Human Gene RHOF (ENST00000267205.7_7) from GENCODE V47lift37
  Description: ras homolog family member F, filopodia associated (from RefSeq NM_019034.3)
Gencode Transcript: ENST00000267205.7_7
Gencode Gene: ENSG00000139725.8_12
Transcript (Including UTRs)
   Position: hg19 chr12:122,215,660-122,231,594 Size: 15,935 Total Exon Count: 5 Strand: -
Coding Region
   Position: hg19 chr12:122,217,404-122,231,539 Size: 14,136 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:122,215,660-122,231,594)mRNA (may differ from genome)Protein (211 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: RHOF_HUMAN
DESCRIPTION: RecName: Full=Rho-related GTP-binding protein RhoF; AltName: Full=Rho family GTPase Rif; AltName: Full=Rho in filopodia; Flags: Precursor;
FUNCTION: Plasma membrane-associated small GTPase which cycles between an active GTP-bound and an inactive GDP-bound state. Causes the formation of thin, actin-rich surface projections called filopodia. Functions cooperatively with CDC42 and Rac to generate additional structures, increasing the diversity of actin- based morphology.
SUBCELLULAR LOCATION: Cell membrane; Lipid-anchor; Cytoplasmic side (Potential). Cytoplasm, cytoskeleton.
SIMILARITY: Belongs to the small GTPase superfamily. Rho family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: RHOF
Diseases sorted by gene-association score: charcot-marie-tooth disease, axonal, type 2l (2), malaria (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 10.72 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 64.08 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -29.6055-0.538 Picture PostScript Text
3' UTR -658.201744-0.377 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR005225 - Small_GTP-bd_dom
IPR001806 - Small_GTPase
IPR003578 - Small_GTPase_Rho

Pfam Domains:
PF00025 - ADP-ribosylation factor family
PF00071 - Ras family
PF08477 - Ras of Complex, Roc, domain of DAPkinase

SCOP Domains:
52540 - P-loop containing nucleoside triphosphate hydrolases
53795 - PEP carboxykinase-like

ModBase Predicted Comparative 3D Structure on Q9HBH0
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003924 GTPase activity
GO:0005525 GTP binding

Biological Process:
GO:0007015 actin filament organization
GO:0007264 small GTPase mediated signal transduction
GO:0043312 neutrophil degranulation
GO:0051056 regulation of small GTPase mediated signal transduction

Cellular Component:
GO:0005622 intracellular
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0030667 secretory granule membrane
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  AK000254 - Homo sapiens cDNA FLJ20247 fis, clone COLF6493.
JD380883 - Sequence 361907 from Patent EP1572962.
JD288774 - Sequence 269798 from Patent EP1572962.
JD444729 - Sequence 425753 from Patent EP1572962.
JD306920 - Sequence 287944 from Patent EP1572962.
JD117342 - Sequence 98366 from Patent EP1572962.
JD324923 - Sequence 305947 from Patent EP1572962.
JD107584 - Sequence 88608 from Patent EP1572962.
JD203843 - Sequence 184867 from Patent EP1572962.
JD072079 - Sequence 53103 from Patent EP1572962.
JD239244 - Sequence 220268 from Patent EP1572962.
JD398706 - Sequence 379730 from Patent EP1572962.
JD276921 - Sequence 257945 from Patent EP1572962.
JD063880 - Sequence 44904 from Patent EP1572962.
JD319668 - Sequence 300692 from Patent EP1572962.
JD361405 - Sequence 342429 from Patent EP1572962.
JD429599 - Sequence 410623 from Patent EP1572962.
JD326274 - Sequence 307298 from Patent EP1572962.
JD339037 - Sequence 320061 from Patent EP1572962.
JD435940 - Sequence 416964 from Patent EP1572962.
JD292666 - Sequence 273690 from Patent EP1572962.
JD095818 - Sequence 76842 from Patent EP1572962.
JD121458 - Sequence 102482 from Patent EP1572962.
JD121733 - Sequence 102757 from Patent EP1572962.
JD451763 - Sequence 432787 from Patent EP1572962.
JD476513 - Sequence 457537 from Patent EP1572962.
JD278144 - Sequence 259168 from Patent EP1572962.
JD139059 - Sequence 120083 from Patent EP1572962.
JD318937 - Sequence 299961 from Patent EP1572962.
JD331607 - Sequence 312631 from Patent EP1572962.
JD175521 - Sequence 156545 from Patent EP1572962.
JD407122 - Sequence 388146 from Patent EP1572962.
AF239923 - Homo sapiens Rho family small GTPase (RIF) mRNA, complete cds.
JD100280 - Sequence 81304 from Patent EP1572962.
JD203979 - Sequence 185003 from Patent EP1572962.
JD220195 - Sequence 201219 from Patent EP1572962.
JD341888 - Sequence 322912 from Patent EP1572962.
JD149666 - Sequence 130690 from Patent EP1572962.
JD360622 - Sequence 341646 from Patent EP1572962.
JD479189 - Sequence 460213 from Patent EP1572962.
JD132329 - Sequence 113353 from Patent EP1572962.
AK289482 - Homo sapiens cDNA FLJ75043 complete cds, highly similar to Homo sapiens ras homolog gene family, member F (in filopodia), mRNA.
BC018208 - Homo sapiens ras homolog gene family, member F (in filopodia), mRNA (cDNA clone MGC:8870 IMAGE:3864426), complete cds.
KJ902654 - Synthetic construct Homo sapiens clone ccsbBroadEn_12048 RHOF gene, encodes complete protein.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9HBH0 (Reactome details) participates in the following event(s):

R-HSA-6798743 Exocytosis of secretory granule membrane proteins
R-HSA-195146 Dissociation of Rho GTP:GDP from GDI complex
R-HSA-194894 Rho GTPase:GTP activates downstream effectors
R-HSA-194922 GAPs inactivate Rho GTPase:GTP by hydrolysis
R-HSA-194913 GEFs activate Rho GTPase:GDP
R-HSA-194854 GDIs block activation of Rho GTPase:GDP
R-HSA-6798695 Neutrophil degranulation
R-HSA-194840 Rho GTPase cycle
R-HSA-168249 Innate Immune System
R-HSA-194315 Signaling by Rho GTPases
R-HSA-168256 Immune System
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: ARHF, ENST00000267205.1, ENST00000267205.2, ENST00000267205.3, ENST00000267205.4, ENST00000267205.5, ENST00000267205.6, NM_019034, Q8WVB1, Q9HBH0, Q9NXH6, RHOF_HUMAN, RIF, uc317ijv.1, uc317ijv.2
UCSC ID: ENST00000267205.7_7
RefSeq Accession: NM_019034.3
Protein: Q9HBH0 (aka RHOF_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.