Human Gene SERPING1 (ENST00000278407.9_6) from GENCODE V47lift37
  Description: serpin family G member 1, transcript variant 2 (from RefSeq NM_001032295.2)
Gencode Transcript: ENST00000278407.9_6
Gencode Gene: ENSG00000149131.17_12
Transcript (Including UTRs)
   Position: hg19 chr11:57,365,158-57,382,321 Size: 17,164 Total Exon Count: 8 Strand: +
Coding Region
   Position: hg19 chr11:57,365,744-57,382,054 Size: 16,311 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:57,365,158-57,382,321)mRNA (may differ from genome)Protein (500 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: IC1_HUMAN
DESCRIPTION: RecName: Full=Plasma protease C1 inhibitor; Short=C1 Inh; Short=C1Inh; AltName: Full=C1 esterase inhibitor; AltName: Full=C1-inhibiting factor; AltName: Full=Serpin G1; Flags: Precursor;
FUNCTION: Activation of the C1 complex is under control of the C1- inhibitor. It forms a proteolytically inactive stoichiometric complex with the C1r or C1s proteases. May play a potentially crucial role in regulating important physiological pathways including complement activation, blood coagulation, fibrinolysis and the generation of kinins. Very efficient inhibitor of FXIIa. Inhibits chymotrypsin and kallikrein.
SUBUNIT: Binds to E.coli stcE which allows localization of SERPING1 to cell membranes thus protecting the bacteria against complement-mediated lysis. Interacts with MASP1.
SUBCELLULAR LOCATION: Secreted.
PTM: Highly glycosylated (49%) with N- and O-glycosylation. O- glycosylated with core 1 or possibly core 8 glycans. N-glycan heterogeneity at Asn-25: Hex5HexNAc4 (minor), dHex1Hex5HexNAc4 (minor), Hex6HexNAc5 (major) and dHex1Hex6HexNAc5 (minor).
PTM: Can be proteolytically cleaved by E.coli stcE.
POLYMORPHISM: Chymotrypsin uses Ala-465 as its reactive site in normal plasma protease C1 inhibitor, and His-466 as its reactive site in the variant His-466.
DISEASE: Defects in SERPING1 are the cause of hereditary angioedema (HAE) [MIM:106100]; also called hereditary angioneurotic edema (HANE). HAE is an autosomal dominant disorder characterized by episodic local subcutaneous edema and submucosal edema involving the upper respiratory and gastrointestinal tracts. HAE due to C1 esterase inhibitor deficiency is comprised of two clinically indistinguishable forms. In HAE type 1, representing 85% of patients, serum levels of C1 esterase inhibitor are less than 35% of normal. In HAE type 2, the levels are normal or elevated, but the protein is non-functional.
SIMILARITY: Belongs to the serpin family.
SEQUENCE CAUTION: Sequence=AAA53096.1; Type=Erroneous gene model prediction;
WEB RESOURCE: Name=Wikipedia; Note=C1-inhibitor entry; URL="http://en.wikipedia.org/wiki/C1-inhibitor";
WEB RESOURCE: Name=SERPING1base; Note=SERPING1 mutation db; URL="http://bioinf.uta.fi/SERPING1base/";
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/SERPING1";
WEB RESOURCE: Name=SeattleSNPs; URL="http://pga.gs.washington.edu/data/serping1/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: SERPING1
Diseases sorted by gene-association score: angioedema, hereditary, types i and ii* (1550), complement component 4, partial deficiency of* (850), hereditary angioedema* (565), angioedema (42), c1 inhibitor deficiency (28), acquired angioedema (18), capillary disease (12), allergic urticaria (11), pseudomembranous conjunctivitis (7), melkersson-rosenthal syndrome (7), complement deficiency (7), hydrops, lactic acidosis, and sideroblastic anemia (6), urticaria (6), louse-borne relapsing fever (5), macular degeneration, age-related, 1 (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 646.23 RPKM in Liver
Total median expression: 8407.22 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -15.5060-0.258 Picture PostScript Text
3' UTR -82.80267-0.310 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR015553 - Protease_inhib_I4_serpin_C1
IPR023795 - Protease_inhib_I4_serpin_CS
IPR023796 - Serpin_dom
IPR000215 - Serpin_fam

Pfam Domains:
PF00079 - Serpin (serine protease inhibitor)

SCOP Domains:
56574 - Serpins

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1M6Q - Model 2OAY - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P05155
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004867 serine-type endopeptidase inhibitor activity
GO:0005515 protein binding
GO:0030414 peptidase inhibitor activity

Biological Process:
GO:0001869 negative regulation of complement activation, lectin pathway
GO:0002376 immune system process
GO:0002576 platelet degranulation
GO:0006958 complement activation, classical pathway
GO:0007568 aging
GO:0007596 blood coagulation
GO:0007597 blood coagulation, intrinsic pathway
GO:0007599 hemostasis
GO:0008015 blood circulation
GO:0010466 negative regulation of peptidase activity
GO:0010951 negative regulation of endopeptidase activity
GO:0030193 regulation of blood coagulation
GO:0030449 regulation of complement activation
GO:0042730 fibrinolysis
GO:0045087 innate immune response
GO:0045916 negative regulation of complement activation

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0031093 platelet alpha granule lumen
GO:0070062 extracellular exosome
GO:0072562 blood microparticle


-  Descriptions from all associated GenBank mRNAs
  AK303809 - Homo sapiens cDNA FLJ58826 complete cds, highly similar to Plasma protease C1 inhibitor precursor.
JD080382 - Sequence 61406 from Patent EP1572962.
AK312626 - Homo sapiens cDNA, FLJ93010, highly similar to Homo sapiens serine (or cysteine) proteinase inhibitor, clade G (C1inhibitor), member 1, (angioedema, hereditary) (SERPING1), mRNA.
JD493864 - Sequence 474888 from Patent EP1572962.
JD155989 - Sequence 137013 from Patent EP1572962.
AK303840 - Homo sapiens cDNA FLJ58564 complete cds, highly similar to Plasma protease C1 inhibitor precursor.
AK293054 - Homo sapiens cDNA FLJ78023 complete cds, highly similar to Homo sapiens serine (or cysteine) proteinase inhibitor, clade G (C1inhibitor), member 1, (angioedema, hereditary) (SERPING1), mRNA.
AB209826 - Homo sapiens mRNA for Plasma protease C1 inhibitor precursor variant protein.
M13656 - Human plasma protease (C1) inhibitor mRNA, complete cds.
M13690 - Human plasma protease (C1) inhibitor mRNA, complete cds.
GU727623 - Homo sapiens epididymis tissue protein Li 173 mRNA, complete cds.
BC011171 - Homo sapiens serpin peptidase inhibitor, clade G (C1 inhibitor), member 1, mRNA (cDNA clone MGC:17091 IMAGE:4150091), complete cds.
GQ891530 - Homo sapiens clone HEL-S-251 epididymis secretory sperm binding protein mRNA, complete cds.
AB590526 - Synthetic construct DNA, clone: pFN21AE1413, Homo sapiens SERPING1 gene for serpin peptidase inhibitor, clade G (C1 inhibitor), member 1, without stop codon, in Flexi system.
KU177948 - Homo sapiens serpin peptidase inhibitor clade G member 1 isoform 1 (SERPING1) mRNA, partial cds.
KU177949 - Homo sapiens serpin peptidase inhibitor clade G member 1 isoform 2 (SERPING1) mRNA, complete cds, alternatively spliced.
KU177950 - Homo sapiens serpin peptidase inhibitor clade G member 1 isoform 3 (SERPING1) mRNA, complete cds, alternatively spliced.
KU177951 - Homo sapiens serpin peptidase inhibitor clade G member 1 isoform 4 (SERPING1) mRNA, partial cds, alternatively spliced.
BT006966 - Homo sapiens serine (or cysteine) proteinase inhibitor, clade G (C1 inhibitor), member 1, (angioedema, hereditary) mRNA, complete cds.
DQ891799 - Synthetic construct clone IMAGE:100004429; FLH180039.01X; RZPDo839F03132D serpin peptidase inhibitor, clade G (C1 inhibitor), member 1, (angioedema, hereditary) (SERPING1) gene, encodes complete protein.
DQ894982 - Synthetic construct Homo sapiens clone IMAGE:100009442; FLH180036.01L; RZPDo839F03131D serpin peptidase inhibitor, clade G (C1 inhibitor), member 1, (angioedema, hereditary) (SERPING1) gene, encodes complete protein.
KJ896516 - Synthetic construct Homo sapiens clone ccsbBroadEn_05910 SERPING1 gene, encodes complete protein.
KR709365 - Synthetic construct Homo sapiens clone CCSBHm_00001107 SERPING1 (SERPING1) mRNA, encodes complete protein.
KR709366 - Synthetic construct Homo sapiens clone CCSBHm_00001138 SERPING1 (SERPING1) mRNA, encodes complete protein.
KR709367 - Synthetic construct Homo sapiens clone CCSBHm_00001147 SERPING1 (SERPING1) mRNA, encodes complete protein.
KR709368 - Synthetic construct Homo sapiens clone CCSBHm_00001218 SERPING1 (SERPING1) mRNA, encodes complete protein.
KR712221 - Synthetic construct Homo sapiens clone CCSBHm_00900175 SERPING1 (SERPING1) mRNA, encodes complete protein.
AY732485 - Homo sapiens serine/cysteine proteinase inhibitor clade G member 1 splice variant 2 (SERPING1) mRNA, partial cds, alternatively spliced.
AY732486 - Homo sapiens serine/cysteine proteinase inhibitor clade G member 1 splice variant 3 (SERPING1) mRNA, complete cds, alternatively spliced.
LC420309 - Homo sapiens SERPING1 mRNA for serpin peptidase inhibitor clade G member 1, complete cds.
X07577 - Human mRNA for C1 inhibitor.
M14036 - Human C1 inhibitor mRNA, 3' end.
M13203 - Human first component of complement (C1) inhibitor mRNA.
JD374499 - Sequence 355523 from Patent EP1572962.
JD240092 - Sequence 221116 from Patent EP1572962.
JD524929 - Sequence 505953 from Patent EP1572962.
JD348527 - Sequence 329551 from Patent EP1572962.
JD272563 - Sequence 253587 from Patent EP1572962.
JD540069 - Sequence 521093 from Patent EP1572962.
JD189529 - Sequence 170553 from Patent EP1572962.
JD244464 - Sequence 225488 from Patent EP1572962.
JD303787 - Sequence 284811 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_intrinsicPathway - Intrinsic Prothrombin Activation Pathway

Reactome (by CSHL, EBI, and GO)

Protein P05155 (Reactome details) participates in the following event(s):

R-HSA-158357 factor XIIa + C1Inh -> factor XIIa:C1Inh
R-HSA-158399 kallikrein + C1Inh -> kallikrein:C1Inh
R-HSA-8852266 C1-Inh binds Antigen: antibody: C1 complex activated C1r, C1s
R-HSA-481007 Exocytosis of platelet alpha granule contents
R-HSA-9021306 C1-Inh binds and inactivates C1r, C1s
R-HSA-8852481 Antigen:IgG:C1Q:2xActivated C1R:SERPING1:2xActivated C1S:SERPING1 dissociates
R-HSA-140837 Intrinsic Pathway of Fibrin Clot Formation
R-HSA-977606 Regulation of Complement cascade
R-HSA-114608 Platelet degranulation
R-HSA-140877 Formation of Fibrin Clot (Clotting Cascade)
R-HSA-166658 Complement cascade
R-HSA-76005 Response to elevated platelet cytosolic Ca2+
R-HSA-109582 Hemostasis
R-HSA-168249 Innate Immune System
R-HSA-76002 Platelet activation, signaling and aggregation
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: A6NMU0, A8KAI9, B2R6L5, B4E1F0, B4E1H2, C1IN, C1NH, ENST00000278407.1, ENST00000278407.2, ENST00000278407.3, ENST00000278407.4, ENST00000278407.5, ENST00000278407.6, ENST00000278407.7, ENST00000278407.8, IC1_HUMAN, NM_001032295, P05155, Q16304, Q547W3, Q59EI5, Q7Z455, Q96FE0, Q9UC49, Q9UCF9, uc317joq.1, uc317joq.2
UCSC ID: ENST00000278407.9_6
RefSeq Accession: NM_000062.3
Protein: P05155 (aka IC1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.