Human Gene MTCL2 (ENST00000237536.9_13) from GENCODE V47lift37
  Description: suppressor of glucose, autophagy associated 1, transcript variant 1 (from RefSeq NM_080627.4)
Gencode Transcript: ENST00000237536.9_13
Gencode Gene: ENSG00000149639.15_17
Transcript (Including UTRs)
   Position: hg19 chr20:35,405,850-35,491,941 Size: 86,092 Total Exon Count: 15 Strand: -
Coding Region
   Position: hg19 chr20:35,414,888-35,491,747 Size: 76,860 Coding Exon Count: 15 

Page IndexSequence and LinksUniProtKB CommentsPrimersGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr20:35,405,850-35,491,941)mRNA (may differ from genome)Protein (1661 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: SOGA1_HUMAN
DESCRIPTION: RecName: Full=Protein SOGA1; AltName: Full=SOGA family member 1; AltName: Full=Suppressor of glucose by autophagy; AltName: Full=Suppressor of glucose, autophagy-associated protein 1; Contains: RecName: Full=N-terminal form; Contains: RecName: Full=C-terminal 80 kDa form; Short=80-kDa SOGA fragment;
FUNCTION: Regulates autophagy by playing a role in the reduction of glucose production in an adiponectin- and insulin-dependent manner (By similarity).
SUBUNIT: The C-terminal 25 kDa form occurs as a monomer (By similarity).
SUBCELLULAR LOCATION: C-terminal 80 kDa form: Secreted (By similarity). Note=Secreted in primary hepatocyte-conditioned media (By similarity).
INDUCTION: Up-regulated in the plasma by adiponectin in healthy fasting female.
PTM: Proteolytically cleaved in primary hepatocytes into a C- terminal 80 kDa form (By similarity). Proteolytically cleaved into a C-terminal SOGA 25 kDa form that is detected in plasma.
SIMILARITY: Belongs to the SOGA family.
SEQUENCE CAUTION: Sequence=BAA74912.2; Type=Erroneous initiation; Note=Translation N-terminally shortened;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 57.51 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 387.06 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -107.90194-0.556 Picture PostScript Text
3' UTR -3376.009038-0.374 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR021507 - DUF3166

Pfam Domains:
PF11365 - Protein SOGA
PF14818 - Domain of unknown function (DUF4482)

ModBase Predicted Comparative 3D Structure on O94964
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003674 molecular_function

Biological Process:
GO:0008286 insulin receptor signaling pathway
GO:0010506 regulation of autophagy
GO:0045721 negative regulation of gluconeogenesis

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  AK057056 - Homo sapiens cDNA FLJ32494 fis, clone SKNSH2000151.
AK126630 - Homo sapiens cDNA FLJ44670 fis, clone BRACE3005903.
JD192898 - Sequence 173922 from Patent EP1572962.
JD188949 - Sequence 169973 from Patent EP1572962.
BC148414 - Synthetic construct Homo sapiens clone IMAGE:100015397, MGC:183018 chromosome 20 open reading frame 117 (C20orf117) mRNA, encodes complete protein.
AB527119 - Synthetic construct DNA, clone: pF1KB7349, Homo sapiens C20orf117 gene for chromosome 20 open reading frame 117, without stop codon, in Flexi system.
JD064969 - Sequence 45993 from Patent EP1572962.
JD481956 - Sequence 462980 from Patent EP1572962.
JD162252 - Sequence 143276 from Patent EP1572962.
JD401056 - Sequence 382080 from Patent EP1572962.
JD037082 - Sequence 18106 from Patent EP1572962.
JD290895 - Sequence 271919 from Patent EP1572962.
JD390591 - Sequence 371615 from Patent EP1572962.
JD354118 - Sequence 335142 from Patent EP1572962.
JD393533 - Sequence 374557 from Patent EP1572962.
JD355287 - Sequence 336311 from Patent EP1572962.
JD227086 - Sequence 208110 from Patent EP1572962.
JD295979 - Sequence 277003 from Patent EP1572962.
JD091633 - Sequence 72657 from Patent EP1572962.
JD054232 - Sequence 35256 from Patent EP1572962.
JD551859 - Sequence 532883 from Patent EP1572962.
JD085970 - Sequence 66994 from Patent EP1572962.
JD065726 - Sequence 46750 from Patent EP1572962.
JD103916 - Sequence 84940 from Patent EP1572962.
JD252988 - Sequence 234012 from Patent EP1572962.
JD320747 - Sequence 301771 from Patent EP1572962.
JD302030 - Sequence 283054 from Patent EP1572962.
JD301299 - Sequence 282323 from Patent EP1572962.
JD297170 - Sequence 278194 from Patent EP1572962.
JD537792 - Sequence 518816 from Patent EP1572962.
JD438906 - Sequence 419930 from Patent EP1572962.
JD236586 - Sequence 217610 from Patent EP1572962.
JD058274 - Sequence 39298 from Patent EP1572962.
JD038014 - Sequence 19038 from Patent EP1572962.
JD510654 - Sequence 491678 from Patent EP1572962.
JD454610 - Sequence 435634 from Patent EP1572962.
JD341376 - Sequence 322400 from Patent EP1572962.
JD509634 - Sequence 490658 from Patent EP1572962.
JD357151 - Sequence 338175 from Patent EP1572962.
JD246259 - Sequence 227283 from Patent EP1572962.
JD293511 - Sequence 274535 from Patent EP1572962.
AK094762 - Homo sapiens cDNA FLJ37443 fis, clone BRAWH2009626.
JD552220 - Sequence 533244 from Patent EP1572962.
AL833153 - Homo sapiens mRNA; cDNA DKFZp313L1040 (from clone DKFZp313L1040).
AK131491 - Homo sapiens cDNA FLJ16682 fis, clone TRACH1000212.
JD501344 - Sequence 482368 from Patent EP1572962.
JD529321 - Sequence 510345 from Patent EP1572962.
JD494951 - Sequence 475975 from Patent EP1572962.
JD143193 - Sequence 124217 from Patent EP1572962.
JD266919 - Sequence 247943 from Patent EP1572962.
JD306926 - Sequence 287950 from Patent EP1572962.
JD525031 - Sequence 506055 from Patent EP1572962.
JD136585 - Sequence 117609 from Patent EP1572962.
JD195014 - Sequence 176038 from Patent EP1572962.
JD113830 - Sequence 94854 from Patent EP1572962.
JD437449 - Sequence 418473 from Patent EP1572962.
JD204749 - Sequence 185773 from Patent EP1572962.
JD106985 - Sequence 88009 from Patent EP1572962.
JD067805 - Sequence 48829 from Patent EP1572962.
JD269725 - Sequence 250749 from Patent EP1572962.
JD382492 - Sequence 363516 from Patent EP1572962.
JD204424 - Sequence 185448 from Patent EP1572962.
AK022023 - Homo sapiens cDNA FLJ11961 fis, clone HEMBB1001020, highly similar to Homo sapiens mRNA for KIAA0889 protein.
AB020696 - Homo sapiens mRNA for KIAA0889 protein, partial cds.
BC113405 - Homo sapiens chromosome 20 open reading frame 117, mRNA (cDNA clone IMAGE:8322457), complete cds.
BC113433 - Homo sapiens chromosome 20 open reading frame 117, mRNA (cDNA clone IMAGE:8322485), complete cds.

-  Other Names for This Gene
  Alternate Gene Symbols: A6NK10, C20orf117, ENST00000237536.1, ENST00000237536.2, ENST00000237536.3, ENST00000237536.4, ENST00000237536.5, ENST00000237536.6, ENST00000237536.7, ENST00000237536.8, KIAA0889, MTCL2 , MTCL2_HUMAN, NM_080627, O94964, Q14DB2, Q5JW51, Q6ZTG8, SOGA, SOGA1, uc317ecr.1, uc317ecr.2
UCSC ID: ENST00000237536.9_13
RefSeq Accession: NM_080627.4
Protein: O94964 (aka SOGA1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.