Human Gene ROR2 (ENST00000375708.4_8) from GENCODE V47lift37
  Description: receptor tyrosine kinase like orphan receptor 2, transcript variant 1 (from RefSeq NM_004560.4)
Gencode Transcript: ENST00000375708.4_8
Gencode Gene: ENSG00000169071.15_11
Transcript (Including UTRs)
   Position: hg19 chr9:94,484,883-94,712,510 Size: 227,628 Total Exon Count: 9 Strand: -
Coding Region
   Position: hg19 chr9:94,485,944-94,712,245 Size: 226,302 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:94,484,883-94,712,510)mRNA (may differ from genome)Protein (943 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ROR2_HUMAN
DESCRIPTION: RecName: Full=Tyrosine-protein kinase transmembrane receptor ROR2; EC=2.7.10.1; AltName: Full=Neurotrophic tyrosine kinase, receptor-related 2; Flags: Precursor;
FUNCTION: Tyrosine-protein kinase receptor which may be involved in the early formation of the chondrocytes. It seems to be required for cartilage and growth plate development. Phosphorylates YWHAB, leading to induction of osteogenesis and bone formation.
CATALYTIC ACTIVITY: ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphate.
SUBUNIT: Homodimer; promotes osteogenesis. Binds YWHAB.
SUBCELLULAR LOCATION: Membrane; Single-pass type I membrane protein.
DEVELOPMENTAL STAGE: Expressed at high levels during early embryonic development. The expression levels drop strongly around day 16 and there are only very low levels in adult tissues.
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR.
DISEASE: Defects in ROR2 are a cause of brachydactyly type B1 (BDB1) [MIM:113000]. BDB1 is an autosomal dominant skeletal disorder characterized by hypoplasia/aplasia of distal phalanges and nails. In BDB1 the middle phalanges are short but in addition the terminal phalanges are rudimentary or absent. Both fingers and toes are affected. The thumbs and big toes are usually deformed.
DISEASE: Defects in ROR2 are a cause of Robinow syndrome autosomal recessive (RRS) [MIM:268310]. A recessive form of Robinow syndrome, a disease characterized by short-limb dwarfism, costovertebral segmentation defects and abnormalities of the head, face and external genitalia. The clinical signs are generally far more severe in recessive cases, particularly skeletal abnormalities. All patients with the recessive form suffer from vertebral segmentation abnormalities, resulting in scoliosis and chest deformities. Rib fusions are considered to be characteristic of the autosomal recessive form. Patients can also present brachydactyly, with extensive aplasia/hypoplasia of the phalanges and metacarpals/metatarsals, and brachy-syn-polydactyly of the hands and oligodactyly of the feet.
SIMILARITY: Belongs to the protein kinase superfamily. Tyr protein kinase family. ROR subfamily.
SIMILARITY: Contains 1 FZ (frizzled) domain.
SIMILARITY: Contains 1 Ig-like C2-type (immunoglobulin-like) domain.
SIMILARITY: Contains 1 kringle domain.
SIMILARITY: Contains 1 protein kinase domain.
SEQUENCE CAUTION: Sequence=BAD92391.1; Type=Erroneous initiation;
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/ROR2";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ROR2
Diseases sorted by gene-association score: robinow syndrome, autosomal recessive* (1699), brachydactyly, type b1* (1391), ror2-related disorders* (100), robinow syndrome (41), brachydactyly (34), proximal symphalangism (16), basal cell nevus syndrome (15), tarsal-carpal coalition syndrome (12), autosomal dominant robinow syndrome (9)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 19.33 RPKM in Colon - Sigmoid
Total median expression: 183.46 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -128.70265-0.486 Picture PostScript Text
3' UTR -362.501061-0.342 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR020067 - Frizzled_dom
IPR007110 - Ig-like
IPR013783 - Ig-like_fold
IPR013098 - Ig_I-set
IPR003598 - Ig_sub2
IPR011009 - Kinase-like_dom
IPR000001 - Kringle
IPR013806 - Kringle-like
IPR018056 - Kringle_CS
IPR000719 - Prot_kinase_cat_dom
IPR001245 - Ser-Thr/Tyr_kinase_cat_dom
IPR008266 - Tyr_kinase_AS
IPR020635 - Tyr_kinase_cat_dom
IPR016247 - Tyr_kinase_rcpt_ROR

Pfam Domains:
PF00047 - Immunoglobulin domain
PF00051 - Kringle domain
PF00069 - Protein kinase domain
PF01392 - Fz domain
PF07679 - Immunoglobulin I-set domain
PF07714 - Protein tyrosine and serine/threonine kinase
PF13895 - Immunoglobulin domain
PF13927 - Immunoglobulin domain

SCOP Domains:
48726 - Immunoglobulin
53335 - S-adenosyl-L-methionine-dependent methyltransferases
56112 - Protein kinase-like (PK-like)
57440 - Kringle-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3ZZW - X-ray MuPIT 4GT4 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q01974
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004713 protein tyrosine kinase activity
GO:0004714 transmembrane receptor protein tyrosine kinase activity
GO:0005109 frizzled binding
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0017147 Wnt-protein binding
GO:0031435 mitogen-activated protein kinase kinase kinase binding
GO:0046872 metal ion binding
GO:1904929 coreceptor activity involved in Wnt signaling pathway, planar cell polarity pathway

Biological Process:
GO:0001501 skeletal system development
GO:0001502 cartilage condensation
GO:0001756 somitogenesis
GO:0006468 protein phosphorylation
GO:0007165 signal transduction
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007223 Wnt signaling pathway, calcium modulating pathway
GO:0007224 smoothened signaling pathway
GO:0007254 JNK cascade
GO:0007275 multicellular organism development
GO:0008285 negative regulation of cell proliferation
GO:0014002 astrocyte development
GO:0016055 Wnt signaling pathway
GO:0016310 phosphorylation
GO:0018108 peptidyl-tyrosine phosphorylation
GO:0030154 cell differentiation
GO:0030282 bone mineralization
GO:0030335 positive regulation of cell migration
GO:0030509 BMP signaling pathway
GO:0030538 embryonic genitalia morphogenesis
GO:0030539 male genitalia development
GO:0042472 inner ear morphogenesis
GO:0042733 embryonic digit morphogenesis
GO:0043507 positive regulation of JUN kinase activity
GO:0045165 cell fate commitment
GO:0045651 positive regulation of macrophage differentiation
GO:0045893 positive regulation of transcription, DNA-templated
GO:0051968 positive regulation of synaptic transmission, glutamatergic
GO:0060071 Wnt signaling pathway, planar cell polarity pathway
GO:0060395 SMAD protein signal transduction
GO:0060828 regulation of canonical Wnt signaling pathway
GO:0090090 negative regulation of canonical Wnt signaling pathway
GO:0090263 positive regulation of canonical Wnt signaling pathway
GO:1900020 positive regulation of protein kinase C activity
GO:1905517 macrophage migration

Cellular Component:
GO:0005737 cytoplasm
GO:0005874 microtubule
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0009986 cell surface
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030425 dendrite
GO:0030669 clathrin-coated endocytic vesicle membrane
GO:0043025 neuronal cell body


-  Descriptions from all associated GenBank mRNAs
  BC033697 - Homo sapiens, similar to Tyrosine-protein kinase transmembrane receptor, clone IMAGE:3452470, mRNA.
AB209154 - Homo sapiens mRNA for Tyrosine-protein kinase transmembrane receptor ROR2 precursor variant protein.
M97639 - Human transmembrane receptor (ror2) mRNA, complete cds.
BC126454 - Homo sapiens cDNA clone IMAGE:8992170, containing frame-shift errors.
BC130522 - Homo sapiens receptor tyrosine kinase-like orphan receptor 2, mRNA (cDNA clone MGC:163394 IMAGE:40146553), complete cds.
BC051273 - Homo sapiens receptor tyrosine kinase-like orphan receptor 2, mRNA (cDNA clone IMAGE:6212645).
JD259387 - Sequence 240411 from Patent EP1572962.
JD251308 - Sequence 232332 from Patent EP1572962.
JD488448 - Sequence 469472 from Patent EP1572962.
JD357109 - Sequence 338133 from Patent EP1572962.
JD460264 - Sequence 441288 from Patent EP1572962.
JD358529 - Sequence 339553 from Patent EP1572962.
JD158570 - Sequence 139594 from Patent EP1572962.
JD176786 - Sequence 157810 from Patent EP1572962.
JD192723 - Sequence 173747 from Patent EP1572962.
JD166223 - Sequence 147247 from Patent EP1572962.
JD213982 - Sequence 195006 from Patent EP1572962.
JD376185 - Sequence 357209 from Patent EP1572962.
JD323688 - Sequence 304712 from Patent EP1572962.
DQ599711 - Homo sapiens piRNA piR-37777, complete sequence.
JD213677 - Sequence 194701 from Patent EP1572962.
JD459320 - Sequence 440344 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q01974 (Reactome details) participates in the following event(s):

R-HSA-4551571 WNT5A binds ROR2 and VANGL2
R-HSA-4551570 VANGL2 is phosphorylated in response to WNT5A
R-HSA-5140741 WNT5A binds FZD and ROR receptors
R-HSA-4086400 PCP/CE pathway
R-HSA-5140745 WNT5A-dependent internalization of FZD2, FZD5 and ROR2
R-HSA-3858494 Beta-catenin independent WNT signaling
R-HSA-195721 Signaling by WNT
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000375708.1, ENST00000375708.2, ENST00000375708.3, NM_004560, NTRKR2, Q01974, Q59GF5, Q5SPI5, Q9HAY7, Q9HB61, ROR2_HUMAN, uc318mlk.1, uc318mlk.2
UCSC ID: ENST00000375708.4_8
RefSeq Accession: NM_004560.4
Protein: Q01974 (aka ROR2_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene ROR2:
rob (ROR2-Related Robinow Syndrome)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.