Human Gene RALB (ENST00000272519.10_4) from GENCODE V47lift37
  Description: RAS like proto-oncogene B, transcript variant 1 (from RefSeq NM_002881.3)
Gencode Transcript: ENST00000272519.10_4
Gencode Gene: ENSG00000144118.14_8
Transcript (Including UTRs)
   Position: hg19 chr2:121,010,428-121,052,286 Size: 41,859 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg19 chr2:121,036,241-121,050,836 Size: 14,596 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:121,010,428-121,052,286)mRNA (may differ from genome)Protein (206 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: RALB_HUMAN
DESCRIPTION: RecName: Full=Ras-related protein Ral-B; Flags: Precursor;
FUNCTION: Multifunctional GTPase involved in a variety of cellular processes including gene expression, cell migration, cell proliferation, oncogenic transformation and membrane trafficking. Accomplishes its multiple functions by interacting with distinct downstream effectors. Acts as a GTP sensor for GTP-dependent exocytosis of dense core vesicles. Required both to stabilize the assembly of the exocyst complex and to localize functional exocyst complexes to the leading edge of migrating cells. Plays a role in the late stages of cytokinesis and is required for the abscission of the bridge joining the sister cells emerging from mitosis. Required for suppression of apoptosis.
ENZYME REGULATION: Alternate between an inactive form bound to GDP and an active form bound to GTP. Activated by a guanine nucleotide-exchange factor (GEF) and inactivated by a GTPase- activating protein (GAP).
SUBUNIT: Interacts with EXOC2 and EXOC8. Interacts with RALBP1 via its effector domain.
SUBCELLULAR LOCATION: Cell membrane; Lipid-anchor; Cytoplasmic side. Note=During late cytokinesis localizes at the midbody.
PTM: Prenylation is essential for membrane localization. The geranylgeranylated form and the farnesylated mutant does not undergo alternative prenylation in response to geranylgeranyltransferase I inhibitors (GGTIs) and farnesyltransferase I inhibitors (FTIs).
SIMILARITY: Belongs to the small GTPase superfamily. Ras family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: RALB
Diseases sorted by gene-association score: pancreatic cancer (4)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 56.65 RPKM in Whole Blood
Total median expression: 1072.07 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -77.10176-0.438 Picture PostScript Text
3' UTR -383.801450-0.265 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR005225 - Small_GTP-bd_dom
IPR001806 - Small_GTPase
IPR020849 - Small_GTPase_Ras

Pfam Domains:
PF00025 - ADP-ribosylation factor family
PF00071 - Ras family
PF08477 - Ras of Complex, Roc, domain of DAPkinase

SCOP Domains:
52540 - P-loop containing nucleoside triphosphate hydrolases
53795 - PEP carboxykinase-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2KE5 - NMR MuPIT 2KWI - NMR MuPIT


ModBase Predicted Comparative 3D Structure on P11234
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003924 GTPase activity
GO:0005515 protein binding
GO:0005525 GTP binding
GO:0019003 GDP binding
GO:0031625 ubiquitin protein ligase binding
GO:0051117 ATPase binding

Biological Process:
GO:0001928 regulation of exocyst assembly
GO:0001934 positive regulation of protein phosphorylation
GO:0006915 apoptotic process
GO:0007049 cell cycle
GO:0007165 signal transduction
GO:0007265 Ras protein signal transduction
GO:0009267 cellular response to starvation
GO:0032091 negative regulation of protein binding
GO:0032092 positive regulation of protein binding
GO:0051301 cell division
GO:0060178 regulation of exocyst localization
GO:0071360 cellular response to exogenous dsRNA
GO:0071902 positive regulation of protein serine/threonine kinase activity
GO:2000786 positive regulation of autophagosome assembly

Cellular Component:
GO:0005622 intracellular
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0030496 midbody
GO:0070062 extracellular exosome
GO:0000145 exocyst
GO:0005776 autophagosome


-  Descriptions from all associated GenBank mRNAs
  JF432766 - Synthetic construct Homo sapiens clone IMAGE:100074010 v-ral simian leukemia viral oncogene homolog B (ras related; GTP binding protein) (RALB) gene, encodes complete protein.
KJ891978 - Synthetic construct Homo sapiens clone ccsbBroadEn_01372 RALB gene, encodes complete protein.
AK303214 - Homo sapiens cDNA FLJ55177 complete cds, highly similar to Ras-related protein Ral-B.
LF383635 - JP 2014500723-A/191138: Polycomb-Associated Non-Coding RNAs.
LP895393 - Sequence 257 from Patent EP3253886.
AK304588 - Homo sapiens cDNA FLJ54954 complete cds, highly similar to Ras-related protein Ral-B.
AK127675 - Homo sapiens cDNA FLJ45773 fis, clone NETRP2003448, highly similar to Ras-related protein RAL-B.
M35416 - Human GTP-binding protein (RALB) mRNA, complete cds.
BC018163 - Homo sapiens v-ral simian leukemia viral oncogene homolog B (ras related; GTP binding protein), mRNA (cDNA clone MGC:9025 IMAGE:3880116), complete cds.
JD220315 - Sequence 201339 from Patent EP1572962.
AK312453 - Homo sapiens cDNA, FLJ92808, Homo sapiens v-ral simian leukemia viral oncogene homolog B (rasrelated; GTP binding protein) (RALB), mRNA.
AB590643 - Synthetic construct DNA, clone: pFN21AE1696, Homo sapiens RALB gene for v-ral simian leukemia viral oncogene homolog B, without stop codon, in Flexi system.
BT006953 - Homo sapiens v-ral simian leukemia viral oncogene homolog B (ras related; GTP binding protein) mRNA, complete cds.
AF493911 - Homo sapiens Ras family small GTP binding protein RALB (RALB) mRNA, complete cds.
X15015 - Human RAL B gene.
LF319256 - JP 2014500723-A/126759: Polycomb-Associated Non-Coding RNAs.
LF319255 - JP 2014500723-A/126758: Polycomb-Associated Non-Coding RNAs.
LF319254 - JP 2014500723-A/126757: Polycomb-Associated Non-Coding RNAs.
LF319253 - JP 2014500723-A/126756: Polycomb-Associated Non-Coding RNAs.
LF319252 - JP 2014500723-A/126755: Polycomb-Associated Non-Coding RNAs.
JD273745 - Sequence 254769 from Patent EP1572962.
LF319251 - JP 2014500723-A/126754: Polycomb-Associated Non-Coding RNAs.
JD381462 - Sequence 362486 from Patent EP1572962.
JD045553 - Sequence 26577 from Patent EP1572962.
JD496757 - Sequence 477781 from Patent EP1572962.
DQ570027 - Homo sapiens piRNA piR-30139, complete sequence.
LF319250 - JP 2014500723-A/126753: Polycomb-Associated Non-Coding RNAs.
MA619212 - JP 2018138019-A/191138: Polycomb-Associated Non-Coding RNAs.
MA554833 - JP 2018138019-A/126759: Polycomb-Associated Non-Coding RNAs.
MA554832 - JP 2018138019-A/126758: Polycomb-Associated Non-Coding RNAs.
MA554831 - JP 2018138019-A/126757: Polycomb-Associated Non-Coding RNAs.
MA554830 - JP 2018138019-A/126756: Polycomb-Associated Non-Coding RNAs.
MA554829 - JP 2018138019-A/126755: Polycomb-Associated Non-Coding RNAs.
MA554828 - JP 2018138019-A/126754: Polycomb-Associated Non-Coding RNAs.
MA554827 - JP 2018138019-A/126753: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P11234 (Reactome details) participates in the following event(s):

R-HSA-171026 Guanine nucleotide exchange on RAL
R-HSA-170991 Activation of SRC by RAL-GTP
R-HSA-171007 p38MAPK events
R-HSA-167044 Signalling to RAS
R-HSA-187687 Signalling to ERKs
R-HSA-187037 Signaling by NTRK1 (TRKA)
R-HSA-166520 Signaling by NTRKs
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: B4E040, ENST00000272519.1, ENST00000272519.2, ENST00000272519.3, ENST00000272519.4, ENST00000272519.5, ENST00000272519.6, ENST00000272519.7, ENST00000272519.8, ENST00000272519.9, NM_002881, P11234, Q53T32, Q6ZS74, RALB_HUMAN, uc317ize.1, uc317ize.2
UCSC ID: ENST00000272519.10_4
RefSeq Accession: NM_002881.3
Protein: P11234 (aka RALB_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.