domains:
PF00025 - ADP-ribosylation factor family
PF00071 - Ras family
PF08477 - Ras of Complex, Roc, domain of DAPkinase

SCOP Domains:
52540 - P-loop containing nucleoside triphosphate hydrolases
53795 - PEP carboxykinase-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1UAD - X-ray MuPIT 1ZC3 - X-ray MuPIT 1ZC4 - X-ray MuPIT 2A78 - X-ray MuPIT 2A9K - X-ray MuPIT 2BOV - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P11233
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003924 GTPase activity
GO:0005515 protein binding
GO:0005525 GTP binding
GO:0017022 myosin binding
GO:0019003 GDP binding
GO:0031625 ubiquitin protein ligase binding
GO:0031755 Edg-2 lysophosphatidic acid receptor binding
GO:0051117 ATPase binding

Biological Process:
GO:0001843 neural tube closure
GO:0006887 exocytosis
GO:0006935 chemotaxis
GO:0007049 cell cycle
GO:0007165 signal transduction
GO:0007265 Ras protein signal transduction
GO:0016032 viral process
GO:0017157 regulation of exocytosis
GO:0031532 actin cytoskeleton reorganization
GO:0035722 interleukin-12-mediated signaling pathway
GO:0051301 cell division
GO:0051491 positive regulation of filopodium assembly
GO:0051665 membrane raft localization
GO:0061024 membrane organization

Cellular Component:
GO:0005886 plasma membrane
GO:0005925 focal adhesion
GO:0009986 cell surface
GO:0016020 membrane
GO:0030659 cytoplasmic vesicle membrane
GO:0032154 cleavage furrow
GO:0043209 myelin sheath
GO:0070062 extracellular exosome
GO:0090543 Flemming body
GO:0030139 endocytic vesicle


-  Descriptions from all associated GenBank mRNAs
  BC039858 - Homo sapiens v-ral simian leukemia viral oncogene homolog A (ras related), mRNA (cDNA clone MGC:48949 IMAGE:5495399), complete cds.
AK308109 - Homo sapiens cDNA, FLJ98057.
AB464349 - Synthetic construct DNA, clone: pF1KB8152, Homo sapiens RALA gene for v-ral simian leukemia viral oncogene homolog A, without stop codon, in Flexi system.
KJ891977 - Synthetic construct Homo sapiens clone ccsbBroadEn_01371 RALA gene, encodes complete protein.
X15014 - Human RAL A gene.
AF493910 - Homo sapiens Ras family small GTP binding protein RALA (RALA) mRNA, complete cds.
M29893 - Human low molecular mass GTP-binding protein (ral) mRNA, complete cds.
AK026850 - Homo sapiens cDNA: FLJ23197 fis, clone REC00917.
AF086082 - Homo sapiens full length insert cDNA clone YZ83E03.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_rasPathway - Ras Signaling Pathway

Reactome (by CSHL, EBI, and GO)

Protein P11233 (Reactome details) participates in the following event(s):

R-HSA-2255342 RALA exchanges GDP for GTP
R-HSA-1458485 RALA hydrolyzes GTP
R-HSA-2316349 RALA:GTP binds MYO1C:CALM1 and activates MYO1C
R-HSA-170991 Activation of SRC by RAL-GTP
R-HSA-171026 Guanine nucleotide exchange on RAL
R-HSA-8950505 Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation
R-HSA-1445148 Translocation of GLUT4 to the plasma membrane
R-HSA-9020591 Interleukin-12 signaling
R-HSA-171007 p38MAPK events
R-HSA-199991 Membrane Trafficking
R-HSA-447115 Interleukin-12 family signaling
R-HSA-167044 Signalling to RAS
R-HSA-5653656 Vesicle-mediated transport
R-HSA-449147 Signaling by Interleukins
R-HSA-187687 Signalling to ERKs
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-187037 Signaling by NTRK1 (TRKA)
R-HSA-168256 Immune System
R-HSA-166520 Signaling by NTRKs
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: A4D1W3, ENST00000005257.1, ENST00000005257.2, ENST00000005257.3, ENST00000005257.4, ENST00000005257.5, ENST00000005257.6, NM_005402, P11233, RAL, RALA_HUMAN, uc317bvo.1, uc317bvo.2
UCSC ID: ENST00000005257.7_4
RefSeq Accession: NM_005402.4
Protein: P11233 (aka RALA_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.