Human Gene RSPO1 (ENST00000356545.7_7) from GENCODE V47lift37
  Description: R-spondin 1, transcript variant 2 (from RefSeq NM_001242908.2)
Gencode Transcript: ENST00000356545.7_7
Gencode Gene: ENSG00000169218.14_9
Transcript (Including UTRs)
   Position: hg19 chr1:38,076,951-38,100,564 Size: 23,614 Total Exon Count: 8 Strand: -
Coding Region
   Position: hg19 chr1:38,078,427-38,095,333 Size: 16,907 Coding Exon Count: 5 

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Gene AllelesRNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:38,076,951-38,100,564)mRNA (may differ from genome)Protein (263 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCHuman Cortex Gene ExpressionMalacardsMGIOMIMPubMed
ReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: RSPO1_HUMAN
DESCRIPTION: RecName: Full=R-spondin-1; AltName: Full=Roof plate-specific spondin-1; Short=hRspo1; Flags: Precursor;
FUNCTION: Activator of the beta-catenin signaling cascade, leading to TCF-dependent gene activation. Acts both in the canonical Wnt/beta-catenin-dependent pathway and in non-canonical Wnt signaling pathway, probably by acting as an inhibitor of ZNRF3, an important regulator of the Wnt signaling pathway. Acts as a ligand for frizzled FZD8 and LRP6. May negatively regulate the TGF-beta pathway. Has a essential roles in ovary determination.
SUBUNIT: Interacts with the extracellular domain of FZD8 and LRP6. It however does not form a ternary complex with FZD8 and LRP6. Interacts with WNT1. Binds heparin (By similarity). Interacts with ZNRF3; promoting indirect interaction between ZNRF3 and LGR4 and membrane clearance of ZNRF3.
SUBCELLULAR LOCATION: Secreted (By similarity).
TISSUE SPECIFICITY: Abundantly expressed in adrenal glands, ovary, testis, thyroid and trachea but not in bone marrow, spinal cord, stomach, leukocytes colon, small intestine, prostate, thymus and spleen.
DOMAIN: The FU repeats are required for activation and stabilization of beta-catenin (By similarity).
DISEASE: Defects in RSPO1 are the cause of palmoplantar keratoderma with squamous cell carcinoma of skin and sex reversal (PKKSCC) [MIM:610644]. This recessive syndrome is characterized by XX (female to male) SRY-independent sex reversal, palmoplantar hyperkeratosis and predisposition to squamous cell carcinoma of the skin.
MISCELLANEOUS: Upon injection into mice, it induces rapid onset of crypt cell proliferation involving beta-catenin stabilization. It also displays efficacy in a model of chemotherapy-induced intestinal mucositis suggesting possible therapeutic application in gastrointestinal diseases.
SIMILARITY: Belongs to the R-spondin family.
SIMILARITY: Contains 2 FU (furin-like) repeats.
SIMILARITY: Contains 1 TSP type-1 domain.
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org//Genes/RSPO1ID44137ch1p34.html";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: RSPO1
Diseases sorted by gene-association score: palmoplantar hyperkeratosis with squamous cell carcinoma of skin and sex reversal* (1350), mucositis (14), chemical colitis (11), hermaphroditism (7)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 23.66 RPKM in Uterus
Total median expression: 117.67 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -309.90682-0.454 Picture PostScript Text
3' UTR -459.601405-0.327 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR006212 - Furin_repeat
IPR009030 - Growth_fac_rcpt
IPR000884 - Thrombospondin_1_rpt

Pfam Domains:
PF00090 - Thrombospondin type 1 domain
PF15913 - Furin-like repeat, cysteine-rich

SCOP Domains:
57184 - Growth factor receptor domain
82895 - TSP-1 type 1 repeat

ModBase Predicted Comparative 3D Structure on Q2MKA7
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001664 G-protein coupled receptor binding
GO:0005102 receptor binding
GO:0005515 protein binding
GO:0008201 heparin binding

Biological Process:
GO:0001934 positive regulation of protein phosphorylation
GO:0002090 regulation of receptor internalization
GO:0016055 Wnt signaling pathway
GO:0030177 positive regulation of Wnt signaling pathway
GO:0050896 response to stimulus
GO:0090263 positive regulation of canonical Wnt signaling pathway

Cellular Component:
GO:0005576 extracellular region
GO:0005634 nucleus


-  Descriptions from all associated GenBank mRNAs
  AK098225 - Homo sapiens cDNA FLJ40906 fis, clone UTERU2004698, highly similar to Mus musculus mRNA for thrombospondin type 1 domain.
DQ165084 - Homo sapiens R-spondin isoform 1 mRNA, complete cds.
DQ165085 - Homo sapiens R-spondin isoform 2 mRNA, complete cds.
JD351953 - Sequence 332977 from Patent EP1572962.
JD262441 - Sequence 243465 from Patent EP1572962.
JD431905 - Sequence 412929 from Patent EP1572962.
JD360411 - Sequence 341435 from Patent EP1572962.
BC114966 - Homo sapiens R-spondin homolog (Xenopus laevis), mRNA (cDNA clone MGC:138885 IMAGE:40084277), complete cds.
DQ318235 - Homo sapiens R-spondin 1 (RSPO1) mRNA, complete cds.
JD524879 - Sequence 505903 from Patent EP1572962.
JD098611 - Sequence 79635 from Patent EP1572962.
JD507559 - Sequence 488583 from Patent EP1572962.
JD078442 - Sequence 59466 from Patent EP1572962.
JD137038 - Sequence 118062 from Patent EP1572962.
JD177986 - Sequence 159010 from Patent EP1572962.
JD311053 - Sequence 292077 from Patent EP1572962.
JD482202 - Sequence 463226 from Patent EP1572962.
JD308600 - Sequence 289624 from Patent EP1572962.
JD297423 - Sequence 278447 from Patent EP1572962.
JD554332 - Sequence 535356 from Patent EP1572962.
JD504328 - Sequence 485352 from Patent EP1572962.
JD516289 - Sequence 497313 from Patent EP1572962.
JD546947 - Sequence 527971 from Patent EP1572962.
JD083425 - Sequence 64449 from Patent EP1572962.
JD353866 - Sequence 334890 from Patent EP1572962.
JD060320 - Sequence 41344 from Patent EP1572962.
KJ895991 - Synthetic construct Homo sapiens clone ccsbBroadEn_05385 RSPO1 gene, encodes complete protein.
JD477490 - Sequence 458514 from Patent EP1572962.
JD388669 - Sequence 369693 from Patent EP1572962.
MP005478 - Sequence 23 from Patent WO2018215614.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q2MKA7 (Reactome details) participates in the following event(s):

R-HSA-4641206 RSPOs bind LGRs
R-HSA-4641205 RSPO:LGR binds ZNRF3
R-HSA-4641246 ZNRF3 autoubiquitinates to promote its internalization
R-HSA-4641263 Regulation of FZD by ubiquitination
R-HSA-201681 TCF dependent signaling in response to WNT
R-HSA-195721 Signaling by WNT
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: A2A420, ENST00000356545.1, ENST00000356545.2, ENST00000356545.3, ENST00000356545.4, ENST00000356545.5, ENST00000356545.6, NM_001242908, Q0H8S6, Q14C72, Q2MKA7, Q5T0F2, Q8N7L5, RSPO1_HUMAN, uc317zpo.1, uc317zpo.2
UCSC ID: ENST00000356545.7_7
RefSeq Accession: NM_001242908.2
Protein: Q2MKA7 (aka RSPO1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.