Human Gene SLC7A11 (ENST00000280612.9_7) from GENCODE V47lift37
  Description: solute carrier family 7 member 11 (from RefSeq NM_014331.4)
Gencode Transcript: ENST00000280612.9_7
Gencode Gene: ENSG00000151012.13_10
Transcript (Including UTRs)
   Position: hg19 chr4:139,085,251-139,163,503 Size: 78,253 Total Exon Count: 12 Strand: -
Coding Region
   Position: hg19 chr4:139,093,110-139,163,223 Size: 70,114 Coding Exon Count: 12 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:139,085,251-139,163,503)mRNA (may differ from genome)Protein (501 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: XCT_HUMAN
DESCRIPTION: RecName: Full=Cystine/glutamate transporter; AltName: Full=Amino acid transport system xc-; AltName: Full=Calcium channel blocker resistance protein CCBR1; AltName: Full=Solute carrier family 7 member 11; AltName: Full=xCT;
FUNCTION: Sodium-independent, high-affinity exchange of anionic amino acids with high specificity for anionic form of cystine and glutamate.
SUBUNIT: Disulfide-linked heterodimer with the amino acid transport protein SLC3A2/4F2hc (By similarity).
INTERACTION: P16070:CD44; NbExp=4; IntAct=EBI-3843348, EBI-490245;
SUBCELLULAR LOCATION: Membrane; Multi-pass membrane protein.
SIMILARITY: Belongs to the amino acid-polyamine-organocation (APC) superfamily. L-type amino acid transporter (LAT) (TC 2.A.3.8) family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: SLC7A11
Diseases sorted by gene-association score: dyscalculia (16), kaposi sarcoma (11), cystinuria (8), spondylolysis (6), anemia of prematurity (5)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 7.42 RPKM in Brain - Caudate (basal ganglia)
Total median expression: 81.38 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -68.60280-0.245 Picture PostScript Text
3' UTR -1875.007859-0.239 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002293 - AA/rel_permease1
IPR004760 - L_AA_transporter

Pfam Domains:
PF00324 - Amino acid permease
PF13520 - Amino acid permease

ModBase Predicted Comparative 3D Structure on Q9UPY5
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0015327 cystine:glutamate antiporter activity
GO:0022857 transmembrane transporter activity

Biological Process:
GO:0006865 amino acid transport
GO:0006979 response to oxidative stress
GO:0007420 brain development
GO:0009636 response to toxic substance
GO:0015813 L-glutamate transport
GO:0035094 response to nicotine
GO:0050900 leukocyte migration
GO:0055085 transmembrane transport
GO:0070306 lens fiber cell differentiation
GO:0070527 platelet aggregation

Cellular Component:
GO:0005791 rough endoplasmic reticulum
GO:0005856 cytoskeleton
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0009986 cell surface
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0043231 intracellular membrane-bounded organelle


-  Descriptions from all associated GenBank mRNAs
  AB040875 - Homo sapiens hxCT mRNA for cystine/glutamate exchanger, complete cds.
LP747434 - Sequence 21 from Patent WO2018009939.
BC041925 - Homo sapiens solute carrier family 7, (cationic amino acid transporter, y+ system) member 11, mRNA (cDNA clone IMAGE:5300264).
JD481599 - Sequence 462623 from Patent EP1572962.
JD370292 - Sequence 351316 from Patent EP1572962.
AJ277882 - Homo sapiens mRNA for cystine/glutamate transporter (XCT gene).
JD219896 - Sequence 200920 from Patent EP1572962.
JD517811 - Sequence 498835 from Patent EP1572962.
JD240839 - Sequence 221863 from Patent EP1572962.
JD514380 - Sequence 495404 from Patent EP1572962.
JD238664 - Sequence 219688 from Patent EP1572962.
JD451320 - Sequence 432344 from Patent EP1572962.
JD422000 - Sequence 403024 from Patent EP1572962.
JD446551 - Sequence 427575 from Patent EP1572962.
JD077584 - Sequence 58608 from Patent EP1572962.
JD199613 - Sequence 180637 from Patent EP1572962.
JD472573 - Sequence 453597 from Patent EP1572962.
JD565679 - Sequence 546703 from Patent EP1572962.
JD432589 - Sequence 413613 from Patent EP1572962.
JD112449 - Sequence 93473 from Patent EP1572962.
JD112448 - Sequence 93472 from Patent EP1572962.
JD089547 - Sequence 70571 from Patent EP1572962.
JD216171 - Sequence 197195 from Patent EP1572962.
JD302649 - Sequence 283673 from Patent EP1572962.
JD305905 - Sequence 286929 from Patent EP1572962.
AF252872 - Homo sapiens cystine/glutamate transporter xCT mRNA, complete cds.
JD061390 - Sequence 42414 from Patent EP1572962.
JD502583 - Sequence 483607 from Patent EP1572962.
BC012087 - Homo sapiens solute carrier family 7, (cationic amino acid transporter, y+ system) member 11, mRNA (cDNA clone MGC:20026 IMAGE:4562994), complete cds.
AK290359 - Homo sapiens cDNA FLJ78174 complete cds, highly similar to Homo sapiens mRNA for cystine/glutamate transporter (XCT gene).
JD301044 - Sequence 282068 from Patent EP1572962.
JD302053 - Sequence 283077 from Patent EP1572962.
JD244964 - Sequence 225988 from Patent EP1572962.
JD308379 - Sequence 289403 from Patent EP1572962.
AF200708 - Homo sapiens calcium channel blocker resistance protein CCBR1 mRNA, complete cds.
AB026891 - Homo sapiens mRNA for cystine/glutamate transporter, complete cds.
JD332604 - Sequence 313628 from Patent EP1572962.
AK314855 - Homo sapiens cDNA, FLJ95753, Homo sapiens solute carrier family 7, (cationic amino acidtransporter, y+ system) member 11 (SLC7A11), mRNA.
JF432710 - Synthetic construct Homo sapiens clone IMAGE:100073949 solute carrier family 7, (cationic amino acid transporter, y+ system) member 11 (SLC7A11) gene, encodes complete protein.
KJ893432 - Synthetic construct Homo sapiens clone ccsbBroadEn_02826 SLC7A11 gene, encodes complete protein.
AB385133 - Synthetic construct DNA, clone: pF1KB5613, Homo sapiens SLC7A11 gene for solute carrier family 7, member 11, complete cds, without stop codon, in Flexi system.
MB486574 - JP 2019531699-A/21: METHODS FOR DIAGNOSING AND TREATING CANCER.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9UPY5 (Reactome details) participates in the following event(s):

R-HSA-375131 Basigin binds CD98 complex
R-HSA-378513 SLC7A11-mediated exchange of extracellular cysteine and cytosolic glutamate
R-HSA-210991 Basigin interactions
R-HSA-352230 Amino acid transport across the plasma membrane
R-HSA-202733 Cell surface interactions at the vascular wall
R-HSA-425374 Amino acid and oligopeptide SLC transporters
R-HSA-425393 Metabolism of nitrogenous molecules
R-HSA-109582 Hemostasis
R-HSA-425407 SLC-mediated transmembrane transport
R-HSA-382551 Transport of small molecules

-  Other Names for This Gene
  Alternate Gene Symbols: A8K2U4, ENST00000280612.1, ENST00000280612.2, ENST00000280612.3, ENST00000280612.4, ENST00000280612.5, ENST00000280612.6, ENST00000280612.7, ENST00000280612.8, NM_014331, Q9UPY5, SLC7A11 , uc317jug.1, uc317jug.2, XCT_HUMAN
UCSC ID: ENST00000280612.9_7
RefSeq Accession: NM_014331.4
Protein: Q9UPY5 (aka XCT_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.