Human Gene RRAS (ENST00000246792.4_7) from GENCODE V47lift37
  Description: RAS related (from RefSeq NM_006270.5)
Gencode Transcript: ENST00000246792.4_7
Gencode Gene: ENSG00000126458.4_9
Transcript (Including UTRs)
   Position: hg19 chr19:50,138,549-50,143,400 Size: 4,852 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg19 chr19:50,138,833-50,143,355 Size: 4,523 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:50,138,549-50,143,400)mRNA (may differ from genome)Protein (218 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: RRAS_HUMAN
DESCRIPTION: RecName: Full=Ras-related protein R-Ras; AltName: Full=p23; Flags: Precursor;
FUNCTION: Regulates the organization of the actin cytoskeleton.
SUBUNIT: Interacts with PLCE1. Interacts (active GTP-bound form preferentially) with RGS14 (By similarity).
INTERACTION: P16333:NCK1; NbExp=3; IntAct=EBI-968703, EBI-389883;
SUBCELLULAR LOCATION: Cell membrane; Lipid-anchor; Cytoplasmic side (By similarity). Note=Inner surface of plasma membrane possibly with attachment requiring acylation of the C-terminal cysteine (By similarity with RAS).
SIMILARITY: Belongs to the small GTPase superfamily. Ras family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: RRAS
Diseases sorted by gene-association score: noonan syndrome 1* (8), juvenile myelomonocytic leukemia* (6), eastern equine encephalitis (6)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 265.70 RPKM in Artery - Tibial
Total median expression: 3728.40 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -16.3045-0.362 Picture PostScript Text
3' UTR -83.40284-0.294 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR005225 - Small_GTP-bd_dom
IPR001806 - Small_GTPase
IPR020849 - Small_GTPase_Ras

Pfam Domains:
PF00025 - ADP-ribosylation factor family
PF00071 - Ras family
PF08477 - Ras of Complex, Roc, domain of DAPkinase

SCOP Domains:
52540 - P-loop containing nucleoside triphosphate hydrolases

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2FN4 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P10301
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003924 GTPase activity
GO:0005515 protein binding
GO:0005525 GTP binding
GO:0019003 GDP binding
GO:0044877 macromolecular complex binding

Biological Process:
GO:0002521 leukocyte differentiation
GO:0007165 signal transduction
GO:0007265 Ras protein signal transduction
GO:0030336 negative regulation of cell migration
GO:0045766 positive regulation of angiogenesis
GO:0051896 regulation of protein kinase B signaling
GO:0060325 face morphogenesis
GO:0070372 regulation of ERK1 and ERK2 cascade

Cellular Component:
GO:0005622 intracellular
GO:0005886 plasma membrane
GO:0005925 focal adhesion
GO:0016020 membrane
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  BC016286 - Homo sapiens related RAS viral (r-ras) oncogene homolog, mRNA (cDNA clone MGC:9452 IMAGE:3910343), complete cds.
LF207658 - JP 2014500723-A/15161: Polycomb-Associated Non-Coding RNAs.
BC016318 - Homo sapiens related RAS viral (r-ras) oncogene homolog, mRNA (cDNA clone MGC:22906 IMAGE:4073829), complete cds.
LF367762 - JP 2014500723-A/175265: Polycomb-Associated Non-Coding RNAs.
LF213740 - JP 2014500723-A/21243: Polycomb-Associated Non-Coding RNAs.
JD417209 - Sequence 398233 from Patent EP1572962.
JD398994 - Sequence 380018 from Patent EP1572962.
JD195434 - Sequence 176458 from Patent EP1572962.
JD241174 - Sequence 222198 from Patent EP1572962.
JD193488 - Sequence 174512 from Patent EP1572962.
JD401157 - Sequence 382181 from Patent EP1572962.
JD116054 - Sequence 97078 from Patent EP1572962.
JD118081 - Sequence 99105 from Patent EP1572962.
JD443608 - Sequence 424632 from Patent EP1572962.
JD321190 - Sequence 302214 from Patent EP1572962.
AF493920 - Homo sapiens Ras family small GTP binding protein R-Ras (RRAS) mRNA, complete cds.
BT006805 - Homo sapiens related RAS viral (r-ras) oncogene homolog mRNA, complete cds.
CR541944 - Homo sapiens full open reading frame cDNA clone RZPDo834A1034D for gene RRAS, related RAS viral (r-ras) oncogene homolog; complete cds, incl. stopcodon.
DQ890730 - Synthetic construct clone IMAGE:100003360; FLH165529.01X; RZPDo839D06160D related RAS viral (r-ras) oncogene homolog (RRAS) gene, encodes complete protein.
DQ892428 - Synthetic construct clone IMAGE:100005058; FLH186246.01X; RZPDo839C0671D related RAS viral (r-ras) oncogene homolog (RRAS) gene, encodes complete protein.
DQ895642 - Synthetic construct Homo sapiens clone IMAGE:100010102; FLH186242.01L; RZPDo839C0661D related RAS viral (r-ras) oncogene homolog (RRAS) gene, encodes complete protein.
CR541967 - Homo sapiens full open reading frame cDNA clone RZPDo834E0934D for gene RRAS, related RAS viral (r-ras) oncogene homolog; complete cds, without stopcodon.
AB528722 - Synthetic construct DNA, clone: pF1KB6983, Homo sapiens RRAS gene for related RAS viral (r-ras) oncogene homolog, without stop codon, in Flexi system.
LF207657 - JP 2014500723-A/15160: Polycomb-Associated Non-Coding RNAs.
JD336909 - Sequence 317933 from Patent EP1572962.
LF367757 - JP 2014500723-A/175260: Polycomb-Associated Non-Coding RNAs.
JD508490 - Sequence 489514 from Patent EP1572962.
JD409409 - Sequence 390433 from Patent EP1572962.
MA603339 - JP 2018138019-A/175265: Polycomb-Associated Non-Coding RNAs.
MA603334 - JP 2018138019-A/175260: Polycomb-Associated Non-Coding RNAs.
MA443235 - JP 2018138019-A/15161: Polycomb-Associated Non-Coding RNAs.
MA449317 - JP 2018138019-A/21243: Polycomb-Associated Non-Coding RNAs.
MA443234 - JP 2018138019-A/15160: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P10301 (Reactome details) participates in the following event(s):

R-HSA-399935 Inactivation of R-Ras by Sema3A-Plexin-A GAP activity
R-HSA-416546 Inactivation of R-Ras by Sema4D-Plexin-B1 GAP activity
R-HSA-442726 Raf activation
R-HSA-399955 SEMA3A-Plexin repulsion signaling by inhibiting Integrin adhesion
R-HSA-416550 Sema4D mediated inhibition of cell attachment and migration
R-HSA-442742 CREB phosphorylation through the activation of Ras
R-HSA-373755 Semaphorin interactions
R-HSA-400685 Sema4D in semaphorin signaling
R-HSA-438064 Post NMDA receptor activation events
R-HSA-422475 Axon guidance
R-HSA-442755 Activation of NMDA receptor and postsynaptic events
R-HSA-1266738 Developmental Biology
R-HSA-112314 Neurotransmitter receptors and postsynaptic signal transmission
R-HSA-112315 Transmission across Chemical Synapses
R-HSA-112316 Neuronal System

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000246792.1, ENST00000246792.2, ENST00000246792.3, NM_006270, P10301, Q6FH12, RRAS_HUMAN, uc317euf.1, uc317euf.2
UCSC ID: ENST00000246792.4_7
RefSeq Accession: NM_006270.5
Protein: P10301 (aka RRAS_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.