Human Gene RAVER1 (ENST00000617231.5_14) from GENCODE V47lift37
  Description: ribonucleoprotein, PTB binding 1, transcript variant 1 (from RefSeq NM_133452.3)
Gencode Transcript: ENST00000617231.5_14
Gencode Gene: ENSG00000161847.15_19
Transcript (Including UTRs)
   Position: hg19 chr19:10,426,888-10,444,205 Size: 17,318 Total Exon Count: 13 Strand: -
Coding Region
   Position: hg19 chr19:10,428,130-10,444,183 Size: 16,054 Coding Exon Count: 13 

Page IndexSequence and LinksPrimersCTDGene AllelesRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:10,426,888-10,444,205)mRNA (may differ from genome)Protein (739 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedUniProtKBWikipedia
BioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -3.1022-0.141 Picture PostScript Text
3' UTR -443.901242-0.357 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Descriptions from all associated GenBank mRNAs
  BC002848 - Homo sapiens mRNA similar to HLA class II region expressed gene KE2 (cDNA clone IMAGE:3637433).
BC018887 - Homo sapiens cDNA clone IMAGE:3637361, **** WARNING: chimeric clone ****.
BC037565 - Homo sapiens ribonucleoprotein, PTB-binding 1, mRNA (cDNA clone IMAGE:5113697), partial cds.
BC037428 - Homo sapiens ribonucleoprotein, PTB-binding 1, mRNA (cDNA clone IMAGE:5532899).
AB075858 - Homo sapiens mRNA for KIAA1978 protein.
JD127580 - Sequence 108604 from Patent EP1572962.
JD277959 - Sequence 258983 from Patent EP1572962.
JD335540 - Sequence 316564 from Patent EP1572962.
JD392988 - Sequence 374012 from Patent EP1572962.
JD079728 - Sequence 60752 from Patent EP1572962.
JD229508 - Sequence 210532 from Patent EP1572962.
JD398353 - Sequence 379377 from Patent EP1572962.
JD355071 - Sequence 336095 from Patent EP1572962.
JD073031 - Sequence 54055 from Patent EP1572962.
JD123863 - Sequence 104887 from Patent EP1572962.
JD501698 - Sequence 482722 from Patent EP1572962.
JD564021 - Sequence 545045 from Patent EP1572962.
JD235819 - Sequence 216843 from Patent EP1572962.
JD123749 - Sequence 104773 from Patent EP1572962.
JD301324 - Sequence 282348 from Patent EP1572962.
JD559259 - Sequence 540283 from Patent EP1572962.
JD394672 - Sequence 375696 from Patent EP1572962.
JD396661 - Sequence 377685 from Patent EP1572962.
JD263427 - Sequence 244451 from Patent EP1572962.
JD464326 - Sequence 445350 from Patent EP1572962.
JD526602 - Sequence 507626 from Patent EP1572962.
JD184545 - Sequence 165569 from Patent EP1572962.
DL491320 - Novel nucleic acids.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A087WZ13, A0A087WZ13_HUMAN, ENST00000617231.1, ENST00000617231.2, ENST00000617231.3, ENST00000617231.4, NM_133452, RAVER1 , uc327qyy.1, uc327qyy.2
UCSC ID: ENST00000617231.5_14
RefSeq Accession: NM_133452.3

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.