Human Gene SH3BP5 (ENST00000383791.8_7) from GENCODE V47lift37
  Description: SH3 domain binding protein 5, transcript variant 1 (from RefSeq NM_004844.5)
Gencode Transcript: ENST00000383791.8_7
Gencode Gene: ENSG00000131370.16_14
Transcript (Including UTRs)
   Position: hg19 chr3:15,295,860-15,374,093 Size: 78,234 Total Exon Count: 9 Strand: -
Coding Region
   Position: hg19 chr3:15,297,593-15,373,915 Size: 76,323 Coding Exon Count: 9 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:15,295,860-15,374,093)mRNA (may differ from genome)Protein (455 aa)
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-  Comments and Description Text from UniProtKB
  ID: 3BP5_HUMAN
DESCRIPTION: RecName: Full=SH3 domain-binding protein 5; Short=SH3BP-5; AltName: Full=SH3 domain-binding protein that preferentially associates with BTK;
FUNCTION: Inhibits the auto- and transphosphorylation activity of BTK. Plays a negative regulatory role in BTK-related cytoplasmic signaling in B-cells. May be involved in BCR-induced apoptotic cell death.
SUBUNIT: Interacts with BTK. Interacts with all isoforms of MAPK8, MAPK9, MAPK10 and MAPK12.
INTERACTION: Q06187:BTK; NbExp=4; IntAct=EBI-624860, EBI-624835;
SUBCELLULAR LOCATION: Mitochondrion.
TISSUE SPECIFICITY: Highly expressed in testis and ovaries. It is also expressed in a variety of tissues including spleen, lymph node, thymus, bone marrow, fetal liver, colon, small intestine and prostate.
SIMILARITY: Belongs to the SH3BP5 family.
SEQUENCE CAUTION: Sequence=BAA25922.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: SH3BP5
Diseases sorted by gene-association score: endocardium disease (12), agammaglobulinemia, x-linked 1 (10), tabes dorsalis (8), bursitis (7), causalgia (7), tertiary neurosyphilis (6), paralytic squint (5)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 64.85 RPKM in Ovary
Total median expression: 1308.57 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -93.70178-0.526 Picture PostScript Text
3' UTR -474.901733-0.274 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007940 - SH3-bd_5

Pfam Domains:
PF05276 - SH3 domain-binding protein 5 (SH3BP5)

SCOP Domains:
47170 - Aspartate receptor, ligand-binding domain
57997 - Tropomyosin

ModBase Predicted Comparative 3D Structure on O60239
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004860 protein kinase inhibitor activity
GO:0005515 protein binding
GO:0017124 SH3 domain binding

Biological Process:
GO:0006469 negative regulation of protein kinase activity
GO:0007165 signal transduction
GO:0035556 intracellular signal transduction
GO:0061099 negative regulation of protein tyrosine kinase activity

Cellular Component:
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0016604 nuclear body


-  Descriptions from all associated GenBank mRNAs
  BC023195 - Homo sapiens SH3-domain binding protein 5 (BTK-associated), mRNA (cDNA clone IMAGE:3882437).
AL117422 - Homo sapiens mRNA; cDNA DKFZp586J0724 (from clone DKFZp586J0724).
AB005047 - Homo sapiens mRNA for SH3 binding protein, complete cds.
BC010123 - Homo sapiens SH3-domain binding protein 5 (BTK-associated), mRNA (cDNA clone MGC:19574 IMAGE:3841593), complete cds.
AK090524 - Homo sapiens cDNA FLJ33205 fis, clone ADRGL2007651, highly similar to SH3 domain-binding protein 5.
BC006169 - Homo sapiens SH3-domain binding protein 5 (BTK-associated), mRNA (cDNA clone IMAGE:4025362).
AK313167 - Homo sapiens cDNA, FLJ93663, Homo sapiens SH3-domain binding protein 5 (BTK-associated)(SH3BP5), mRNA.
KJ904626 - Synthetic construct Homo sapiens clone ccsbBroadEn_14020 SH3BP5 gene, encodes complete protein.
KJ905379 - Synthetic construct Homo sapiens clone ccsbBroadEn_14941 SH3BP5 gene, encodes complete protein.
DQ892875 - Synthetic construct clone IMAGE:100005505; FLH190536.01X; RZPDo839B0576D SH3-domain binding protein 5 (BTK-associated) (SH3BP5) gene, encodes complete protein.
EU176725 - Synthetic construct Homo sapiens clone IMAGE:100011519; FLH190535.01L; RZPDo839H07255D SH3-domain binding protein 5 (BTK-associated) (SH3BP5) gene, encodes complete protein.
AB590534 - Synthetic construct DNA, clone: pFN21AE1920, Homo sapiens SH3BP5 gene for SH3-domain binding protein 5, without stop codon, in Flexi system.
BX641159 - Homo sapiens mRNA; cDNA DKFZp686F05233 (from clone DKFZp686F05233).
JD021391 - Sequence 2415 from Patent EP1572962.
JD028614 - Sequence 9638 from Patent EP1572962.
JD026169 - Sequence 7193 from Patent EP1572962.
JD029083 - Sequence 10107 from Patent EP1572962.
JD556866 - Sequence 537890 from Patent EP1572962.
JD046105 - Sequence 27129 from Patent EP1572962.
JD327908 - Sequence 308932 from Patent EP1572962.
JD532711 - Sequence 513735 from Patent EP1572962.
JD318736 - Sequence 299760 from Patent EP1572962.
JD314910 - Sequence 295934 from Patent EP1572962.
JD202645 - Sequence 183669 from Patent EP1572962.
JD249190 - Sequence 230214 from Patent EP1572962.
JD178298 - Sequence 159322 from Patent EP1572962.
JD471408 - Sequence 452432 from Patent EP1572962.
JD340087 - Sequence 321111 from Patent EP1572962.
JD138747 - Sequence 119771 from Patent EP1572962.
JD056769 - Sequence 37793 from Patent EP1572962.
JD203518 - Sequence 184542 from Patent EP1572962.
JD215227 - Sequence 196251 from Patent EP1572962.
JD408072 - Sequence 389096 from Patent EP1572962.
JD125528 - Sequence 106552 from Patent EP1572962.
JD192039 - Sequence 173063 from Patent EP1572962.
JD270939 - Sequence 251963 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: 3BP5_HUMAN, B3KQW6, ENST00000383791.1, ENST00000383791.2, ENST00000383791.3, ENST00000383791.4, ENST00000383791.5, ENST00000383791.6, ENST00000383791.7, NM_004844, O60239, Q5JWV9, SAB, uc318rgi.1, uc318rgi.2
UCSC ID: ENST00000383791.8_7
RefSeq Accession: NM_004844.5
Protein: O60239 (aka 3BP5_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.