Human Gene RALBP1 (ENST00000383432.8_4) from GENCODE V47lift37
  Description: ralA binding protein 1 (from RefSeq NM_006788.4)
Gencode Transcript: ENST00000383432.8_4
Gencode Gene: ENSG00000017797.13_9
Transcript (Including UTRs)
   Position: hg19 chr18:9,475,511-9,538,112 Size: 62,602 Total Exon Count: 10 Strand: +
Coding Region
   Position: hg19 chr18:9,513,044-9,535,935 Size: 22,892 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr18:9,475,511-9,538,112)mRNA (may differ from genome)Protein (655 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: RBP1_HUMAN
DESCRIPTION: RecName: Full=RalA-binding protein 1; Short=RalBP1; AltName: Full=76 kDa Ral-interacting protein; AltName: Full=Dinitrophenyl S-glutathione ATPase; Short=DNP-SG ATPase; AltName: Full=Ral-interacting protein 1;
FUNCTION: Can activate specifically hydrolysis of GTP bound to RAC1 and CDC42, but not RALA. Mediates ATP-dependent transport of S-(2,4-dinitrophenyl)-glutathione (DNP-SG) and doxorubicin (DOX) and is the major ATP-dependent transporter of glutathione conjugates of electrophiles (GS-E) and DOX in erythrocytes. Can catalyze transport of glutathione conjugates and xenobiotics, and may contribute to the multidrug resistance phenomenon. Serves as a scaffold protein that brings together proteins forming an endocytotic complex during interphase and also with CDK1 to switch off endocytosis, One of its substrates would be EPN1/Epsin.
SUBUNIT: Interacts with the GTP-bound form of RALA, RALB, CDC42 and RAC1. Interacts with REPS1 and REPS2 and this does not affect the Ral-binding activity. Interacts with DAB2IP. Interacts with catalytically active CCNB1 and CDK1 during mitosis. Interacts with EPN1, NUMB and TFAP2A during interphase and mitosis.
SUBCELLULAR LOCATION: Membrane; Peripheral membrane protein.
TISSUE SPECIFICITY: Expressed ubiquitously but at low levels. Shows a strong expression in the erythrocytes.
SIMILARITY: Contains 1 Rho-GAP domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: RALBP1
Diseases sorted by gene-association score: lung cancer (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 36.72 RPKM in Skin - Not Sun Exposed (Suprapubic)
Total median expression: 766.60 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -106.90234-0.457 Picture PostScript Text
3' UTR -693.702177-0.319 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR008936 - Rho_GTPase_activation_prot
IPR000198 - RhoGAP_dom

Pfam Domains:
PF00620 - RhoGAP domain

SCOP Domains:
48350 - GTPase activation domain, GAP

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2KWH - NMR MuPIT 2KWI - NMR MuPIT


ModBase Predicted Comparative 3D Structure on Q15311
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
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 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005096 GTPase activator activity
GO:0005515 protein binding
GO:0015238 drug transmembrane transporter activity
GO:0017160 Ral GTPase binding
GO:0022857 transmembrane transporter activity
GO:0042626 ATPase activity, coupled to transmembrane movement of substances
GO:0048365 Rac GTPase binding

Biological Process:
GO:0006855 drug transmembrane transport
GO:0006897 endocytosis
GO:0006935 chemotaxis
GO:0007165 signal transduction
GO:0007264 small GTPase mediated signal transduction
GO:0043087 regulation of GTPase activity
GO:0043547 positive regulation of GTPase activity
GO:0051056 regulation of small GTPase mediated signal transduction
GO:0055085 transmembrane transport
GO:1900753 doxorubicin transport

Cellular Component:
GO:0005829 cytosol
GO:0016020 membrane


-  Descriptions from all associated GenBank mRNAs
  L42542 - Human RLIP76 protein mRNA, complete cds.
BC013126 - Homo sapiens ralA binding protein 1, mRNA (cDNA clone MGC:5006 IMAGE:3049077), complete cds.
AK300845 - Homo sapiens cDNA FLJ61419 complete cds, highly similar to RalA-binding protein 1.
JD062204 - Sequence 43228 from Patent EP1572962.
KJ893171 - Synthetic construct Homo sapiens clone ccsbBroadEn_02565 RALBP1 gene, encodes complete protein.
AB590229 - Synthetic construct DNA, clone: pFN21AE1484, Homo sapiens RALBP1 gene for ralA binding protein 1, without stop codon, in Flexi system.
DQ891604 - Synthetic construct clone IMAGE:100004234; FLH178561.01X; RZPDo839E07128D ralA binding protein 1 (RALBP1) gene, encodes complete protein.
EU176588 - Synthetic construct Homo sapiens clone IMAGE:100011419; FLH178560.01L; RZPDo839E02254D ralA binding protein 1 (RALBP1) gene, encodes complete protein.
AY517554 - Homo sapiens hypothetical rhabdomyosarcoma antigen MU-RMS-40.2A mRNA, complete cds.
AB209924 - Homo sapiens mRNA for ralA binding protein 1 variant protein.
JD441822 - Sequence 422846 from Patent EP1572962.
JD494027 - Sequence 475051 from Patent EP1572962.
JD290457 - Sequence 271481 from Patent EP1572962.
JD492678 - Sequence 473702 from Patent EP1572962.
JD297430 - Sequence 278454 from Patent EP1572962.
JD331655 - Sequence 312679 from Patent EP1572962.
JD552886 - Sequence 533910 from Patent EP1572962.
JD186551 - Sequence 167575 from Patent EP1572962.
JD131153 - Sequence 112177 from Patent EP1572962.
JD233583 - Sequence 214607 from Patent EP1572962.
JD209881 - Sequence 190905 from Patent EP1572962.
JD390021 - Sequence 371045 from Patent EP1572962.
JD229687 - Sequence 210711 from Patent EP1572962.
JD247647 - Sequence 228671 from Patent EP1572962.
JD502468 - Sequence 483492 from Patent EP1572962.
JD278385 - Sequence 259409 from Patent EP1572962.
JD121658 - Sequence 102682 from Patent EP1572962.
JD449080 - Sequence 430104 from Patent EP1572962.
JD161057 - Sequence 142081 from Patent EP1572962.
JD369131 - Sequence 350155 from Patent EP1572962.
JD360522 - Sequence 341546 from Patent EP1572962.
JD454318 - Sequence 435342 from Patent EP1572962.
JD298227 - Sequence 279251 from Patent EP1572962.
JD301301 - Sequence 282325 from Patent EP1572962.
JD288579 - Sequence 269603 from Patent EP1572962.
JD167159 - Sequence 148183 from Patent EP1572962.
JD447493 - Sequence 428517 from Patent EP1572962.
JD389985 - Sequence 371009 from Patent EP1572962.
JD423908 - Sequence 404932 from Patent EP1572962.
JD426533 - Sequence 407557 from Patent EP1572962.
JD151161 - Sequence 132185 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q15311 (Reactome details) participates in the following event(s):

R-HSA-194922 GAPs inactivate Rho GTPase:GTP by hydrolysis
R-HSA-194840 Rho GTPase cycle
R-HSA-194315 Signaling by Rho GTPases
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: D3DUI0, ENST00000383432.1, ENST00000383432.2, ENST00000383432.3, ENST00000383432.4, ENST00000383432.5, ENST00000383432.6, ENST00000383432.7, NM_006788, Q15311, RALBP1 , RBP1_HUMAN, RLIP , RLIP1 , RLIP76 , uc318rdv.1, uc318rdv.2
UCSC ID: ENST00000383432.8_4
RefSeq Accession: NM_006788.4
Protein: Q15311 (aka RBP1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.