Human Gene SFRP4 (ENST00000436072.7_7) from GENCODE V47lift37
  Description: secreted frizzled related protein 4 (from RefSeq NM_003014.4)
Gencode Transcript: ENST00000436072.7_7
Gencode Gene: ENSG00000106483.12_11
Transcript (Including UTRs)
   Position: hg19 chr7:37,945,534-37,956,419 Size: 10,886 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg19 chr7:37,947,081-37,956,139 Size: 9,059 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:37,945,534-37,956,419)mRNA (may differ from genome)Protein (346 aa)
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-  Comments and Description Text from UniProtKB
  ID: SFRP4_HUMAN
DESCRIPTION: RecName: Full=Secreted frizzled-related protein 4; Short=sFRP-4; AltName: Full=Frizzled protein, human endometrium; Short=FrpHE; Flags: Precursor;
FUNCTION: Soluble frizzled-related proteins (sFRPS) function as modulators of Wnt signaling through direct interaction with Wnts. They have a role in regulating cell growth and differentiation in specific cell types. SFRP4 may act as a regulator of adult uterine morphology and function. Increases apoptosis during ovulation possibly through modulation of FZ1/FZ4/WNT4 signaling (By similarity). Has phosphaturic effects by specifically inhibiting sodium-dependent phosphate uptake.
SUBCELLULAR LOCATION: Secreted. Note=Cytoplasmic in ovarian tumor cells.
TISSUE SPECIFICITY: Expressed in mesenchymal cells. Highly expressed in the stroma of proliferative endometrium. Expressed in cardiomyocytes. Shows moderate to strong expression in ovarian tumors with expression increasing as the tumor stage increases. In ovarian tumors, expression levels are inversely correlated with expression of CTNNB1 (at protein level).
INDUCTION: Increased levels in failing myocardium. Up-regulated in several tumor types including ostomalacia-associated tumors and endometrial and breast carcinomas.
DOMAIN: The FZ domain is involved in binding with Wnt ligands (By similarity).
SIMILARITY: Belongs to the secreted frizzled-related protein (sFRP) family.
SIMILARITY: Contains 1 FZ (frizzled) domain.
SIMILARITY: Contains 1 NTR domain.
SEQUENCE CAUTION: Sequence=BAG63683.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: SFRP4
Diseases sorted by gene-association score: pyle disease* (1283), osteomalacia (17), hypophosphatemic rickets, autosomal dominant (16), hypophosphatemia (14), oncogenic osteomalacia (9), squamous cell papilloma (9), oral submucous fibrosis (6), esophageal basaloid squamous cell carcinoma (6), hypophosphatemic rickets, x-linked dominant (5), hypophosphatemic rickets with hypercalciuria (4)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 213.96 RPKM in Cervix - Endocervix
Total median expression: 688.46 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -136.90280-0.489 Picture PostScript Text
3' UTR -359.701547-0.233 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR015526 - Frizzled/SFRP
IPR020067 - Frizzled_dom
IPR001134 - Netrin_domain
IPR018933 - Netrin_module_non-TIMP
IPR026560 - SFRP4
IPR008993 - TIMP-like_OB-fold

Pfam Domains:
PF01392 - Fz domain
PF01759 - UNC-6/NTR/C345C module

SCOP Domains:
63501 - Frizzled cysteine-rich domain
50242 - TIMP-like

ModBase Predicted Comparative 3D Structure on Q6FHJ7
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004930 G-protein coupled receptor activity
GO:0005515 protein binding
GO:0017147 Wnt-protein binding
GO:0042813 Wnt-activated receptor activity

Biological Process:
GO:0002092 positive regulation of receptor internalization
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007275 multicellular organism development
GO:0008285 negative regulation of cell proliferation
GO:0009725 response to hormone
GO:0010628 positive regulation of gene expression
GO:0016055 Wnt signaling pathway
GO:0030154 cell differentiation
GO:0030178 negative regulation of Wnt signaling pathway
GO:0030510 regulation of BMP signaling pathway
GO:0035567 non-canonical Wnt signaling pathway
GO:0043065 positive regulation of apoptotic process
GO:0043433 negative regulation of sequence-specific DNA binding transcription factor activity
GO:0045606 positive regulation of epidermal cell differentiation
GO:0055062 phosphate ion homeostasis
GO:0060349 bone morphogenesis
GO:0090090 negative regulation of canonical Wnt signaling pathway
GO:0090263 positive regulation of canonical Wnt signaling pathway
GO:1902174 positive regulation of keratinocyte apoptotic process
GO:2000051 negative regulation of non-canonical Wnt signaling pathway
GO:2000119 negative regulation of sodium-dependent phosphate transport

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0009986 cell surface
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  AF026692 - Homo sapiens frizzled related protein frpHE mRNA, complete cds.
JD147316 - Sequence 128340 from Patent EP1572962.
JD237680 - Sequence 218704 from Patent EP1572962.
JD053029 - Sequence 34053 from Patent EP1572962.
JD146034 - Sequence 127058 from Patent EP1572962.
JD110114 - Sequence 91138 from Patent EP1572962.
JD064213 - Sequence 45237 from Patent EP1572962.
JD372683 - Sequence 353707 from Patent EP1572962.
JD429976 - Sequence 411000 from Patent EP1572962.
BC047684 - Homo sapiens secreted frizzled-related protein 4, mRNA (cDNA clone MGC:51861 IMAGE:5742936), complete cds.
BC032828 - Homo sapiens secreted frizzled-related protein 4, mRNA (cDNA clone IMAGE:4828181), containing frame-shift errors.
BC058911 - Homo sapiens secreted frizzled-related protein 4, mRNA (cDNA clone MGC:65015 IMAGE:5228231), complete cds.
AK302357 - Homo sapiens cDNA FLJ60957 complete cds, highly similar to Secreted frizzled-related protein 4 precursor.
JD240987 - Sequence 222011 from Patent EP1572962.
AK303977 - Homo sapiens cDNA FLJ53955 complete cds, highly similar to Secreted frizzled-related protein 4 precursor.
JD292898 - Sequence 273922 from Patent EP1572962.
JD092188 - Sequence 73212 from Patent EP1572962.
JD486261 - Sequence 467285 from Patent EP1572962.
JD235999 - Sequence 217023 from Patent EP1572962.
JD363722 - Sequence 344746 from Patent EP1572962.
JD272184 - Sequence 253208 from Patent EP1572962.
JD410418 - Sequence 391442 from Patent EP1572962.
DQ420628 - Homo sapiens secreted frizzled-related protein 4 (SFRP4) mRNA, complete cds.
CR541731 - Homo sapiens full open reading frame cDNA clone RZPDo834D1129D for gene SFRP4, secreted frizzled-related protein 4; complete cds, incl. stopcodon.
AK313029 - Homo sapiens cDNA, FLJ93500.
KJ897542 - Synthetic construct Homo sapiens clone ccsbBroadEn_06936 SFRP4 gene, encodes complete protein.
BT019679 - Homo sapiens secreted frizzled-related protein 4 mRNA, complete cds.
CR541755 - Homo sapiens full open reading frame cDNA clone RZPDo834G1129D for gene SFRP4, secreted frizzled-related protein 4; complete cds, without stopcodon.
CU691332 - Synthetic construct Homo sapiens gateway clone IMAGE:100021706 5' read SFRP4 mRNA.
JD175280 - Sequence 156304 from Patent EP1572962.
JD399329 - Sequence 380353 from Patent EP1572962.
JD404547 - Sequence 385571 from Patent EP1572962.
JD191176 - Sequence 172200 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B4DYC1, ENST00000436072.1, ENST00000436072.2, ENST00000436072.3, ENST00000436072.4, ENST00000436072.5, ENST00000436072.6, FRPHE, NM_003014, O14877, Q05BG7, Q1ZYW2, Q4G124, Q6FHJ7, Q6FHM0, Q6PD64, SFRP4_HUMAN, uc320elr.1, uc320elr.2
UCSC ID: ENST00000436072.7_7
RefSeq Accession: NM_003014.4
Protein: Q6FHJ7 (aka SFRP4_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.