Human Gene RASSF2 (ENST00000379400.8_7) from GENCODE V47lift37
  Description: Ras association domain family member 2, transcript variant 1 (from RefSeq NM_014737.3)
Gencode Transcript: ENST00000379400.8_7
Gencode Gene: ENSG00000101265.16_9
Transcript (Including UTRs)
   Position: hg19 chr20:4,760,669-4,804,254 Size: 43,586 Total Exon Count: 12 Strand: -
Coding Region
   Position: hg19 chr20:4,764,919-4,781,676 Size: 16,758 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr20:4,760,669-4,804,254)mRNA (may differ from genome)Protein (326 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: RASF2_HUMAN
DESCRIPTION: RecName: Full=Ras association domain-containing protein 2;
FUNCTION: Potential tumor suppressor. Acts as a KRAS-specific effector protein. May promote apoptosis and cell cycle arrest. Stabilizes STK3/MST2 by protecting it from proteasomal degradation.
SUBUNIT: Interacts directly with activated KRAS in a GTP-dependent manner. Interacts (via SARAH domain) with STK3/MST2 AND STK4/MST1.
INTERACTION: P01116:KRAS; NbExp=2; IntAct=EBI-960081, EBI-367415; Q13043:STK4; NbExp=4; IntAct=EBI-960081, EBI-367376;
SUBCELLULAR LOCATION: Nucleus. Cytoplasm. Note=Translocates to the cytoplasm in the presence of STK3/MST2 AND STK4/MST1.
TISSUE SPECIFICITY: Widely expressed with highest levels in brain, placenta, peripheral blood and lung. Frequently down-regulated in lung tumor cell lines.
PTM: Phosphorylated by STK3/MST2 and STK4/MST1.
SIMILARITY: Contains 1 Ras-associating domain.
SIMILARITY: Contains 1 SARAH domain.
SEQUENCE CAUTION: Sequence=BAA11485.2; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 155.37 RPKM in Brain - Spinal cord (cervical c-1)
Total median expression: 832.76 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -44.40159-0.279 Picture PostScript Text
3' UTR -1411.804250-0.332 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000159 - Ras-assoc
IPR011524 - SARAH

Pfam Domains:
PF00788 - Ras association (RalGDS/AF-6) domain
PF16517 - Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain

SCOP Domains:
54236 - Ubiquitin-like
69989 - C-terminal domain of PLC-beta

ModBase Predicted Comparative 3D Structure on P50749
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004672 protein kinase activity
GO:0005515 protein binding

Biological Process:
GO:0001501 skeletal system development
GO:0001503 ossification
GO:0006468 protein phosphorylation
GO:0007049 cell cycle
GO:0007165 signal transduction
GO:0031954 positive regulation of protein autophosphorylation
GO:0033137 negative regulation of peptidyl-serine phosphorylation
GO:0038168 epidermal growth factor receptor signaling pathway via I-kappaB kinase/NF-kappaB cascade
GO:0042981 regulation of apoptotic process
GO:0043065 positive regulation of apoptotic process
GO:0045667 regulation of osteoblast differentiation
GO:0045670 regulation of osteoclast differentiation
GO:0045860 positive regulation of protein kinase activity
GO:0046330 positive regulation of JNK cascade
GO:0046849 bone remodeling
GO:0048872 homeostasis of number of cells
GO:0050821 protein stabilization
GO:1901222 regulation of NIK/NF-kappaB signaling
GO:1901223 negative regulation of NIK/NF-kappaB signaling

Cellular Component:
GO:0000775 chromosome, centromeric region
GO:0000776 kinetochore
GO:0000777 condensed chromosome kinetochore
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005694 chromosome
GO:0005737 cytoplasm
GO:0005794 Golgi apparatus
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0032991 macromolecular complex


-  Descriptions from all associated GenBank mRNAs
  AY154471 - Homo sapiens ras association (RalGDS/AF-6) domain family 2 protein isoform 2B (RASSF2) mRNA, complete cds; alternatively spliced.
AY154472 - Homo sapiens ras association (RalGDS/AF-6) domain family 2 protein isoform 2C (RASSF2) mRNA, complete cds; alternatively spliced.
AY154470 - Homo sapiens ras association (RalGDS/AF-6) domain family 2 protein isoform 2A (RASSF2) mRNA, complete cds; alternatively spliced.
D79990 - Homo sapiens KIAA0168 mRNA.
CR627436 - Homo sapiens mRNA; cDNA DKFZp781O1747 (from clone DKFZp781O1747).
JD046485 - Sequence 27509 from Patent EP1572962.
JD518513 - Sequence 499537 from Patent EP1572962.
JD134689 - Sequence 115713 from Patent EP1572962.
JD449094 - Sequence 430118 from Patent EP1572962.
JD392567 - Sequence 373591 from Patent EP1572962.
JD360500 - Sequence 341524 from Patent EP1572962.
JD381743 - Sequence 362767 from Patent EP1572962.
JD242954 - Sequence 223978 from Patent EP1572962.
JD121106 - Sequence 102130 from Patent EP1572962.
JD052388 - Sequence 33412 from Patent EP1572962.
JD337519 - Sequence 318543 from Patent EP1572962.
JD371243 - Sequence 352267 from Patent EP1572962.
JD514408 - Sequence 495432 from Patent EP1572962.
JD414456 - Sequence 395480 from Patent EP1572962.
JD524674 - Sequence 505698 from Patent EP1572962.
JD352450 - Sequence 333474 from Patent EP1572962.
JD463029 - Sequence 444053 from Patent EP1572962.
JD337518 - Sequence 318542 from Patent EP1572962.
JD438033 - Sequence 419057 from Patent EP1572962.
JD558192 - Sequence 539216 from Patent EP1572962.
JD063899 - Sequence 44923 from Patent EP1572962.
JD265903 - Sequence 246927 from Patent EP1572962.
JD090599 - Sequence 71623 from Patent EP1572962.
JD372948 - Sequence 353972 from Patent EP1572962.
JD042789 - Sequence 23813 from Patent EP1572962.
JD302478 - Sequence 283502 from Patent EP1572962.
JD359337 - Sequence 340361 from Patent EP1572962.
JD438628 - Sequence 419652 from Patent EP1572962.
JD511737 - Sequence 492761 from Patent EP1572962.
JD341979 - Sequence 323003 from Patent EP1572962.
JD445389 - Sequence 426413 from Patent EP1572962.
AK307232 - Homo sapiens cDNA, FLJ97180.
JD421147 - Sequence 402171 from Patent EP1572962.
JD161857 - Sequence 142881 from Patent EP1572962.
AK309635 - Homo sapiens cDNA, FLJ99676.
JD298265 - Sequence 279289 from Patent EP1572962.
JD565011 - Sequence 546035 from Patent EP1572962.
JD084454 - Sequence 65478 from Patent EP1572962.
JD446352 - Sequence 427376 from Patent EP1572962.
JD186189 - Sequence 167213 from Patent EP1572962.
JD297374 - Sequence 278398 from Patent EP1572962.
JD304507 - Sequence 285531 from Patent EP1572962.
JD082712 - Sequence 63736 from Patent EP1572962.
JD205091 - Sequence 186115 from Patent EP1572962.
JD164306 - Sequence 145330 from Patent EP1572962.
JD116133 - Sequence 97157 from Patent EP1572962.
JD068205 - Sequence 49229 from Patent EP1572962.
JD455154 - Sequence 436178 from Patent EP1572962.
JD467404 - Sequence 448428 from Patent EP1572962.
JD276529 - Sequence 257553 from Patent EP1572962.
JD243834 - Sequence 224858 from Patent EP1572962.
JD290764 - Sequence 271788 from Patent EP1572962.
JD335959 - Sequence 316983 from Patent EP1572962.
JD535156 - Sequence 516180 from Patent EP1572962.
JD235970 - Sequence 216994 from Patent EP1572962.
JD418289 - Sequence 399313 from Patent EP1572962.
JD259864 - Sequence 240888 from Patent EP1572962.
JD457788 - Sequence 438812 from Patent EP1572962.
JD167300 - Sequence 148324 from Patent EP1572962.
JD430722 - Sequence 411746 from Patent EP1572962.
JD468942 - Sequence 449966 from Patent EP1572962.
JD192860 - Sequence 173884 from Patent EP1572962.
JD230481 - Sequence 211505 from Patent EP1572962.
JD444747 - Sequence 425771 from Patent EP1572962.
JD540716 - Sequence 521740 from Patent EP1572962.
JD148142 - Sequence 129166 from Patent EP1572962.
JD113319 - Sequence 94343 from Patent EP1572962.
JD100124 - Sequence 81148 from Patent EP1572962.
JD043195 - Sequence 24219 from Patent EP1572962.
JD426242 - Sequence 407266 from Patent EP1572962.
BC117118 - Homo sapiens Ras association (RalGDS/AF-6) domain family member 2, mRNA (cDNA clone MGC:150727 IMAGE:40125669), complete cds.
BC117120 - Homo sapiens Ras association (RalGDS/AF-6) domain family member 2, mRNA (cDNA clone MGC:150729 IMAGE:40125671), complete cds.
JD057028 - Sequence 38052 from Patent EP1572962.
JD374200 - Sequence 355224 from Patent EP1572962.
JD501132 - Sequence 482156 from Patent EP1572962.
JD235478 - Sequence 216502 from Patent EP1572962.
JD427238 - Sequence 408262 from Patent EP1572962.
JD497228 - Sequence 478252 from Patent EP1572962.
JD243746 - Sequence 224770 from Patent EP1572962.
JD338470 - Sequence 319494 from Patent EP1572962.
JD259685 - Sequence 240709 from Patent EP1572962.
JD332171 - Sequence 313195 from Patent EP1572962.
JD063830 - Sequence 44854 from Patent EP1572962.
JD149918 - Sequence 130942 from Patent EP1572962.
JD358481 - Sequence 339505 from Patent EP1572962.
JD274333 - Sequence 255357 from Patent EP1572962.
AK222650 - Homo sapiens mRNA for Ras association domain family 2 isoform 1 variant, clone: CBL07461.
AK291458 - Homo sapiens cDNA FLJ75940 complete cds, highly similar to Homo sapiens Ras association (RalGDS/AF-6) domain family 2 (RASSF2), transcript variant 1, mRNA.
JD384048 - Sequence 365072 from Patent EP1572962.
JD150561 - Sequence 131585 from Patent EP1572962.
JD143786 - Sequence 124810 from Patent EP1572962.
BC110385 - Homo sapiens Ras association (RalGDS/AF-6) domain family member 2, mRNA (cDNA clone IMAGE:5167496), complete cds.
JD239294 - Sequence 220318 from Patent EP1572962.
JD563370 - Sequence 544394 from Patent EP1572962.
JD484242 - Sequence 465266 from Patent EP1572962.
AB383779 - Synthetic construct DNA, clone: pF1KSDA0168, Homo sapiens RASSF2 gene for Ras association (RalGDS/AF-6) domain family 2, complete cds, without stop codon, in Flexi system.
HQ258175 - Synthetic construct Homo sapiens clone IMAGE:100072484 Ras association (RalGDS/AF-6) domain family member 2 (RASSF2), transcript variant 1 (RASSF2) gene, encodes complete protein.
KJ892845 - Synthetic construct Homo sapiens clone ccsbBroadEn_02239 RASSF2 gene, encodes complete protein.
JD345192 - Sequence 326216 from Patent EP1572962.
JD248004 - Sequence 229028 from Patent EP1572962.
JD224784 - Sequence 205808 from Patent EP1572962.
JD073978 - Sequence 55002 from Patent EP1572962.
JD439243 - Sequence 420267 from Patent EP1572962.
JD350077 - Sequence 331101 from Patent EP1572962.
JD228936 - Sequence 209960 from Patent EP1572962.
JD443862 - Sequence 424886 from Patent EP1572962.
JD045012 - Sequence 26036 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A6NIX9, A8K5Z3, CENP-34 , ENST00000379400.1, ENST00000379400.2, ENST00000379400.3, ENST00000379400.4, ENST00000379400.5, ENST00000379400.6, ENST00000379400.7, KIAA0168, NM_014737, P50749, Q17S06, Q53HD0, Q6AHZ2, Q8IZA5, RASF2_HUMAN, uc318oyg.1, uc318oyg.2
UCSC ID: ENST00000379400.8_7
RefSeq Accession: NM_014737.3
Protein: P50749 (aka RASF2_HUMAN or RSF2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.