Human Gene SAR1B (ENST00000402673.7_7) from GENCODE V47lift37
  Description: secretion associated Ras related GTPase 1B, transcript variant 2 (from RefSeq NM_016103.4)
Gencode Transcript: ENST00000402673.7_7
Gencode Gene: ENSG00000152700.14_11
Transcript (Including UTRs)
   Position: hg19 chr5:133,936,839-133,968,518 Size: 31,680 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr5:133,942,640-133,959,709 Size: 17,070 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:133,936,839-133,968,518)mRNA (may differ from genome)Protein (198 aa)
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UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: SAR1B_HUMAN
DESCRIPTION: RecName: Full=GTP-binding protein SAR1b; AltName: Full=GTP-binding protein B; Short=GTBPB;
FUNCTION: Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Activated by the guanine nucleotide exchange factor PREB. Involved in the selection of the protein cargo and the assembly of the COPII coat complex.
SUBUNIT: Homodimer. Binds PREB. Part of the COPII coat complex. Binds to the cytoplasmic tails of target proteins in the endoplasmic reticulum (By similarity).
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane; Peripheral membrane protein (By similarity). Golgi apparatus, Golgi stack membrane; Peripheral membrane protein (By similarity). Note=Associated with the endoplasmic reticulum and Golgi stacks, in particular in the juxta-nuclear Golgi region (By similarity).
TISSUE SPECIFICITY: Expressed in many tissues including small intestine, liver, muscle and brain.
DISEASE: Defects in SAR1B are the cause of chylomicron retention disease (CMRD) [MIM:246700]; also known as Anderson disease (ANDD). CMRD is an autosomal recessive disorder of severe fat malabsorption associated with failure to thrive in infancy. The condition is characterized by deficiency of fat-soluble vitamins, low blood cholesterol levels, and a selective absence of chylomicrons from blood. Affected individuals accumulate chylomicron-like particles in membrane-bound compartments of enterocytes, which contain large cytosolic lipid droplets.
SIMILARITY: Belongs to the small GTPase superfamily. SAR1 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: SAR1B
Diseases sorted by gene-association score: chylomicron retention disease* (1711), hypobetalipoproteinemia (9), vitreous detachment (6), hypolipoproteinemia (5)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 22.66 RPKM in Muscle - Skeletal
Total median expression: 415.26 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -37.90119-0.318 Picture PostScript Text
3' UTR -1489.805801-0.257 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR005225 - Small_GTP-bd_dom
IPR006689 - Small_GTPase_ARF/SAR
IPR006687 - Small_GTPase_SAR1

Pfam Domains:
PF00025 - ADP-ribosylation factor family
PF00071 - Ras family
PF01926 - 50S ribosome-binding GTPase
PF08477 - Ras of Complex, Roc, domain of DAPkinase
PF09439 - Signal recognition particle receptor beta subunit

SCOP Domains:
52540 - P-loop containing nucleoside triphosphate hydrolases
53795 - PEP carboxykinase-like

ModBase Predicted Comparative 3D Structure on Q9Y6B6
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003924 GTPase activity
GO:0005525 GTP binding
GO:0046872 metal ion binding

Biological Process:
GO:0002474 antigen processing and presentation of peptide antigen via MHC class I
GO:0006886 intracellular protein transport
GO:0006888 ER to Golgi vesicle-mediated transport
GO:0015031 protein transport
GO:0016192 vesicle-mediated transport
GO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0048208 COPII vesicle coating

Cellular Component:
GO:0005622 intracellular
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0005794 Golgi apparatus
GO:0005829 cytosol
GO:0012507 ER to Golgi transport vesicle membrane
GO:0016020 membrane
GO:0032580 Golgi cisterna membrane


-  Descriptions from all associated GenBank mRNAs
  LF384725 - JP 2014500723-A/192228: Polycomb-Associated Non-Coding RNAs.
AK223452 - Homo sapiens mRNA for SAR1a gene homolog 2 variant, clone: FCC114F05.
AF092130 - Homo sapiens GTP-binding protein Sara mRNA, complete cds.
AF087850 - Homo sapiens GTP binding protein mRNA, complete cds.
AL512710 - Homo sapiens mRNA; cDNA DKFZp434B2017 (from clone DKFZp434B2017).
BC093034 - Homo sapiens SAR1 homolog B (S. cerevisiae), mRNA (cDNA clone MGC:110941 IMAGE:30528518), complete cds.
BC002847 - Homo sapiens SAR1 homolog B (S. cerevisiae), mRNA (cDNA clone MGC:3354 IMAGE:3636540), complete cds.
KJ904742 - Synthetic construct Homo sapiens clone ccsbBroadEn_14136 SAR1B gene, encodes complete protein.
EU832499 - Synthetic construct Homo sapiens clone HAIB:100067528; DKFZo008F0629 SAR1 gene homolog B (S. cerevisiae) protein (SAR1B) gene, encodes complete protein.
EU832580 - Synthetic construct Homo sapiens clone HAIB:100067609; DKFZo004F0630 SAR1 gene homolog B (S. cerevisiae) protein (SAR1B) gene, encodes complete protein.
AB529122 - Synthetic construct DNA, clone: pF1KB4929, Homo sapiens SAR1B gene for SAR1 homolog B, without stop codon, in Flexi system.
MA620302 - JP 2018138019-A/192228: Polycomb-Associated Non-Coding RNAs.
JD022348 - Sequence 3372 from Patent EP1572962.
JD322285 - Sequence 303309 from Patent EP1572962.
JD229307 - Sequence 210331 from Patent EP1572962.
JD095334 - Sequence 76358 from Patent EP1572962.
JD463161 - Sequence 444185 from Patent EP1572962.
JD213197 - Sequence 194221 from Patent EP1572962.
JD542957 - Sequence 523981 from Patent EP1572962.
JD533886 - Sequence 514910 from Patent EP1572962.
JD560975 - Sequence 541999 from Patent EP1572962.
JD165266 - Sequence 146290 from Patent EP1572962.
JD566870 - Sequence 547894 from Patent EP1572962.
JD566869 - Sequence 547893 from Patent EP1572962.
AK056821 - Homo sapiens cDNA FLJ32259 fis, clone PROST1000298, highly similar to GTP-binding protein SAR1b.
JD185905 - Sequence 166929 from Patent EP1572962.
LF325727 - JP 2014500723-A/133230: Polycomb-Associated Non-Coding RNAs.
JD350907 - Sequence 331931 from Patent EP1572962.
JD480886 - Sequence 461910 from Patent EP1572962.
LF325726 - JP 2014500723-A/133229: Polycomb-Associated Non-Coding RNAs.
LF325725 - JP 2014500723-A/133228: Polycomb-Associated Non-Coding RNAs.
MA561304 - JP 2018138019-A/133230: Polycomb-Associated Non-Coding RNAs.
MA561303 - JP 2018138019-A/133229: Polycomb-Associated Non-Coding RNAs.
MA561302 - JP 2018138019-A/133228: Polycomb-Associated Non-Coding RNAs.
JD046416 - Sequence 27440 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9Y6B6 (Reactome details) participates in the following event(s):

R-HSA-203973 Vesicle budding
R-HSA-203977 SAR1 Activation And Membrane Binding
R-HSA-983422 Disassembly of COPII coated vesicle
R-HSA-5694527 Loss of SAR1B GTPase
R-HSA-203979 Coat Assembly
R-HSA-5694522 Inner coat assembly and cargo binding
R-HSA-983426 Capturing cargo and formation of prebudding complex
R-HSA-983425 Recruitment of Sec31p:Sec13p to prebudding complex and formation of COPII vesicle
R-HSA-5694417 SEC16 complex binds SAR1B:GTP:SEC23:SEC24
R-HSA-983424 Budding of COPII coated vesicle
R-HSA-2130731 Formation of COPII vesicle
R-HSA-2213243 Fusion of COPII vesicle with Golgi complex
R-HSA-204008 SEC31:SEC13 and v-SNARE recruitment
R-HSA-204005 COPII-mediated vesicle transport
R-HSA-983170 Antigen Presentation: Folding, assembly and peptide loading of class I MHC
R-HSA-199977 ER to Golgi Anterograde Transport
R-HSA-5694530 Cargo concentration in the ER
R-HSA-983169 Class I MHC mediated antigen processing & presentation
R-HSA-199991 Membrane Trafficking
R-HSA-948021 Transport to the Golgi and subsequent modification
R-HSA-1655829 Regulation of cholesterol biosynthesis by SREBP (SREBF)
R-HSA-1280218 Adaptive Immune System
R-HSA-5653656 Vesicle-mediated transport
R-HSA-446203 Asparagine N-linked glycosylation
R-HSA-2132295 MHC class II antigen presentation
R-HSA-8957322 Metabolism of steroids
R-HSA-168256 Immune System
R-HSA-597592 Post-translational protein modification
R-HSA-556833 Metabolism of lipids
R-HSA-392499 Metabolism of proteins
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: D3DQA4, ENST00000402673.1, ENST00000402673.2, ENST00000402673.3, ENST00000402673.4, ENST00000402673.5, ENST00000402673.6, NM_016103, Q567T4, Q9Y6B6, SAR1B , SAR1B_HUMAN, SARA2 , SARB, uc319bxm.1, uc319bxm.2
UCSC ID: ENST00000402673.7_7
RefSeq Accession: NM_016103.4
Protein: Q9Y6B6 (aka SAR1B_HUMAN or SARB_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene SAR1B:
cmr (Chylomicron Retention Disease)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.