Human Gene RNPEP (ENST00000295640.9_6) from GENCODE V47lift37
  Description: arginyl aminopeptidase, transcript variant 1 (from RefSeq NM_020216.4)
Gencode Transcript: ENST00000295640.9_6
Gencode Gene: ENSG00000176393.11_11
Transcript (Including UTRs)
   Position: hg19 chr1:201,951,776-201,975,271 Size: 23,496 Total Exon Count: 11 Strand: +
Coding Region
   Position: hg19 chr1:201,951,795-201,974,844 Size: 23,050 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:201,951,776-201,975,271)mRNA (may differ from genome)Protein (650 aa)
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-  Comments and Description Text from UniProtKB
  ID: AMPB_HUMAN
DESCRIPTION: RecName: Full=Aminopeptidase B; Short=AP-B; EC=3.4.11.6; AltName: Full=Arginine aminopeptidase; AltName: Full=Arginyl aminopeptidase;
FUNCTION: Exopeptidase which selectively removes arginine and/or lysine residues from the N-terminus of several peptide substrates including Arg(0)-Leu-enkephalin, Arg(0)-Met-enkephalin and Arg(- 1)-Lys(0)-somatostatin-14. Can hydrolyze leukotriene A4 (LTA-4) into leukotriene B4 (LTB-4) (By similarity).
CATALYTIC ACTIVITY: Release of N-terminal Arg and Lys from oligopeptides when P1' is not Pro. Also acts on arylamides of Arg and Lys.
COFACTOR: Binds 1 zinc ion per subunit (By similarity).
SUBCELLULAR LOCATION: Secreted (By similarity).
SIMILARITY: Belongs to the peptidase M1 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: RNPEP
Diseases sorted by gene-association score: carpal tunnel syndrome, familial (2), nerve compression syndrome (2), focal hand dystonia (2), congenital stationary night blindness (1), amyotrophic lateral sclerosis 1 (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 39.66 RPKM in Small Intestine - Terminal Ileum
Total median expression: 918.42 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -3.6019-0.189 Picture PostScript Text
3' UTR -119.10427-0.279 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR016024 - ARM-type_fold
IPR015571 - Pept_M1_aminopeptidase-B
IPR001930 - Peptidase_M1
IPR015211 - Peptidase_M1_C
IPR014782 - Peptidase_M1_N

Pfam Domains:
PF01433 - Peptidase family M1 domain
PF09127 - Leukotriene A4 hydrolase, C-terminal
PF17900 - Peptidase M1 N-terminal domain

SCOP Domains:
48371 - ARM repeat
63737 - Leukotriene A4 hydrolase N-terminal domain
55486 - Metalloproteases ("zincins"), catalytic domain

ModBase Predicted Comparative 3D Structure on Q9H4A4
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004177 aminopeptidase activity
GO:0004301 epoxide hydrolase activity
GO:0008233 peptidase activity
GO:0008235 metalloexopeptidase activity
GO:0008237 metallopeptidase activity
GO:0008270 zinc ion binding
GO:0016787 hydrolase activity
GO:0042277 peptide binding
GO:0046872 metal ion binding
GO:0070006 metalloaminopeptidase activity

Biological Process:
GO:0006508 proteolysis
GO:0043171 peptide catabolic process
GO:0045776 negative regulation of blood pressure

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005886 plasma membrane
GO:0030141 secretory granule
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  LF205364 - JP 2014500723-A/12867: Polycomb-Associated Non-Coding RNAs.
AK129946 - Homo sapiens cDNA FLJ26436 fis, clone KDN02020.
MA440941 - JP 2018138019-A/12867: Polycomb-Associated Non-Coding RNAs.
LF383643 - JP 2014500723-A/191146: Polycomb-Associated Non-Coding RNAs.
AK097372 - Homo sapiens cDNA FLJ40053 fis, clone TBAES2000255, highly similar to AMINOPEPTIDASE B (EC 3.4.11.6).
BC001064 - Homo sapiens arginyl aminopeptidase (aminopeptidase B), mRNA (cDNA clone MGC:2412 IMAGE:2823082), complete cds.
BC012166 - Homo sapiens arginyl aminopeptidase (aminopeptidase B), mRNA (cDNA clone MGC:20408 IMAGE:4636934), complete cds.
AJ242586 - Homo sapiens mRNA for aminopeptidase B (RNPEP gene).
DQ896012 - Synthetic construct Homo sapiens clone IMAGE:100010472; FLH189486.01L; RZPDo839F0964D arginyl aminopeptidase (aminopeptidase B) (RNPEP) gene, encodes complete protein.
EU176398 - Synthetic construct Homo sapiens clone IMAGE:100006483; FLH189493.01X; RZPDo839C03252D arginyl aminopeptidase (aminopeptidase B) (RNPEP) gene, encodes complete protein.
AJ296161 - Homo sapiens partial mRNA for aminopeptidase B (APB gene).
AL390139 - Homo sapiens mRNA; cDNA DKFZp547H084 (from clone DKFZp547H084).
AK026644 - Homo sapiens cDNA: FLJ22991 fis, clone KAT11853, highly similar to HSU49278 Homo sapiens UEV-1 (UBE2V) mRNA.
JD020603 - Sequence 1627 from Patent EP1572962.
JD035464 - Sequence 16488 from Patent EP1572962.
Z36876 - H.sapiens (xs160) mRNA, 389bp.
LF319684 - JP 2014500723-A/127187: Polycomb-Associated Non-Coding RNAs.
LF319682 - JP 2014500723-A/127185: Polycomb-Associated Non-Coding RNAs.
LF319681 - JP 2014500723-A/127184: Polycomb-Associated Non-Coding RNAs.
LF319680 - JP 2014500723-A/127183: Polycomb-Associated Non-Coding RNAs.
LF319679 - JP 2014500723-A/127182: Polycomb-Associated Non-Coding RNAs.
JD417344 - Sequence 398368 from Patent EP1572962.
JD378741 - Sequence 359765 from Patent EP1572962.
JD373443 - Sequence 354467 from Patent EP1572962.
JD527843 - Sequence 508867 from Patent EP1572962.
JD061889 - Sequence 42913 from Patent EP1572962.
JD196945 - Sequence 177969 from Patent EP1572962.
JD187469 - Sequence 168493 from Patent EP1572962.
JD566705 - Sequence 547729 from Patent EP1572962.
JD259961 - Sequence 240985 from Patent EP1572962.
JD167155 - Sequence 148179 from Patent EP1572962.
JD268545 - Sequence 249569 from Patent EP1572962.
MA619220 - JP 2018138019-A/191146: Polycomb-Associated Non-Coding RNAs.
MA555261 - JP 2018138019-A/127187: Polycomb-Associated Non-Coding RNAs.
MA555259 - JP 2018138019-A/127185: Polycomb-Associated Non-Coding RNAs.
MA555258 - JP 2018138019-A/127184: Polycomb-Associated Non-Coding RNAs.
MA555257 - JP 2018138019-A/127183: Polycomb-Associated Non-Coding RNAs.
MA555256 - JP 2018138019-A/127182: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: AMPB_HUMAN, APB, ENST00000295640.1, ENST00000295640.2, ENST00000295640.3, ENST00000295640.4, ENST00000295640.5, ENST00000295640.6, ENST00000295640.7, ENST00000295640.8, NM_020216, Q9BVM9, Q9H1D4, Q9H4A4, Q9NPT7, uc317lmu.1, uc317lmu.2
UCSC ID: ENST00000295640.9_6
RefSeq Accession: NM_020216.4
Protein: Q9H4A4 (aka AMPB_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.