Human Gene SENP7 (ENST00000394095.7_9) from GENCODE V47lift37
  Description: SUMO specific peptidase 7, transcript variant 1 (from RefSeq NM_020654.5)
Gencode Transcript: ENST00000394095.7_9
Gencode Gene: ENSG00000138468.16_12
Transcript (Including UTRs)
   Position: hg19 chr3:101,043,049-101,232,056 Size: 189,008 Total Exon Count: 24 Strand: -
Coding Region
   Position: hg19 chr3:101,044,787-101,231,974 Size: 187,188 Coding Exon Count: 24 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:101,043,049-101,232,056)mRNA (may differ from genome)Protein (1050 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: SENP7_HUMAN
DESCRIPTION: RecName: Full=Sentrin-specific protease 7; EC=3.4.22.68; AltName: Full=SUMO-1-specific protease 2; AltName: Full=Sentrin/SUMO-specific protease SENP7;
FUNCTION: Protease that deconjugates SUMO2 and SUMO3 from targeted proteins, but not SUMO1. Catalyzes the deconjugation of poly-SUMO2 and poly-SUMO3 chains. Has very low efficiency in processing full- length SUMO proteins to their mature forms.
CATALYTIC ACTIVITY: Hydrolysis of the alpha-linked peptide bond in the sequence Gly-Gly-|-Ala-Thr-Tyr at the C-terminal end of the small ubiquitin-like modifier (SUMO) propeptide, Smt3, leading to the mature form of the protein. A second reaction involves the cleavage of an epsilon-linked peptide bond between the C-terminal glycine of the mature SUMO and the lysine epsilon-amino group of the target protein.
SIMILARITY: Belongs to the peptidase C48 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: SENP7
Diseases sorted by gene-association score: malaria (3), stargardt disease (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 13.28 RPKM in Ovary
Total median expression: 295.58 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -31.3082-0.382 Picture PostScript Text
3' UTR -395.401738-0.228 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003653 - Peptidase_C48

Pfam Domains:
PF02902 - Ulp1 protease family, C-terminal catalytic domain

SCOP Domains:
54001 - Cysteine proteinases

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3EAY - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q9BQF6
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004930 G-protein coupled receptor activity
GO:0005515 protein binding
GO:0008233 peptidase activity
GO:0008234 cysteine-type peptidase activity
GO:0016787 hydrolase activity

Biological Process:
GO:0006508 proteolysis
GO:0007188 adenylate cyclase-modulating G-protein coupled receptor signaling pathway

Cellular Component:
GO:0005622 intracellular
GO:0005634 nucleus
GO:0005886 plasma membrane


-  Descriptions from all associated GenBank mRNAs
  AL833577 - Homo sapiens mRNA; cDNA DKFZp686G1056 (from clone DKFZp686G1056).
LF385135 - JP 2014500723-A/192638: Polycomb-Associated Non-Coding RNAs.
AB051494 - Homo sapiens mRNA for KIAA1707 protein, partial cds.
BX537943 - Homo sapiens mRNA; cDNA DKFZp686O19118 (from clone DKFZp686O19118); complete cds.
AL136599 - Homo sapiens mRNA; cDNA DKFZp564G1816 (from clone DKFZp564G1816); complete cds.
BC129988 - Homo sapiens SUMO1/sentrin specific peptidase 7, mRNA (cDNA clone MGC:157730 IMAGE:40128878), complete cds.
AF199458 - Homo sapiens SUMO-1 specific protease 2 (SUSP2) mRNA, complete cds.
AB384626 - Synthetic construct DNA, clone: pF1KA1707, Homo sapiens SENP7 gene for sentrin-specific protease 7, complete cds, without stop codon, in Flexi system.
AM392961 - Synthetic construct Homo sapiens clone IMAGE:100002233 for hypothetical protein (SENP7 gene).
AM392970 - Synthetic construct Homo sapiens clone IMAGE:100002234 for hypothetical protein (SENP7 gene).
AM392620 - Synthetic construct Homo sapiens clone IMAGE:100003085 for hypothetical protein (SENP7 gene).
AM393440 - Synthetic construct Homo sapiens clone IMAGE:100001893 for hypothetical protein (SENP7 gene).
AK297356 - Homo sapiens cDNA FLJ54910 partial cds, highly similar to Sentrin-specific protease 7 (EC 3.4.22.-).
BC062674 - Homo sapiens SUMO1/sentrin specific peptidase 7, mRNA (cDNA clone IMAGE:4688696).
MA620712 - JP 2018138019-A/192638: Polycomb-Associated Non-Coding RNAs.
BC039900 - Homo sapiens SUMO1/sentrin specific peptidase 7, mRNA (cDNA clone IMAGE:5185280), with apparent retained intron.
JD551337 - Sequence 532361 from Patent EP1572962.
JD147342 - Sequence 128366 from Patent EP1572962.
JD498915 - Sequence 479939 from Patent EP1572962.
JD507316 - Sequence 488340 from Patent EP1572962.
JD235259 - Sequence 216283 from Patent EP1572962.
AF217504 - Homo sapiens sentrin/SUMO-specific protease (SENP7) mRNA, complete cds.
JD101042 - Sequence 82066 from Patent EP1572962.
JD377657 - Sequence 358681 from Patent EP1572962.
JD094783 - Sequence 75807 from Patent EP1572962.
JD304712 - Sequence 285736 from Patent EP1572962.
JD507092 - Sequence 488116 from Patent EP1572962.
JD190406 - Sequence 171430 from Patent EP1572962.
JD334713 - Sequence 315737 from Patent EP1572962.
JD052584 - Sequence 33608 from Patent EP1572962.
JD306066 - Sequence 287090 from Patent EP1572962.
JD298010 - Sequence 279034 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A1L3A5, A8MW39, B7WNW8, ENST00000394095.1, ENST00000394095.2, ENST00000394095.3, ENST00000394095.4, ENST00000394095.5, ENST00000394095.6, KIAA1707 , NM_020654, Q7Z3F4, Q96PS5, Q9BQF6, Q9C0F6, Q9HBT5, SENP7 , SENP7_HUMAN, SSP2, SUSP2, uc318wjl.1, uc318wjl.2
UCSC ID: ENST00000394095.7_9
RefSeq Accession: NM_020654.5
Protein: Q9BQF6 (aka SENP7_HUMAN or SEN7_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.