Human Gene RPS3AP6 (ENST00000484430.1_2) from GENCODE V47lift37
  Description: ribosomal protein S3A pseudogene 6 (from HGNC RPS3AP6)
Gencode Transcript: ENST00000484430.1_2
Gencode Gene: ENSG00000234797.5_5
Transcript (Including UTRs)
   Position: hg19 chr15:60,060,551-60,061,345 Size: 795 Total Exon Count: 1 Strand: +


Page IndexSequence and LinksPrimersRNA-Seq ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:60,060,551-60,061,345)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaEnsembl
ExonPrimerHGNCPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 918.30 RPKM in Ovary
Total median expression: 16573.17 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  LF323768 - JP 2014500723-A/131271: Polycomb-Associated Non-Coding RNAs.
LF323767 - JP 2014500723-A/131270: Polycomb-Associated Non-Coding RNAs.
JD025523 - Sequence 6547 from Patent EP1572962.
LF323765 - JP 2014500723-A/131268: Polycomb-Associated Non-Coding RNAs.
JD035553 - Sequence 16577 from Patent EP1572962.
DQ581894 - Homo sapiens piRNA piR-50006, complete sequence.
LF323763 - JP 2014500723-A/131266: Polycomb-Associated Non-Coding RNAs.
LF323762 - JP 2014500723-A/131265: Polycomb-Associated Non-Coding RNAs.
JD040787 - Sequence 21811 from Patent EP1572962.
MA559345 - JP 2018138019-A/131271: Polycomb-Associated Non-Coding RNAs.
MA559344 - JP 2018138019-A/131270: Polycomb-Associated Non-Coding RNAs.
MA559342 - JP 2018138019-A/131268: Polycomb-Associated Non-Coding RNAs.
MA559340 - JP 2018138019-A/131266: Polycomb-Associated Non-Coding RNAs.
MA559339 - JP 2018138019-A/131265: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: LF323763, uc322ebw.1
UCSC ID: ENST00000484430.1_2
RefSeq Accession: NM_000014.6

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.