Human Gene RENBP (ENST00000393700.8_8) from GENCODE V47lift37
  Description: renin binding protein (from RefSeq NM_002910.6)
Gencode Transcript: ENST00000393700.8_8
Gencode Gene: ENSG00000102032.13_11
Transcript (Including UTRs)
   Position: hg19 chrX:153,200,722-153,210,095 Size: 9,374 Total Exon Count: 11 Strand: -
Coding Region
   Position: hg19 chrX:153,200,739-153,210,062 Size: 9,324 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:153,200,722-153,210,095)mRNA (may differ from genome)Protein (427 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: RENBP_HUMAN
DESCRIPTION: RecName: Full=N-acylglucosamine 2-epimerase; Short=AGE; EC=5.1.3.8; AltName: Full=GlcNAc 2-epimerase; AltName: Full=N-acetyl-D-glucosamine 2-epimerase; AltName: Full=Renin-binding protein; Short=RnBP;
FUNCTION: Catalyzes the interconversion of N-acetylglucosamine to N-acetylmannosamine. Binds to renin forming a protein complex called high molecular weight (HMW) renin and inhibits renin activity. Involved in the N-glycolylneuraminic acid (Neu5Gc) degradation pathway: although human is not able to catalyze formation of Neu5Gc due to the inactive CMAHP enzyme, Neu5Gc is present in food and must be degraded.
CATALYTIC ACTIVITY: N-acyl-D-glucosamine = N-acyl-D-mannosamine.
PATHWAY: Amino-sugar metabolism; N-acetylneuraminate degradation.
SUBUNIT: Homodimer.
SIMILARITY: Belongs to the N-acylglucosamine 2-epimerase family.
CAUTION: It is uncertain whether Met-1 or Met-11 is the initiator.
SEQUENCE CAUTION: Sequence=AAH15558.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=BAA01082.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=BAA01082.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: RENBP
Diseases sorted by gene-association score: wilms tumor susceptibility-5 (2), hypertension, essential (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 42.37 RPKM in Spleen
Total median expression: 311.52 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -9.8033-0.297 Picture PostScript Text
3' UTR -1.1017-0.065 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR008928 - 6-hairpin_glycosidase-like
IPR012341 - 6hp_glycosidase
IPR010819 - AGE/RnBP

Pfam Domains:
PF07221 - N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)

SCOP Domains:
48208 - Six-hairpin glycosidases
48225 - Seven-hairpin glycosidases
48230 - Chondroitin AC/alginate lyase

ModBase Predicted Comparative 3D Structure on P51606
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003824 catalytic activity
GO:0004857 enzyme inhibitor activity
GO:0004866 endopeptidase inhibitor activity
GO:0005524 ATP binding
GO:0016853 isomerase activity
GO:0017076 purine nucleotide binding
GO:0042803 protein homodimerization activity
GO:0050121 N-acylglucosamine 2-epimerase activity

Biological Process:
GO:0006044 N-acetylglucosamine metabolic process
GO:0006048 UDP-N-acetylglucosamine biosynthetic process
GO:0006051 N-acetylmannosamine metabolic process
GO:0008217 regulation of blood pressure
GO:0010951 negative regulation of endopeptidase activity
GO:0019262 N-acetylneuraminate catabolic process
GO:0043086 negative regulation of catalytic activity

Cellular Component:
GO:0005829 cytosol
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  BC015558 - Homo sapiens renin binding protein, mRNA (cDNA clone MGC:2255 IMAGE:3050914), complete cds.
D10232 - Homo sapiens mRNA for renin-binding protein, complete cds.
DQ892270 - Synthetic construct clone IMAGE:100004900; FLH184743.01X; RZPDo839B05146D renin binding protein (RENBP) gene, encodes complete protein.
KJ904548 - Synthetic construct Homo sapiens clone ccsbBroadEn_13942 RENBP gene, encodes complete protein.
DQ895471 - Synthetic construct Homo sapiens clone IMAGE:100009931; FLH184739.01L; RZPDo839B05145D renin binding protein (RENBP) gene, encodes complete protein.
AB527578 - Synthetic construct DNA, clone: pF1KB6673, Homo sapiens RENBP gene for renin binding protein, without stop codon, in Flexi system.
LF380773 - JP 2014500723-A/188276: Polycomb-Associated Non-Coding RNAs.
CU677349 - Synthetic construct Homo sapiens gateway clone IMAGE:100017221 5' read RENBP mRNA.
AK298125 - Homo sapiens cDNA FLJ60746 complete cds, highly similar to N-acylglucosamine 2-epimerase (EC 5.1.3.8).
LF380775 - JP 2014500723-A/188278: Polycomb-Associated Non-Coding RNAs.
LF380777 - JP 2014500723-A/188280: Polycomb-Associated Non-Coding RNAs.
JD339085 - Sequence 320109 from Patent EP1572962.
MA616350 - JP 2018138019-A/188276: Polycomb-Associated Non-Coding RNAs.
MA616352 - JP 2018138019-A/188278: Polycomb-Associated Non-Coding RNAs.
MA616354 - JP 2018138019-A/188280: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P51606 (Reactome details) participates in the following event(s):

R-HSA-6803761 RENBP isomerises ManNAc, ManNGc to GlcNAc, GlcNGc
R-HSA-446210 Synthesis of UDP-N-acetyl-glucosamine
R-HSA-446219 Synthesis of substrates in N-glycan biosythesis
R-HSA-446193 Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein
R-HSA-446203 Asparagine N-linked glycosylation
R-HSA-597592 Post-translational protein modification
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: B4DNZ3, ENST00000393700.1, ENST00000393700.2, ENST00000393700.3, ENST00000393700.4, ENST00000393700.5, ENST00000393700.6, ENST00000393700.7, NM_002910, P51606, Q96BI6, RENBP_HUMAN, uc318wbh.1, uc318wbh.2
UCSC ID: ENST00000393700.8_8
RefSeq Accession: NM_002910.6
Protein: P51606 (aka RENBP_HUMAN or RNBP_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.