Human Gene SMAD7 (ENST00000262158.8_12) from GENCODE V47lift37
  Description: SMAD family member 7, transcript variant 1 (from RefSeq NM_005904.4)
Gencode Transcript: ENST00000262158.8_12
Gencode Gene: ENSG00000101665.10_15
Transcript (Including UTRs)
   Position: hg19 chr18:46,446,223-46,477,335 Size: 31,113 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg19 chr18:46,447,742-46,476,794 Size: 29,053 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr18:46,446,223-46,477,335)mRNA (may differ from genome)Protein (426 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: SMAD7_HUMAN
DESCRIPTION: RecName: Full=Mothers against decapentaplegic homolog 7; Short=MAD homolog 7; Short=Mothers against DPP homolog 7; AltName: Full=Mothers against decapentaplegic homolog 8; Short=MAD homolog 8; Short=Mothers against DPP homolog 8; AltName: Full=SMAD family member 7; Short=SMAD 7; Short=Smad7; Short=hSMAD7;
FUNCTION: Antagonist of signaling by TGF-beta (transforming growth factor) type 1 receptor superfamily members; has been shown to inhibit TGF-beta (Transforming growth factor) and activin signaling by associating with their receptors thus preventing SMAD2 access. Functions as an adapter to recruit SMURF2 to the TGF-beta receptor complex. Also acts by recruiting the PPP1R15A- PP1 complex to TGFBR1, which promotes its dephosphorylation. Positively regulates PDPK1 kinase activity by stimulating its dissociation from the 14-3-3 protein YWHAQ which acts as a negative regulator (By similarity).
SUBUNIT: Interacts with WWP1 (By similarity). Interacts with COPS5. Interacts with NEDD4L. Interacts with STAMBP. Interacts with RNF111, AXIN1 and AXIN2. Interacts with PPP1R15A. Interacts (via MH2 domain) with EP300. Interacts with ACVR1B, SMURF1, SMURF2 and TGFBR1; SMAD7 recruits SMURF1 and SMURF2 to the TGF-beta receptor and regulates its degradation. Interacts with PDPK1 (via PH domain).
INTERACTION: Q92905:COPS5; NbExp=10; IntAct=EBI-3861591, EBI-594661; O00308:WWP2; NbExp=5; IntAct=EBI-3861591, EBI-743923;
SUBCELLULAR LOCATION: Nucleus. Cytoplasm. Note=Interaction with NEDD4L or RNF111 or induces translocation from the nucleus to the cytoplasm. TGF-beta stimulates its translocation from the nucleus to the cytoplasm. PDPK1 inhibits its translocation from the nucleus to the cytoplasm in response to TGF-beta.
TISSUE SPECIFICITY: Ubiquitous with higher expression in the lung and vascular endothelium.
INDUCTION: By TGFB1.
PTM: Phosphorylation on Ser-249 does not affect its stability, nuclear localization or inhibitory function in TGFB signaling; however it affects its ability to regulate transcription (By similarity). Phosphorylated by PDPK1.
PTM: Ubiquitinated by WWP1 (By similarity). Polyubiquitinated by RNF111, which is enhanced by AXIN1 and promotes proteasomal degradation. In response to TGF-beta, ubiquitinated by SMURF1; which promotes its degradation.
PTM: Acetylation prevents ubiquitination and degradation mediated by SMURF1.
DISEASE: Genetic variations in SMAD7 influence susceptibility to colorectal cancer type 3 (CRCS3) [MIM:612229]. Colorectal cancer consists of tumors or cancer of either the colon or rectum or both. Cancers of the large intestine are the second most common form of cancer found in males and females. Symptoms include rectal bleeding, occult blood in stools, bowel obstruction and weight loss. Treatment is based largely on the extent of cancer penetration into the intestinal wall. Surgical cures are possible if the malignancy is confined to the intestine. Risk can be reduced when following a diet which is low in fat and high in fiber.
SIMILARITY: Belongs to the dwarfin/SMAD family.
SIMILARITY: Contains 1 MH1 (MAD homology 1) domain.
SIMILARITY: Contains 1 MH2 (MAD homology 2) domain.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: SMAD7
Diseases sorted by gene-association score: colorectal cancer 3* (594), keloids (11), fibrodysplasia ossificans progressiva (8), nephrogenic systemic fibrosis (7), peyronie's disease (7), pustulosis palmaris et plantaris (7), renal fibrosis (6), familial colorectal cancer (5), ureteral disease (5), hypochondrogenesis (5), colitis (5), ulcerative colitis (4), colorectal cancer (4), pancreatic cancer (3)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D013749 Tetrachlorodibenzodioxin
  • D002251 Carbon Tetrachloride
  • D013629 Tamoxifen
  • D014212 Tretinoin
  • C517041 (4-amino-1,4-dihydro-3-(2-pyridyl)-5-thioxo-1,2,4-triazole)copper(II)
  • C111118 2',3,3',4',5-pentachloro-4-hydroxybiphenyl
  • C548651 2-(1'H-indolo-3'-carbonyl)thiazole-4-carboxylic acid methyl ester
  • C115284 2-cyano-3-hydroxy-N-(4-(trifluoromethyl)phenyl)-2-hepten-6-ynamide
  • C017906 3-dinitrobenzene
  • C009505 4,4'-diaminodiphenylmethane
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 45.04 RPKM in Artery - Tibial
Total median expression: 551.89 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -276.50541-0.511 Picture PostScript Text
3' UTR -467.101519-0.308 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR013790 - Dwarfin
IPR003619 - MAD_homology1_Dwarfin-type
IPR013019 - MAD_homology_MH1
IPR017855 - SMAD_dom-like
IPR001132 - SMAD_dom_Dwarfin-type
IPR008984 - SMAD_FHA_domain

Pfam Domains:
PF03165 - MH1 domain
PF03166 - MH2 domain

SCOP Domains:
49879 - SMAD/FHA domain
56366 - SMAD MH1 domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2DJY - NMR MuPIT 2KXQ - NMR MuPIT


ModBase Predicted Comparative 3D Structure on O15105
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677 DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0005515 protein binding
GO:0005518 collagen binding
GO:0008013 beta-catenin binding
GO:0030617 transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity
GO:0031625 ubiquitin protein ligase binding
GO:0034713 type I transforming growth factor beta receptor binding
GO:0044212 transcription regulatory region DNA binding
GO:0046872 metal ion binding
GO:0048185 activin binding
GO:0070411 I-SMAD binding

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0001657 ureteric bud development
GO:0002725 negative regulation of T cell cytokine production
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0007179 transforming growth factor beta receptor signaling pathway
GO:0010717 regulation of epithelial to mesenchymal transition
GO:0010719 negative regulation of epithelial to mesenchymal transition
GO:0010801 negative regulation of peptidyl-threonine phosphorylation
GO:0010944 negative regulation of transcription by competitive promoter binding
GO:0016579 protein deubiquitination
GO:0017015 regulation of transforming growth factor beta receptor signaling pathway
GO:0022409 positive regulation of cell-cell adhesion
GO:0030336 negative regulation of cell migration
GO:0030509 BMP signaling pathway
GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030514 negative regulation of BMP signaling pathway
GO:0031397 negative regulation of protein ubiquitination
GO:0031398 positive regulation of protein ubiquitination
GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032925 regulation of activin receptor signaling pathway
GO:0033137 negative regulation of peptidyl-serine phosphorylation
GO:0034333 adherens junction assembly
GO:0034616 response to laminar fluid shear stress
GO:0034629 cellular protein complex localization
GO:0043433 negative regulation of sequence-specific DNA binding transcription factor activity
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0048844 artery morphogenesis
GO:0050821 protein stabilization
GO:0051444 negative regulation of ubiquitin-protein transferase activity
GO:0055010 ventricular cardiac muscle tissue morphogenesis
GO:0055117 regulation of cardiac muscle contraction
GO:0060373 regulation of ventricular cardiac muscle cell membrane depolarization
GO:0060389 pathway-restricted SMAD protein phosphorylation
GO:0060394 negative regulation of pathway-restricted SMAD protein phosphorylation
GO:0060412 ventricular septum morphogenesis
GO:0071560 cellular response to transforming growth factor beta stimulus
GO:1990830 cellular response to leukemia inhibitory factor
GO:2000317 negative regulation of T-helper 17 type immune response
GO:2000320 negative regulation of T-helper 17 cell differentiation

Cellular Component:
GO:0001650 fibrillar center
GO:0005622 intracellular
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005667 transcription factor complex
GO:0005737 cytoplasm
GO:0005813 centrosome
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0032991 macromolecular complex
GO:0005913 cell-cell adherens junction
GO:0016342 catenin complex


-  Descriptions from all associated GenBank mRNAs
  AF010193 - Homo sapiens MAD-related gene SMAD7 (SMAD7) mRNA, complete cds.
AK131394 - Homo sapiens cDNA FLJ16482 fis, clone BRTHA2017972, highly similar to Mothers against decapentaplegic homolog 7 (SMAD 7).
JD346816 - Sequence 327840 from Patent EP1572962.
JD088563 - Sequence 69587 from Patent EP1572962.
JD429989 - Sequence 411013 from Patent EP1572962.
JD410576 - Sequence 391600 from Patent EP1572962.
JD239614 - Sequence 220638 from Patent EP1572962.
JD414240 - Sequence 395264 from Patent EP1572962.
JD422817 - Sequence 403841 from Patent EP1572962.
JD506762 - Sequence 487786 from Patent EP1572962.
JD429352 - Sequence 410376 from Patent EP1572962.
JD061522 - Sequence 42546 from Patent EP1572962.
JD132676 - Sequence 113700 from Patent EP1572962.
JD105198 - Sequence 86222 from Patent EP1572962.
JD390412 - Sequence 371436 from Patent EP1572962.
JD271047 - Sequence 252071 from Patent EP1572962.
JD122332 - Sequence 103356 from Patent EP1572962.
JD054136 - Sequence 35160 from Patent EP1572962.
JD271407 - Sequence 252431 from Patent EP1572962.
JD375015 - Sequence 356039 from Patent EP1572962.
JD413097 - Sequence 394121 from Patent EP1572962.
JD271757 - Sequence 252781 from Patent EP1572962.
JD191597 - Sequence 172621 from Patent EP1572962.
JD038514 - Sequence 19538 from Patent EP1572962.
JD202910 - Sequence 183934 from Patent EP1572962.
JD253058 - Sequence 234082 from Patent EP1572962.
JD387655 - Sequence 368679 from Patent EP1572962.
JD067804 - Sequence 48828 from Patent EP1572962.
JD339726 - Sequence 320750 from Patent EP1572962.
JD372972 - Sequence 353996 from Patent EP1572962.
LF213672 - JP 2014500723-A/21175: Polycomb-Associated Non-Coding RNAs.
JD376191 - Sequence 357215 from Patent EP1572962.
JD394250 - Sequence 375274 from Patent EP1572962.
JD123607 - Sequence 104631 from Patent EP1572962.
JD528533 - Sequence 509557 from Patent EP1572962.
JD449972 - Sequence 430996 from Patent EP1572962.
JD057400 - Sequence 38424 from Patent EP1572962.
JD538192 - Sequence 519216 from Patent EP1572962.
JD282270 - Sequence 263294 from Patent EP1572962.
AK301535 - Homo sapiens cDNA FLJ57868 complete cds, highly similar to Mothers against decapentaplegic homolog 7 (SMAD 7).
JD114138 - Sequence 95162 from Patent EP1572962.
JD085336 - Sequence 66360 from Patent EP1572962.
JD111279 - Sequence 92303 from Patent EP1572962.
JD068002 - Sequence 49026 from Patent EP1572962.
JD410004 - Sequence 391028 from Patent EP1572962.
JD501486 - Sequence 482510 from Patent EP1572962.
JD295208 - Sequence 276232 from Patent EP1572962.
JD189117 - Sequence 170141 from Patent EP1572962.
JD532016 - Sequence 513040 from Patent EP1572962.
BC074818 - Homo sapiens SMAD family member 7, mRNA (cDNA clone MGC:103929 IMAGE:30915321), complete cds.
BC074819 - Homo sapiens SMAD family member 7, mRNA (cDNA clone MGC:104084 IMAGE:30915535), complete cds.
KJ891570 - Synthetic construct Homo sapiens clone ccsbBroadEn_00964 SMAD7 gene, encodes complete protein.
AF015261 - Homo sapiens Smad7 protein mRNA, complete cds.
AB385184 - Synthetic construct DNA, clone: pF1KB7024, Homo sapiens SMAD7 gene for SMAD family member 7, complete cds, without stop codon, in Flexi system.
AX754887 - Sequence 82 from Patent WO03037368.
AX754883 - Sequence 78 from Patent WO03037368.
AX754871 - Sequence 66 from Patent WO03037368.
AX754867 - Sequence 62 from Patent WO03037368.
AX754851 - Sequence 46 from Patent WO03037368.
AX754849 - Sequence 44 from Patent WO03037368.
JD150517 - Sequence 131541 from Patent EP1572962.
JD270618 - Sequence 251642 from Patent EP1572962.
JD200795 - Sequence 181819 from Patent EP1572962.
JD406128 - Sequence 387152 from Patent EP1572962.
JD129096 - Sequence 110120 from Patent EP1572962.
JD405791 - Sequence 386815 from Patent EP1572962.
JD461508 - Sequence 442532 from Patent EP1572962.
JD125443 - Sequence 106467 from Patent EP1572962.
JD210312 - Sequence 191336 from Patent EP1572962.
MA449249 - JP 2018138019-A/21175: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY66-11 - BMP Signalling Pathway

BioCarta from NCI Cancer Genome Anatomy Project
h_tgfbPathway - TGF beta signaling pathway

Reactome (by CSHL, EBI, and GO)

Protein O15105 (Reactome details) participates in the following event(s):

R-HSA-173483 BAMBI interferes with the interaction of type I receptor with type II receptor
R-HSA-173512 I-SMAD competes with SMAD2/3 for type I receptor (TGFBR1)
R-HSA-2128994 STRAP stabilizes interaction of activated TGF-beta receptor complex with SMAD7
R-HSA-178178 PP1 dephosphorylates TGFBR1
R-HSA-178208 SMAD7 binds to SMURF2
R-HSA-2167917 SMAD7 binds to SMURF1
R-HSA-2176416 NEDD4L ubiquitin ligase binds SMAD7
R-HSA-2186771 RNF111 binds SMAD7
R-HSA-178189 SMAD7 recruits GADD34:PP1 to phosphorylated TGFBR
R-HSA-2167876 SMAD7:SMURF2 complex translocates to the cytosol
R-HSA-178215 SMAD7:SMURF1 complex is exported to the cytosol
R-HSA-178218 SMAD7:SMURF complex binds to phosphorylated TGFBR1
R-HSA-2176417 SMAD7:NEDD4L complex translocates to the cytosol
R-HSA-201475 I-Smad competes with R-Smad1/5/8 for type I receptor
R-HSA-202626 I-Smad competes with Co-Smad for R-Smad1/5/8
R-HSA-2167924 SMAD7:SMURF1 complex binds XPO1 (CRM1)
R-HSA-2186785 RNF111 ubiquitinates SMAD7
R-HSA-2179293 UCHL5 binds SMAD7 in complex with ubiquitinated TGFBR1
R-HSA-2169050 SMURFs/NEDD4L ubiquitinate phosphorylated TGFBR1 and SMAD7
R-HSA-2179291 UCHL5, USP15 deubiquitinate TGFBR1
R-HSA-201821 I-Smad binds to type I receptor, preventing Smad1/5/8 from being activated
R-HSA-6781764 USP15 deubiquitinates SMAD1,SMAD2,SMAD3, SMAD7:SMURF,KEAP1
R-HSA-2173788 Downregulation of TGF-beta receptor signaling
R-HSA-2173796 SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription
R-HSA-201451 Signaling by BMP
R-HSA-2173789 TGF-beta receptor signaling activates SMADs
R-HSA-2173793 Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer
R-HSA-5689603 UCH proteinases
R-HSA-9006936 Signaling by TGF-beta family members
R-HSA-170834 Signaling by TGF-beta Receptor Complex
R-HSA-212436 Generic Transcription Pathway
R-HSA-5688426 Deubiquitination
R-HSA-5689880 Ub-specific processing proteases
R-HSA-162582 Signal Transduction
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-597592 Post-translational protein modification
R-HSA-74160 Gene expression (Transcription)
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: B7Z773, ENST00000262158.1, ENST00000262158.2, ENST00000262158.3, ENST00000262158.4, ENST00000262158.5, ENST00000262158.6, ENST00000262158.7, K7EQ10, MADH7, MADH8, NM_005904, O14740, O15105, Q6DK23, SMAD7_HUMAN, uc317gxk.1, uc317gxk.2
UCSC ID: ENST00000262158.8_12
RefSeq Accession: NM_005904.4
Protein: O15105 (aka SMAD7_HUMAN or SMA7_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.