Human Gene SERAC1 (ENST00000647468.2_8) from GENCODE V47lift37
  Description: serine active site containing 1, transcript variant 1 (from RefSeq NM_032861.4)
Gencode Transcript: ENST00000647468.2_8
Gencode Gene: ENSG00000122335.17_13
Transcript (Including UTRs)
   Position: hg19 chr6:158,530,551-158,589,294 Size: 58,744 Total Exon Count: 17 Strand: -
Coding Region
   Position: hg19 chr6:158,532,398-158,579,395 Size: 46,998 Coding Exon Count: 16 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesGeneReviewsModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:158,530,551-158,589,294)mRNA (may differ from genome)Protein (654 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: SRAC1_HUMAN
DESCRIPTION: RecName: Full=Protein SERAC1; AltName: Full=Serine active site-containing protein 1;
FUNCTION: Plays an important role in the phosphatidylglycerol remodeling that is essential for both mitochondrial function and intracellular cholesterol trafficking. May catalyze the remodeling of phosphatidylglycerol and be involved in the transacylation- acylation reaction to produce phosphatidylglycerol-36:1. May be involved in bis(monoacylglycerol)phosphate biosynthetic pathway.
SUBCELLULAR LOCATION: Membrane; Single-pass membrane protein (Potential). Endoplasmic reticulum. Mitochondrion. Note=Localizes at the endoplasmic reticulum and at the endoplasmic reticulum- mitochondria interface.
TISSUE SPECIFICITY: Widely expressed, with predominant expression in fetal skeletal muscle and adult brain. In the brain, highest levels are found in the frontal and occipital cortices, cerebellum and hippocampus.
DISEASE: Defects in SERAC1 are the cause of 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome (MEGDEL) [MIM:614739]. An autosomal recessive disorder characterized by childhood onset of delayed psychomotor development or psychomotor regression, sensorineural deafness, spasticity or dystonia, and increased excretion of 3- methylglutaconic acid. Brain imaging shows cerebral and cerebellar atrophy as well as lesions in the basal ganglia reminiscent of Leigh syndrome. Laboratory studies show increased serum lactate and alanine, mitochondrial oxidative phosphorylation defects, abnormal mitochondria, abnormal phosphatidylglycerol and cardiolipin profiles in fibroblasts, and abnormal accumulation of unesterified cholesterol within cells.
SIMILARITY: Belongs to the SERAC1 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: SERAC1
Diseases sorted by gene-association score: 3-methylglutaconic aciduria with deafness, encephalopathy, and leigh-like syndrome* (1702), leigh-like syndrome (50), 3-methylglutaconic aciduria (35), 3-methylglutaconic aciduria, type iv (26), encephalopathy (13), sengers syndrome (10), 3-methylglutaconic aciduria, type v (10), 3-methylglutaconic aciduria, type iii (7), 3-methylglutaconic aciduria, type i (6), organic acidemia (5), leigh syndrome (2), mitochondrial metabolism disease (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -59.50124-0.480 Picture PostScript Text
3' UTR -465.001847-0.252 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011989 - ARM-like
IPR016024 - ARM-type_fold
IPR012908 - PGAP1-like

SCOP Domains:
48371 - ARM repeat
53474 - alpha/beta-Hydrolases

ModBase Predicted Comparative 3D Structure on Q96JX3
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003674 molecular_function

Biological Process:
GO:0006629 lipid metabolic process
GO:0008654 phospholipid biosynthetic process
GO:0032367 intracellular cholesterol transport
GO:0036148 phosphatidylglycerol acyl-chain remodeling

Cellular Component:
GO:0005739 mitochondrion
GO:0005783 endoplasmic reticulum
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0044233 ER-mitochondrion membrane contact site


-  Descriptions from all associated GenBank mRNAs
  LF385157 - JP 2014500723-A/192660: Polycomb-Associated Non-Coding RNAs.
BC001705 - Homo sapiens serine active site containing 1, mRNA (cDNA clone MGC:3108 IMAGE:3350731), complete cds.
BC060795 - Homo sapiens serine active site containing 1, mRNA (cDNA clone IMAGE:5259397), partial cds.
AK023656 - Homo sapiens cDNA FLJ13594 fis, clone PLACE1009539.
BX648104 - Homo sapiens mRNA; cDNA DKFZp686P2027 (from clone DKFZp686P2027).
JD308271 - Sequence 289295 from Patent EP1572962.
AK027823 - Homo sapiens cDNA FLJ14917 fis, clone PLACE1007112.
JD556488 - Sequence 537512 from Patent EP1572962.
AK125878 - Homo sapiens cDNA FLJ43890 fis, clone TESTI4009406.
LF340050 - JP 2014500723-A/147553: Polycomb-Associated Non-Coding RNAs.
JD502237 - Sequence 483261 from Patent EP1572962.
JD284591 - Sequence 265615 from Patent EP1572962.
JD213943 - Sequence 194967 from Patent EP1572962.
JD044157 - Sequence 25181 from Patent EP1572962.
JD171008 - Sequence 152032 from Patent EP1572962.
JD067613 - Sequence 48637 from Patent EP1572962.
JD299874 - Sequence 280898 from Patent EP1572962.
JD563467 - Sequence 544491 from Patent EP1572962.
KJ899851 - Synthetic construct Homo sapiens clone ccsbBroadEn_09245 SERAC1 gene, encodes complete protein.
BC048335 - Homo sapiens serine active site containing 1, mRNA (cDNA clone IMAGE:5213992), containing frame-shift errors.
LF340055 - JP 2014500723-A/147558: Polycomb-Associated Non-Coding RNAs.
LF340061 - JP 2014500723-A/147564: Polycomb-Associated Non-Coding RNAs.
BC028594 - Homo sapiens serine active site containing 1, mRNA (cDNA clone IMAGE:4824353), complete cds.
JD476287 - Sequence 457311 from Patent EP1572962.
MA620734 - JP 2018138019-A/192660: Polycomb-Associated Non-Coding RNAs.
MA575627 - JP 2018138019-A/147553: Polycomb-Associated Non-Coding RNAs.
MA575632 - JP 2018138019-A/147558: Polycomb-Associated Non-Coding RNAs.
MA575638 - JP 2018138019-A/147564: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000647468.1, NM_032861, Q49AT1, Q5VTX3, Q6PKF3, Q96JX3, SRAC1_HUMAN, uc328nni.1, uc328nni.2
UCSC ID: ENST00000647468.2_8
RefSeq Accession: NM_032861.4
Protein: Q96JX3 (aka SRAC1_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene SERAC1:
megdel (SERAC1 Deficiency)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.