The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
ModBase Predicted Comparative 3D Structure on P40429
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
AK301136 - Homo sapiens cDNA FLJ61175 complete cds, highly similar to SL cytokine precursor. AK130605 - Homo sapiens cDNA FLJ27095 fis, clone SPL04438, highly similar to 60S ribosomal protein L13A. D28409 - Homo sapiens mRNA for highly basic protein 23 kDa, 5'UTR region. BC105605 - Homo sapiens ribosomal protein L13a, mRNA (cDNA clone MGC:111166 IMAGE:6726477), complete cds. BC070223 - Homo sapiens ribosomal protein L13a, mRNA (cDNA clone MGC:88204 IMAGE:6736442), complete cds. AK056837 - Homo sapiens cDNA FLJ32275 fis, clone PROST2000053, moderately similar to 60S RIBOSOMAL PROTEIN L13A. AK291120 - Homo sapiens cDNA FLJ75551 complete cds, highly similar to Homo sapiens ribosomal protein L13a (RPL13A), mRNA. AK297859 - Homo sapiens cDNA FLJ51256 complete cds, highly similar to 60S ribosomal protein L13a. X56932 - H.sapiens mRNA for 23 kD highly basic protein. BC032107 - Homo sapiens ribosomal protein L13a, mRNA (cDNA clone IMAGE:4644246). BC065236 - Homo sapiens ribosomal protein L13a, mRNA (cDNA clone MGC:70840 IMAGE:6161599), complete cds. AF109186 - Homo sapiens FWP004 mRNA, complete cds. BC071921 - Homo sapiens cDNA clone IMAGE:6423605, **** WARNING: chimeric clone ****. BC071929 - Homo sapiens ribosomal protein L13a, mRNA (cDNA clone MGC:88614 IMAGE:5808487), complete cds. BC000514 - Homo sapiens ribosomal protein L13a, mRNA (cDNA clone MGC:8547 IMAGE:2822802), complete cds. BC001675 - Homo sapiens ribosomal protein L13a, mRNA (cDNA clone MGC:2546 IMAGE:2961667), complete cds. BC001836 - Homo sapiens ribosomal protein L13a, mRNA (cDNA clone MGC:4241 IMAGE:2961667), complete cds. AK222747 - Homo sapiens mRNA for ribosomal protein L13a variant, clone: DMC05308. BC062537 - Homo sapiens ribosomal protein L13a, mRNA (cDNA clone MGC:71249 IMAGE:4908022), complete cds. CU687556 - Synthetic construct Homo sapiens gateway clone IMAGE:100022338 5' read RPL13A mRNA. AB529025 - Synthetic construct DNA, clone: pF1KB3388, Homo sapiens RPL13A gene for ribosomal protein L13a, without stop codon, in Flexi system. KJ906094 - Synthetic construct Homo sapiens clone ccsbBroadEn_15764 RPL13A gene, encodes complete protein. EU831542 - Synthetic construct Homo sapiens clone HAIB:100066571; DKFZo004E0718 ribosomal protein L13a protein (RPL13A) gene, encodes complete protein. HQ447707 - Synthetic construct Homo sapiens clone IMAGE:100071035; CCSB013763_03 ribosomal protein L13a (RPL13A) gene, encodes complete protein. KJ893391 - Synthetic construct Homo sapiens clone ccsbBroadEn_02785 RPL13A gene, encodes complete protein. KJ898501 - Synthetic construct Homo sapiens clone ccsbBroadEn_07895 RPL13A gene, encodes complete protein. EU831455 - Synthetic construct Homo sapiens clone HAIB:100066484; DKFZo008E0717 ribosomal protein L13a protein (RPL13A) gene, encodes complete protein. GQ891317 - Homo sapiens clone HEL-S-40a epididymis secretory sperm binding protein mRNA, complete cds. BC013230 - Homo sapiens ribosomal protein L13a, mRNA (cDNA clone IMAGE:3462928). BC004900 - Homo sapiens ribosomal protein L13a, mRNA (cDNA clone IMAGE:3545758), partial cds. JD404540 - Sequence 385564 from Patent EP1572962. AB082924 - Homo sapiens RPL13a mRNA for ribosomal protein L13a, complete cds. JD055804 - Sequence 36828 from Patent EP1572962. JD022836 - Sequence 3860 from Patent EP1572962. U58669 - Human mRNA upregulated during camptothecin-induced apoptosis of U937 cells. JD440407 - Sequence 421431 from Patent EP1572962. JD439403 - Sequence 420427 from Patent EP1572962. JD386490 - Sequence 367514 from Patent EP1572962. JD114343 - Sequence 95367 from Patent EP1572962. JD354504 - Sequence 335528 from Patent EP1572962. JD193902 - Sequence 174926 from Patent EP1572962. JD193903 - Sequence 174927 from Patent EP1572962. JD221952 - Sequence 202976 from Patent EP1572962. BC000847 - Homo sapiens cDNA clone IMAGE:3458102. JD434834 - Sequence 415858 from Patent EP1572962. JD374311 - Sequence 355335 from Patent EP1572962. JD088484 - Sequence 69508 from Patent EP1572962. JD092633 - Sequence 73657 from Patent EP1572962. JD431984 - Sequence 413008 from Patent EP1572962. JD289622 - Sequence 270646 from Patent EP1572962. JD449309 - Sequence 430333 from Patent EP1572962. JD285448 - Sequence 266472 from Patent EP1572962. JD119519 - Sequence 100543 from Patent EP1572962. JD378378 - Sequence 359402 from Patent EP1572962.
Biochemical and Signaling Pathways
Reactome (by CSHL, EBI, and GO)
Protein P40429 (Reactome details) participates in the following event(s):
R-HSA-156832 INF-gamma induced phosphorylation of L13a R-HSA-156826 Dissociation of L13a from the 60s ribosomal subunit R-HSA-156823 Association of phospho-L13a with GAIT element of Ceruloplasmin mRNA R-HSA-72672 The 60S subunit joins the translation initiation complex R-HSA-72673 Release of 40S and 60S subunits from the 80S ribosome R-HSA-72671 eIF5B:GTP is hydrolyzed and released R-HSA-156907 Aminoacyl-tRNA binds to the ribosome at the A-site R-HSA-2408529 Sec-tRNA(Sec):EEFSEC:GTP binds to 80S Ribosome R-HSA-141691 GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex R-HSA-156915 Translocation of ribosome by 3 bases in the 3' direction R-HSA-141671 Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex R-HSA-156912 Peptide transfer from P-site tRNA to the A-site tRNA R-HSA-927832 UPF1 binds an mRNP with a termination codon preceding an Exon Junction Complex R-HSA-927789 Formation of UPF1:eRF3 complex on mRNA with a premature termination codon and no Exon Junction Complex R-HSA-1799332 Nascent polypeptide:mRNA:ribosome complex binds signal recognition particle (SRP) R-HSA-156923 Hydrolysis of eEF1A:GTP R-HSA-5333615 80S:Met-tRNAi:mRNA:SECISBP2:Sec-tRNA(Sec):EEFSEC:GTP is hydrolysed to 80S:Met-tRNAi:mRNA:SECISBP2:Sec and EEFSEC:GDP by EEFSEC R-HSA-141673 GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex R-HSA-927889 SMG1 phosphorylates UPF1 (enhanced by Exon Junction Complex) R-HSA-1799329 Signal peptidase hydrolyzes signal peptide from ribosome-associated nascent protein R-HSA-1799330 The SRP receptor binds the SRP:nascent peptide:ribosome complex R-HSA-1799326 Signal-containing nascent peptide translocates to endoplasmic reticulum R-HSA-156827 L13a-mediated translation R-HSA-72706 GTP hydrolysis and joining of the 60S ribosomal subunit R-HSA-72689 Formation of a pool of free 40S subunits R-HSA-6791226 Major pathway of rRNA processing in the nucleolus and cytosol R-HSA-72613 Eukaryotic Translation Initiation R-HSA-1799339 SRP-dependent cotranslational protein targeting to membrane R-HSA-9010553 Regulation of expression of SLITs and ROBOs R-HSA-72737 Cap-dependent Translation Initiation R-HSA-8868773 rRNA processing in the nucleus and cytosol R-HSA-72766 Translation R-HSA-156902 Peptide chain elongation R-HSA-2408557 Selenocysteine synthesis R-HSA-72764 Eukaryotic Translation Termination R-HSA-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) R-HSA-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) R-HSA-376176 Signaling by ROBO receptors R-HSA-192823 Viral mRNA Translation R-HSA-72312 rRNA processing R-HSA-392499 Metabolism of proteins R-HSA-156842 Eukaryotic Translation Elongation R-HSA-2408522 Selenoamino acid metabolism R-HSA-927802 Nonsense-Mediated Decay (NMD) R-HSA-422475 Axon guidance R-HSA-168273 Influenza Viral RNA Transcription and Replication R-HSA-8953854 Metabolism of RNA R-HSA-71291 Metabolism of nitrogenous molecules R-HSA-1266738 Developmental Biology R-HSA-168255 Influenza Life Cycle R-HSA-1430728 Metabolism R-HSA-168254 Influenza Infection R-HSA-5663205 Infectious disease R-HSA-1643685 Disease
US Server
Sequence and Links to Tools and Databases 
Common Gene Haplotype Alleles 
