Human Gene SIRT4 (ENST00000202967.4_4) from GENCODE V47lift37
  Description: sirtuin 4, transcript variant 1 (from RefSeq NM_012240.3)
Gencode Transcript: ENST00000202967.4_4
Gencode Gene: ENSG00000089163.4_8
Transcript (Including UTRs)
   Position: hg19 chr12:120,740,124-120,751,052 Size: 10,929 Total Exon Count: 4 Strand: +
Coding Region
   Position: hg19 chr12:120,741,365-120,750,839 Size: 9,475 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:120,740,124-120,751,052)mRNA (may differ from genome)Protein (314 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: SIR4_HUMAN
DESCRIPTION: RecName: Full=NAD-dependent protein deacetylase sirtuin-4; EC=3.5.1.-; AltName: Full=NAD-dependent ADP-ribosyltransferase sirtuin-4; EC=2.4.2.-; AltName: Full=Regulatory protein SIR2 homolog 4; AltName: Full=SIR2-like protein 4; Flags: Precursor;
FUNCTION: NAD-dependent protein ADP-ribosyl transferase. Catalyzes the transfer of ADP-ribosyl groups onto target proteins, including mitochondrial GLUD1. Inhibits GLUD1 enzyme activity. Down- regulates insulin secretion. Has no detectable protein deacetylase activity.
CATALYTIC ACTIVITY: NAD(+) + a protein = nicotinamide + an N-(ADP- D-ribosyl)-protein.
CATALYTIC ACTIVITY: NAD(+) + an acetylprotein = nicotinamide + O- acetyl-ADP-ribose + a protein.
COFACTOR: Binds 1 zinc ion per subunit (By similarity).
SUBUNIT: Interacts with GLUD1, IDE and SLC25A5.
INTERACTION: P05141:SLC25A5; NbExp=2; IntAct=EBI-2606540, EBI-355133;
SUBCELLULAR LOCATION: Mitochondrion matrix.
TISSUE SPECIFICITY: Detected in vascular smooth muscle and striated muscle. Detected in insulin-producing beta-cells in pancreas islets of Langerhans (at protein level). Widely expressed. Weakly expressed in leukocytes and fetal thymus.
MISCELLANEOUS: The reported ADP-ribosyltransferase activity of sirtuins may be an inefficient side reaction of the deacetylase activity and may not be physiologically relevant (By similarity).
SIMILARITY: Belongs to the sirtuin family. Class II subfamily.
SIMILARITY: Contains 1 deacetylase sirtuin-type domain.
SEQUENCE CAUTION: Sequence=AAB95634.1; Type=Erroneous gene model prediction;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 7.65 RPKM in Testis
Total median expression: 73.11 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -9.9059-0.168 Picture PostScript Text
3' UTR -41.20213-0.193 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003000 - Sirtuin
IPR026591 - Sirtuin_cat_small_dom
IPR026587 - Sirtuin_ClassII
IPR026590 - Ssirtuin_cat_dom

Pfam Domains:
PF02146 - Sir2 family

SCOP Domains:
52467 - DHS-like NAD/FAD-binding domain

ModBase Predicted Comparative 3D Structure on Q9Y6E7
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
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 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003950 NAD+ ADP-ribosyltransferase activity
GO:0005515 protein binding
GO:0016740 transferase activity
GO:0016787 hydrolase activity
GO:0046872 metal ion binding
GO:0047708 biotinidase activity
GO:0061690 lipoamidase activity
GO:0070403 NAD+ binding
GO:0034979 NAD-dependent protein deacetylase activity

Biological Process:
GO:0000820 regulation of glutamine family amino acid metabolic process
GO:0006342 chromatin silencing
GO:0006471 protein ADP-ribosylation
GO:0006541 glutamine metabolic process
GO:0006974 cellular response to DNA damage stimulus
GO:0007005 mitochondrion organization
GO:0010667 negative regulation of cardiac muscle cell apoptotic process
GO:0034983 peptidyl-lysine deacetylation
GO:0046322 negative regulation of fatty acid oxidation
GO:0046676 negative regulation of insulin secretion
GO:0046889 positive regulation of lipid biosynthetic process
GO:0071456 cellular response to hypoxia
GO:0072350 tricarboxylic acid metabolic process
GO:1903217 negative regulation of protein processing involved in protein targeting to mitochondrion
GO:1904182 regulation of pyruvate dehydrogenase activity

Cellular Component:
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0005759 mitochondrial matrix


-  Descriptions from all associated GenBank mRNAs
  BC053934 - Homo sapiens sirtuin (silent mating type information regulation 2 homolog) 4 (S. cerevisiae), mRNA (cDNA clone IMAGE:5272736), **** WARNING: chimeric clone ****.
BC034736 - Homo sapiens cDNA clone IMAGE:5186434, containing frame-shift errors.
BC109319 - Homo sapiens sirtuin (silent mating type information regulation 2 homolog) 4 (S. cerevisiae), mRNA (cDNA clone MGC:130046 IMAGE:40036789), complete cds.
BC109320 - Homo sapiens sirtuin (silent mating type information regulation 2 homolog) 4 (S. cerevisiae), mRNA (cDNA clone MGC:130047 IMAGE:40036792), complete cds.
AF083109 - Homo sapiens sirtuin type 4 (SIRT4) mRNA, complete cds.
KJ893366 - Synthetic construct Homo sapiens clone ccsbBroadEn_02760 SIRT4 gene, encodes complete protein.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9Y6E7 (Reactome details) participates in the following event(s):

R-HSA-5688276 SIRT4 transfers ADPRib to GLUD
R-HSA-2151201 Transcriptional activation of mitochondrial biogenesis
R-HSA-1592230 Mitochondrial biogenesis
R-HSA-1852241 Organelle biogenesis and maintenance

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000202967.1, ENST00000202967.2, ENST00000202967.3, NM_012240, O43346, Q32M33, Q9Y6E7, SIR2L4, SIR4_HUMAN, SIRT4 , uc317cit.1, uc317cit.2
UCSC ID: ENST00000202967.4_4
RefSeq Accession: NM_012240.3
Protein: Q9Y6E7 (aka SIR4_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.