Human Gene SLC25A11 (ENST00000225665.12_7) from GENCODE V47lift37
  Description: solute carrier family 25 member 11, transcript variant 1 (from RefSeq NM_003562.5)
Gencode Transcript: ENST00000225665.12_7
Gencode Gene: ENSG00000108528.14_9
Transcript (Including UTRs)
   Position: hg19 chr17:4,840,425-4,843,341 Size: 2,917 Total Exon Count: 8 Strand: -
Coding Region
   Position: hg19 chr17:4,841,036-4,843,205 Size: 2,170 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:4,840,425-4,843,341)mRNA (may differ from genome)Protein (314 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: Q6IBH0_HUMAN
DESCRIPTION: SubName: Full=SLC25A11 protein; SubName: Full=Solute carrier family 25 (Mitochondrial carrier; oxoglutarate carrier), member 11, isoform CRA_b; SubName: Full=cDNA FLJ76014, highly similar to Homo sapiens solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 (SLC25A11), mRNA;
SIMILARITY: Belongs to the mitochondrial carrier family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: SLC25A11
Diseases sorted by gene-association score: breast leiomyosarcoma (4), oculogyric crisis (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 91.21 RPKM in Heart - Left Ventricle
Total median expression: 1964.71 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -78.50136-0.577 Picture PostScript Text
3' UTR -223.60611-0.366 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR018108 - Mitochondrial_sb/sol_carrier
IPR023395 - Mt_carrier_dom

Pfam Domains:
PF00153 - Mitochondrial carrier protein

SCOP Domains:
103506 - Mitochondrial carrier

ModBase Predicted Comparative 3D Structure on Q6IBH0
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Cellular Component:
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  BC006508 - Homo sapiens solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11, mRNA (cDNA clone MGC:2449 IMAGE:2960933), complete cds.
BC006519 - Homo sapiens solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11, mRNA (cDNA clone MGC:4128 IMAGE:2960933), complete cds.
BC017170 - Homo sapiens solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11, mRNA (cDNA clone MGC:8575 IMAGE:2960933), complete cds.
BC016294 - Homo sapiens solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11, mRNA (cDNA clone MGC:9623 IMAGE:3911858), complete cds.
AF070548 - Homo sapiens clone 24408 2-oxoglutarate carrier protein mRNA, complete cds.
BC016473 - Homo sapiens solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11, mRNA (cDNA clone IMAGE:4186740), with apparent retained intron.
AK290376 - Homo sapiens cDNA FLJ76014 complete cds, highly similar to Homo sapiens solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 (SLC25A11), mRNA.
JD282805 - Sequence 263829 from Patent EP1572962.
JD090534 - Sequence 71558 from Patent EP1572962.
JD065297 - Sequence 46321 from Patent EP1572962.
JD186346 - Sequence 167370 from Patent EP1572962.
JD361887 - Sequence 342911 from Patent EP1572962.
JD434343 - Sequence 415367 from Patent EP1572962.
JD097281 - Sequence 78305 from Patent EP1572962.
JD236348 - Sequence 217372 from Patent EP1572962.
JD279800 - Sequence 260824 from Patent EP1572962.
JD054867 - Sequence 35891 from Patent EP1572962.
JD200307 - Sequence 181331 from Patent EP1572962.
JD425975 - Sequence 406999 from Patent EP1572962.
JD537964 - Sequence 518988 from Patent EP1572962.
JD461668 - Sequence 442692 from Patent EP1572962.
AK313010 - Homo sapiens cDNA, FLJ93475.
KJ892526 - Synthetic construct Homo sapiens clone ccsbBroadEn_01920 SLC25A11 gene, encodes complete protein.
CU677597 - Synthetic construct Homo sapiens gateway clone IMAGE:100018858 5' read SLC25A11 mRNA.
DQ891152 - Synthetic construct clone IMAGE:100003782; FLH169790.01X; RZPDo839G0296D solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 (SLC25A11) gene, encodes complete protein.
DQ894331 - Synthetic construct Homo sapiens clone IMAGE:100008791; FLH169786.01L; RZPDo839G0295D solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 (SLC25A11) gene, encodes complete protein.
CR456834 - Homo sapiens full open reading frame cDNA clone RZPDo834F0618D for gene SLC25A11, solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11; complete cds, incl. stopcodon.
JD223507 - Sequence 204531 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_malatexPathway - Shuttle for transfer of acetyl groups from mitochondria to the cytosol
h_malatePathway - Malate-aspartate shuttle

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000225665.1, ENST00000225665.10, ENST00000225665.11, ENST00000225665.2, ENST00000225665.3, ENST00000225665.4, ENST00000225665.5, ENST00000225665.6, ENST00000225665.7, ENST00000225665.8, ENST00000225665.9, hCG_32694 , NM_003562, Q6IBH0, Q6IBH0_HUMAN, SLC25A11 , uc317djr.1, uc317djr.2
UCSC ID: ENST00000225665.12_7
RefSeq Accession: NM_003562.5
Protein: Q6IBH0

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.